AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i250_tpal_bbur_300.orf -o250_tpal_bbur_300.ace -a/home/amcguire/genomes/ORF_tpal.txt -z/home/amcguire/genomes/synecho.fna -g0.40 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.4 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: RBB00541 16 3615 RBB00440 35 3615 RBB00792 20 3615 Input sequences: #1 RTP00409 181 AE000520 #2 RTP00881 18 AE000520 #3 RTP00885 152 AE000520 #4 RTP01136 83 AE000520 #5 RTP01045 27 AE000520 #6 RTP00239 45 AE000520 #7 RTP01008 135 AE000520 #8 RTP00560 30 AE000520 #9 RTP00559 134 AE000520 #10 RTP00558 177 AE000520 #11 RTP01173 118 AE000520 #12 RTP00700 135 AE000520 #13 RBB00598 129 3615 #14 RBB00539 271 3615 #15 RBB00437 22 3615 #16 RBB00433 30 3615 #17 RBB00432 92 3615 #18 RBB00430 43 3615 #19 RBB00429 50 3615 #20 RBB00174 118 3615 #21 RBB00173 153 3615 #22 RBB00171 29 3615 #23 RBB00159 51 3615 #24 RBB00003 148 3615 #25 RBB00742 50 3615 #26 RBB00741 300 3615 #27 RBB00883 74 3615 #28 RBB00339 77 3615 #29 RBB00328 18 3615 Motif number 1 ATTATATGTTATTATATTCTGAAAAAGTAAATTACT 13 30 0 AATATTTAAA 0.624359 -100 ATATAGATGCAAAAAAAAATGAATAATTTTTTATTT 13 67 1 AAAAAATATA 0.856951 -63 TCATATAGTCATAAAATAATTTAAGAGGTCCAAAAT 13 102 1 AAAATATAAA 0.78202 -28 ATTTTTATTAAAGATAAATTAAAATAATACATAT 14 9 0 AATAAATAAA 0.70251 -263 GTCCTTAAGTATAAAAATATTTTTGACTTGATCTTA 14 57 1 AAAAATTTTA 0.696751 -215 TTAAAAAAATAGAAAATTGTAAATATATTTTCTATT 14 188 1 AAAATTTATT 0.567102 -84 TTTCTATTGAAGCATAATTTTGAATTTCTTAGCTAT 14 216 1 AATAATTAAT 0.577005 -56 ACATTAAAATTTTACATAAAACTAATAA 14 254 0 AAAAATTCAA 0.75608 -18 TATTGATTTTAGCAAAAAATATATTAAATATTTTAA 17 39 0 AAAAAATATA 0.856952 -54 CAAATTAATCAAATTGTTATAAACAGATTTAAA 18 8 1 AAAATTTTAA 0.586012 -36 AAGAATTATAATGAAAAAGTATAATAAAGTGTATTA 19 14 1 AAAAAATAAA 0.904552 -37 TATTAATTATACTAAAATATATTATAATTAAATAAT 20 11 0 AAAAATTTAA 0.788868 -108 CACCAAGATTATTAAAATCTTTATTAACACTAAATA 21 29 0 AAAAATTATA 0.917614 -125 ATTTGTCTTTACAAAAATCTTAATTTTTTTAT 21 132 1 AAAAATTATT 0.77578 -22 AATAAAATTATATCAAACCTGCCAACT 22 13 0 AAAATTTCAA 0.539918 -17 AAATTGAAAAAATAAAAAATCTAATTTATTATTAAG 23 21 1 AAAAAATAAT 0.746352 -31 TTTTATTTTAATAATATATTGCAATATCAGTATTTC 24 66 0 AATATATAAA 0.472004 -83 ATATTATTAAAATAAAATGTGAAAAAATTTATTACA 24 85 1 AAAAATTAAA 0.946295 -64 CTTAACAAAGATCAAAATTTGCTAAACGGAGGCCAA 26 15 1 AAAAATTTAA 0.788996 -286 GGCCAAGTAGAAGAAATTTTTGAAGATATGCTTTGC 26 45 1 AAAATTTAAA 0.869628 -256 ACAATCAATTACAAAAAAGTAAATAATTCAAAAAAT 26 139 1 AAAAAATATA 0.856952 -162 GAAATTAAGTAGTAAAAACTTAATCACAATATTCAA 26 251 1 AAAAAATATA 0.856951 -50 TATAAATTCAAATATAATGTATATTATATAATATAT 27 16 0 AATAATTATA 0.73513 -59 ACAAAAGGACATCAAAATTTATAAATTCAAATATAA 27 35 0 AAAAATTAAT 0.845544 -40 ATCTAAAAATAAAAAAATATCAATAATGTATCAAGT 28 22 0 AAAAATTATA 0.917616 -56 TTCTTTTTTTAAGAAAATCTAAAAATAAAAAAATAT 28 38 0 AAAAATTAAT 0.845545 -40 * ***** * ** * Masking position 10 Map Score: 24.9772 Number of sites scoring better than the average of aligned sites = 537 Number in coding regions = 163 Number in noncoding regions = 374 Number of orfs with sites within 600 bp upstream = 7 Fraction of orfs with sites within 600 bp upstream = 0.00112432 Motif number 2 AAAGGTGTTACAGTACCAGCGCGTGTTCTTTCC 1 105 1 CAACAGCGCG 0.993674 -77 AAACACCGTAAAAAATGAACGCACCCAATCCTG 1 154 0 AAAGAACGCA 0.777083 -28 AGAAAAGCTTGAGCGCAAGTTCCTCGA 4 67 0 AATGAGCGCA 0.916435 -17 TATCCTGTGCCGCAAACAGCGCAACGCAGCGCG 7 25 1 CGACAGCGCA 0.971537 -111 CAACGCAGCGCGCAATGAGCGCATTCTGCGCAT 7 46 1 CGAGAGCGCA 0.971525 -90 AAAATCGAACCAGCACGAGCGTGCTGACCACCG 9 26 1 CAAGAGCGTG 0.96607 -109 CAGTGGATCTAAGAACGGGCGCGATTCTAATCC 9 83 0 AAAGGGCGCG 0.855904 -52 GCACCCACGACAAAATCAACGTGTGTACTCCAC 10 18 1 CAACAACGTG 0.837687 -160 GTGTACTCCACGAATCGAACGCGTGCCAGTGCG 10 40 1 CGTGAACGCG 0.881796 -138 GTATTGGGGGAAGATGCAGCGCGCAGTGTACCG 10 71 0 AATCAGCGCG 0.958719 -107 CATCTTCCCCCAATACCAGCGCGAGCTTGCCCT 10 88 1 CAACAGCGCG 0.993674 -90 GTATGGCGCACAGCTTGAGGGCAAGCTCGCGCT 10 105 0 CATGAGGGCA 0.88372 -73 CCAGGTGATACAGGTCCAGCGTAGTGTGTACGA 11 94 1 CATCAGCGTA 0.884649 -25 CCCCCACGCCCACTACCAGGGCGAAAAAGACCG 12 86 0 CAACAGGGCG 0.96576 -50 ** * ******* Masking position 11 Map Score: 14.7256 Number of sites scoring better than the average of aligned sites = 212 Number in coding regions = 70 Number in noncoding regions = 142 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555 Motif number 3 GCCAAGAATCTTTTTTTTTAGTACCCTCGGGG 3 75 0 TTTTTTTTAT 0.85043 -78 AAAAAATGAATAATTTTTTATTTCATATAGTC 13 80 1 TAATTTTTAT 0.897043 -50 CCTCTTAAATTATTTTATGACTATATGAAATA 13 98 0 TATTTTATAT 0.947235 -32 ATATGTATTATTTTAATTTATCTTTAA 14 6 1 TATTATTTAT 0.661742 -266 AAGTCAAAAATATTTTTATACTTAAGGACATA 14 54 0 TATTTTTAAT 0.85043 -218 TACAATTTTCTATTTTTTTAATAAACTAAGCA 14 177 0 TATTTTTTAT 0.958095 -95 AGGGTGTTTTTTATAAATTTATAACTTG 17 7 1 TTTTTTATAT 0.816969 -86 CACTTTATTATACTTTTTCATTATAATTCTTA 19 13 0 TACTTTTTAT 0.796953 -38 TATACTAAAATATATTATAATTAAATAAT 20 8 0 TATATTATAT 0.605604 -111 ACAGTCTCCTTTATTTATTACTTTTAACTAAA 20 86 0 TTATTTATAT 0.629806 -33 TTAGATTTTTTATTTTTTCAATTTTGAGAAAT 23 13 0 TATTTTTTAT 0.958095 -39 ATAAAAAATCTAATTTATTATTAAGTACGT 23 32 1 TAATTTATAT 0.872467 -20 TTTCACATTTTATTTTAATAATATATTGCAAT 24 77 0 TATTTTAAAT 0.816969 -72 TTAGGGGGAGTATTTTTTGAATTATTTACTTT 26 154 0 TATTTTTTAT 0.958095 -147 TGTGCCAATTTAATTTAAAAATGGTTTTAAAC 26 208 0 TAATTTAAAT 0.629801 -93 ACATTATTGATATTTTTTTATTTTTAGATTTT 28 29 1 TATTTTTTAT 0.958095 -49 ******** * * Masking position 6 Map Score: 15.9353 Number of sites scoring better than the average of aligned sites = 94 Number in coding regions = 27 Number in noncoding regions = 67 Number of orfs with sites within 600 bp upstream = 2 Fraction of orfs with sites within 600 bp upstream = 0.000321234 Motif number 4 GTAGCGTCGCAACGGACATGGGTTCGGGGATCTTTGTC 1 17 1 AAGGAGGCGG 0.963625 -165 TTCTTTCCTCAGCCGGTGAAGGCCCAGGATTGGGTGCG 1 130 1 AGCGGGGCGG 0.995364 -52 GAGAGGTGGCAGTGGATCTAAGAACGGGCGCGATTCTA 9 87 0 AGGGAAGCGG 0.963625 -48 GAGTGGGCGATGGACCGAGAGCGGGCTTT 11 2 1 AGGGGGGCAG 0.995802 -117 ATGGACCGAGAGCGGGCTTTGCACCGGGCAGGGCAGGT 11 20 1 AGGGGGCCGG 0.99014 -99 TTCTACTAAGGCGGAGCGGGCACCAGAGTTTCTTCC 12 9 1 AGCGGGGCAG 0.988226 -127 AAGACCGAAAAGAGGAACACGGAATTAGGCAGTTTCCT 12 55 0 AGGGAGGTAG 0.954974 -81 TCGCCCTGGTAGTGGGCGTGGGGGTTGGTGCGTGGCGT 12 95 1 AGGGGGGTGG 0.992848 -41 ** *** ** * ** Masking position 1 Map Score: 6.77928 Number of sites scoring better than the average of aligned sites = 367 Number in coding regions = 113 Number in noncoding regions = 254 Number of orfs with sites within 600 bp upstream = 8 Fraction of orfs with sites within 600 bp upstream = 0.00128493 Motif number 5 AAGAACACGCGCTGGTACTGTAACACCTTTCCATCTT 1 98 0 GCTGGTGCAC 0.958993 -84 TCTTTCCTCAGCCGGTGAAGGCCCAGGATTGGGTGCG 1 131 1 GCCGGAGCAG 0.912734 -51 GTGCCGAATGGCGTGCAATGCTGCGTGTATATCGCAG 7 95 1 GCGTGTGCGG 0.983077 -41 GGAAGATGCAGCGCGCAGTGTACCGCACTGGCACGCG 10 59 0 GCGCGTGCGA 0.905787 -119 GCAAGCTCGCGCTGGTATTGGGGGAAGATGCAGCGCG 10 81 0 GCTGGTGGAG 0.956823 -97 TGCAGCATGTGCGGGAAAAGTATGGCGCACAGCTTGA 10 120 0 GCGGGAGGGG 0.9778 -58 GAGTGGGCGATGGACCGAGAGCGGGCTTT 11 3 1 GTGGGTGCGG 0.990314 -116 TGGACCGAGAGCGGGCTTTGCACCGGGCAGGGCAGGT 11 21 1 GCGGGTGCGG 0.998212 -98 TACACACTACGCTGGACCTGTATCACCTGGCCAACAA 11 87 0 GCTGGTGCAC 0.958993 -32 GGTAGTGGGCGTGGGGGTTGGTGCGTGGCGTTACCGT 12 102 1 GTGGGTGCGG 0.990332 -34 ***** ** ** * Masking position 10 Map Score: 8.02955 Number of sites scoring better than the average of aligned sites = 244 Number in coding regions = 87 Number in noncoding regions = 157 Number of orfs with sites within 600 bp upstream = 5 Fraction of orfs with sites within 600 bp upstream = 0.000803084 Motif number 6 CTATATAGTAATTTACTTTTTCAGAATATAATAACATAT 13 24 1 ATTATTCATT 0.77896 -106 AAATTATTCATTTTTTTTTGCATCTATATTATTATATGT 13 57 0 TTTTTTAATT 0.68364 -73 TATTATTTTAATTTATCTTTAATAAAAATGCTTTAAGTT 14 16 1 ATTATTAAAT 0.531561 -256 TTTCTTAGCTATTTTTATTAGTTTTATGTAAAATTTTAA 14 240 1 ATTTTTTATT 0.596229 -32 TATCTAATATATTGATTTTAGCAAAAAATATATTAAATA 17 45 0 ATTATTCAAT 0.659688 -48 ATTATTTAATTATAATATATTTTAGTATAATT 20 4 1 ATTATAAATT 0.63568 -115 TCTAGATTGGATTAAATTTAGTTAAAAGTAATAAATAAA 20 70 1 ATTATTTAAT 0.700446 -49 TTTAGTGTTAATAAAGATTTTAATAATCTTGGTGGATCT 21 31 1 ATAATTAATT 0.489527 -123 TCTAGAATTCATTCTGATTATACTAATTTGAAAGCAATT 21 67 1 ATTTTTAATT 0.830584 -87 GGTTCCGGTATTTGTCTTTACAAAAATCTTAATTTTTTT 21 123 1 TTTTTTAATT 0.683733 -31 TTTTTTATTTTTTCAATTTTGAGAAATGT 23 1 0 TTTATTAATT 0.861749 -51 ATTTAAATTCCATTAAATTCAATTTTTAA 24 1 1 ATTATTAAAT 0.885276 -148 AAATTCAATTTTTAAGATTGAATCAATTTCTTGGTACAA 24 25 1 TTTATTAATT 0.861749 -124 TTTTTTCACATTTTATTTTAATAATATATTGCAATATCA 24 73 0 TTTATTTATT 0.652381 -76 ACAATAAAGCATTTACTTTGTAATAAATTTTTTCACATT 24 100 0 ATTATTAAAT 0.881348 -49 CATTGACATTCATGACATGTTCTGGTCTAC 25 2 1 ATTATTTATT 0.809798 -49 GGCCTTGCCGATTTAATTTACAATCAATTACAAAAAAGT 26 120 1 ATTATTAAAT 0.885856 -181 ATTATATCCTATTTAGTTTAAAACCATTTTTAAATTAAA 26 193 1 ATTATTAATT 0.93378 -108 AAATTTATAAATTCAAATATAATGTATATTATATAATAT 27 18 0 ATTATAAATT 0.63568 -57 CCTACCTCTATTTCTTTTTTTAAGAAAATCTAAAAATAA 28 46 0 TTTTTTAAAT 0.542779 -32 *** * ** * ** * Masking position 8 Map Score: 18.3604 Number of sites scoring better than the average of aligned sites = 147 Number in coding regions = 42 Number in noncoding regions = 105 Number of orfs with sites within 600 bp upstream = 1 Fraction of orfs with sites within 600 bp upstream = 0.000160617 Motif number 7 ACAGCGCAACGCAGCGCGCAATGAGCGCATTC 7 40 1 GAGCGCGCAT 0.981267 -96 GCAAGAGGCAGATGCGCAGAATGCGCTCATTG 7 58 0 GTGCGCAGAT 0.92192 -78 CGTGTATATCGCAGAGCACCGTTTTTAA 7 118 1 GAGAGCACCT 0.934653 -18 TTTTGTCGTGGGTGCGCGCCCT 10 1 0 GTGCGCGCCT 0.992967 -177 GGGGGAAGATGCAGCGCGCAGTGTACCGCACT 10 67 0 GAGCGCGCAT 0.981267 -111 TTGCCCTCAAGCTGTGCGCCATACTTTTCCCG 10 114 1 GTGTGCGCCT 0.96635 -64 GGCAATTCTTGTTGCGCAGATTGAGCTTGTTG 11 61 1 GTGCGCAGAT 0.92192 -58 CGTGGGGGTTGGTGCGTGGCGTTACCGTCGGT 12 111 1 GTGCGTGGCT 0.897712 -25 GTTCGATTCCGGTCAGCGCCTTCTAAGATCAA 14 84 0 GTCAGCGCCT 0.951997 -188 AGCCACTTGGGTACAGCGCCTTGTAACATTGC 14 148 1 GACAGCGCCT 0.931292 -124 * ******** * Masking position 12 Map Score: 11.0906 Number of sites scoring better than the average of aligned sites = 61 Number in coding regions = 18 Number in noncoding regions = 43 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 8 ACAGCGCAACGCAGCGCGCAATGAGCGCAT 7 40 1 GCAGCGCGCA 0.966755 -96 CGTGTATATCGCAGAGCACCGTTTTTAA 7 118 1 GCAGAGCACC 0.939219 -18 GCACGAGCGTGCTGACCACCGAACAACTTT 9 38 1 GCTGACCACC 0.855387 -97 TTTTGTCGTGGGTGCGCGCCCT 10 3 0 GGTGCGCGCC 0.649876 -175 GGGGGAAGATGCAGCGCGCAGTGTACCGCA 10 69 0 GCAGCGCGCA 0.966755 -109 TTGCCCTCAAGCTGTGCGCCATACTTTTCC 10 114 1 GCTGTGCGCC 0.967232 -64 AAGAAACTCTGGTGCCCGCTCCGCCTTAGT 12 15 0 GGTGCCCGCT 0.791321 -121 GTTCGATTCCGGTCAGCGCCTTCTAAGATC 14 86 0 GGTCAGCGCC 0.948205 -186 AGCCACTTGGGTACAGCGCCTTGTAACATT 14 148 1 GTACAGCGCC 0.790977 -124 ********** Masking position 7 Map Score: 6.51066 Number of sites scoring better than the average of aligned sites = 162 Number in coding regions = 42 Number in noncoding regions = 120 Number of orfs with sites within 600 bp upstream = 7 Fraction of orfs with sites within 600 bp upstream = 0.00112432 Motif number 9 TGCTATATAGTAATTTACTTTTTCAGAATATAA 13 22 1 TAATTACTTT 0.543015 -108 GCATCTATATTATTATATGTTATTATATTCTGA 13 44 0 TATTAATTTT 0.902405 -86 AGAAAATTGTAAATATATTTTCTATTGAAGCAT 14 198 1 AAATAATTTT 0.803127 -74 TTAAAATATTTAATATATTTTTTGCTAAAATCA 17 39 1 TAATAATTTT 0.95232 -54 TCAATCCCTTTAATACACTTTATTATACTTTTT 19 27 0 TAATAACTTT 0.917804 -24 TTAATTATACTAAAATATATTATAATTAAATAA 20 12 0 TAAAAATTTT 0.680051 -107 TATTTAGTGTTAATAAAGATTTTAATAATCTTG 21 29 1 TAATAAGTTT 0.806403 -125 CTTAATAATAAATTAGATTTTTTATTTTTTCAA 23 24 0 AATTAATTTT 0.653802 -28 ATTTACTTTGTAATAAATTTTTTCACATTTTAT 24 96 0 TAATAATTTT 0.952315 -53 AGTTATTATATTTTCTCCCCTTTCTT 26 285 0 TATTAATTTT 0.902405 -16 GTATATTATATAATATATATTAT 27 1 0 TAATAATTTT 0.95232 -74 ATATATTATATAATATACATTATATTTGAATTT 27 16 1 TAATAACTTT 0.917804 -59 ATTTTTTTATTTTTAGATTTTCTTAAAAAAAGA 28 40 1 TTTTAATTTT 0.495964 -38 ***** ** ** * Masking position 7 Map Score: 10.5237 Number of sites scoring better than the average of aligned sites = 23 Number in coding regions = 7 Number in noncoding regions = 16 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 10 CAAAGATCCCCGAACCCATGTCCGTTGCGA 1 23 0 CGAACCCATG 0.922446 -159 TTAGGGAAGACGTACCGATGTCCGCGACAA 1 50 0 CGTACCGATG 0.922056 -132 AAGGTGTTACAGTACCAGCGCGTGTTCTTT 1 106 1 AGTACCAGCG 0.866425 -76 CTTTTTTTTTAGTACCCTCGGGGACCGTTA 3 68 0 AGTACCCTCG 0.889311 -85 AGTGGATCTAAGAACGGGCGCGATTCTAAT 9 85 0 AGAACGGGCG 0.893236 -50 AGGGCGCGCACCCACGACAAAATCAA 10 7 1 CGCACCCACG 0.949579 -171 CGATTCGTGGAGTACACACGTTGATTTTGT 10 27 0 AGTACACACG 0.784331 -151 CTCCACGAATCGAACGCGTGCCAGTGCGGT 10 45 1 CGAACGCGTG 0.823432 -133 AGTACCGACGGTAACGCCAC 12 126 0 AGTACCGACG 0.963354 -10 TGACCGGAATCGAACCGGCGAATCAAAGTT 14 101 1 CGAACCGGCG 0.977658 -171 ********** Masking position 4 Map Score: 6.03171 Number of sites scoring better than the average of aligned sites = 151 Number in coding regions = 41 Number in noncoding regions = 110 Number of orfs with sites within 600 bp upstream = 3 Fraction of orfs with sites within 600 bp upstream = 0.00048185 Motif number 11 AAGCATGGCGAAGCAATTGCTG 3 2 0 AAGCAATTCT 0.974706 -151 ACTAATTTGAAAGCAATTCCTTTTGCTTTAT 21 88 1 AAGCAATTCT 0.974655 -66 TTTAAGATTGAATCAATTTCTTGGTACAAAG 24 35 1 AATCAATTCT 0.960796 -114 GAAAACAATAAAGCATTTACTTTGTAATAAA 24 112 0 AAGCATTTCT 0.95376 -37 TTTAATTTACAATCAATTACAAAAAAGTAAA 26 131 1 AATCAATTCA 0.858088 -170 GTATTTTTTGAATTATTTACTTTTTTGTAAT 26 146 0 AATTATTTCT 0.670164 -155 ******** ** Masking position 5 Map Score: 1.27196 Number of sites scoring better than the average of aligned sites = 64 Number in coding regions = 22 Number in noncoding regions = 42 Number of orfs with sites within 600 bp upstream = 3 Fraction of orfs with sites within 600 bp upstream = 0.00048185 Motif number 12 TCACTCCGTATCTGGCTGAGTGTCTCG 5 9 1 TATCTGCGAG 0.976884 -19 ATGCTGCGTGTATATCGCAGAGCACCGTTTTT 7 112 1 TATATGCGAG 0.989453 -24 GGGTATTTCGTATACTGCCGAGACGGTGCAGC 10 151 0 TATACGCGAG 0.976884 -27 AGTAAATTACTATATAGCAGAGGGTATAAT 13 9 0 TATATGCGAG 0.989453 -121 ATCAATATATTAGATAGCTGATAAATCACCCT 17 68 1 TAGATGCGAT 0.890085 -25 ***** ** *** Masking position 2 Map Score: 0.19681 Number of sites scoring better than the average of aligned sites = 7 Number in coding regions = 2 Number in noncoding regions = 5 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 TGTCCGCGACAAAGATCCCCGAACCCATGT 1 32 0 AAAGATCCCC 0.959971 -150 CCTCATATGTAACGGTCCCCGAGGGTACTA 3 59 1 AACGGTCCCC 0.919936 -94 TGCCGTTAAAAAAGGCACCCCTCATG 4 7 0 AAAGGCACCC 0.891078 -77 ACCCAGAGATAATGATCCCCA 8 2 0 AATGATCCCC 0.855416 -29 TTTCGAGCCATACTACCCCC 9 125 1 TACTACCCCC 0.845544 -10 GCAGTATACGAAATACCCCCACG 10 165 1 AAATACCCCC 0.972549 -13 AACGCCACGCACCAACCCCCACGCCCACTA 12 104 0 ACCAACCCCC 0.849903 -32 TAAATTTATAAAAAACACCCT 17 2 0 AAAAACACCC 0.849743 -91 ATAATTCAAAAAATACTCCCCCTAAACTCA 26 161 1 AAATACTCCC 0.821284 -140 ********** Masking position 8 Map Score: 1.52609 Number of sites scoring better than the average of aligned sites = 645 Number in coding regions = 193 Number in noncoding regions = 452 Number of orfs with sites within 600 bp upstream = 11 Fraction of orfs with sites within 600 bp upstream = 0.00176678 Motif number 14 ********** No masking Map Score: 4.87676e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: 4.87676e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0