AlignACE version 2.2 July 7, 1998 alignACE -a/home/amcguire/genomes/ORF_ctra.txt -z/home/amcguire/genomes/ctra.fna -ilexA_ctra_opreg_300.orf -g0.413 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.413 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 CT039.1 87 hypothetical protein #2 ruvB 41 Holliday Junction Helicase #3 tpiS 196 Triosephosphate Isomerase #4 CT330 208 hypothetical protein #5 pykF 96 Pyruvate Kinase #6 uvrA 22 Excinuclease ABC Subunit A #7 ruvC 107 Crossover Junction Endonuclease #8 CT503 286 hypothetical protein #9 gapA 43 Glyceraldehyde-3-P Dehydrogenase #10 rs11 21 S11 Ribosomal Protein #11 rs13 55 S13 Ribosomal Protein #12 secY 22 Translocase #13 rl18 21 L18 Ribosomal Protein #14 rl6 27 L6 Ribosomal Protein #15 rl16 32 L16 Ribosomal Protein #16 rl2 23 L2 Ribosomal Protein #17 rl3 300 L3 Ribosomal Protein #18 minD 300 chromosome partitioning ATPase-CHLTR plasmid protein homolog GP5D #19 trpS 198 Tryptophanyl tRNA Synthetase #20 uvrB 24 Exinuclease ABC Subunit B #21 uvrD 80 DNA Helicase #22 CT646 100 hypothetical protein #23 recA 260 hypothetical protein #24 ftsK 300 Cell Division Protein FtsK Motif number 1 CTTTAGTTAGAAAAAAAAGAGATAAAACTC 1 53 1 AAAAAAAAGA 0.909728 -35 GCAAATTCACAGAAAAAAGTAAGACAAGAA 3 41 1 AGAAAAAAGT 0.579858 -156 TAAATCATATAAAAATAAGCCTTCCTTGCA 3 112 1 AAAAATAAGC 0.786265 -85 TTAAAGTTCTAAAAAAAAGCAATGAACTTC 8 11 0 AAAAAAAAGC 0.966842 -276 CAAGAACCAGAGAAAAAAGATGTGCTCAGA 8 205 0 AGAAAAAAGA 0.869245 -82 AAAAATCGCAAAAACAAAGCCTGAAAAATC 17 60 0 AAAACAAAGC 0.735973 -241 TCTTAGCGTCAAGAAAAATCTCTTGTGTGG 17 101 1 AAGAAAAATC 0.78602 -200 TTCCACGACAAAGAAAACGCGGCTCCTTAA 17 177 0 AAGAAAACGC 0.871709 -124 CTACCATGGGAAGAAAAATCGTATAGTTAA 18 45 0 AAGAAAAATC 0.78602 -256 CCAATAATATAGAAAAGAGGTATCTGGAGA 18 151 1 AGAAAAGAGG 0.78342 -150 TGAATAAAGTAAGAAAGCTCTCCAGATACC 18 169 0 AAGAAAGCTC 0.407864 -132 TAAAGCAACTAAAAAGGAGCGAGGCTTCCT 18 251 1 AAAAAGGAGC 0.671017 -50 GATTTTTACGAAAAATAAGCCCCTAAAGCC 19 88 0 AAAAATAAGC 0.786265 -111 TTAAGAATTAAAGAAAAAGCAAGGAGCGAG 19 141 1 AAGAAAAAGC 0.959845 -58 AAAAAGATAAAGAAAAACGCTAA 22 88 1 AGAAAAACGC 0.845385 -13 ATGCAGATGCAGAAAAGAGGAGGGAGCTTT 23 30 0 AGAAAAGAGG 0.78342 -231 CTCTTTTTTCAAAAAAAAGAATGCAGATGC 23 50 0 AAAAAAAAGA 0.909728 -211 CTTTTTTTTGAAAAAAGAGGTCTCTTTCTT 23 61 1 AAAAAAGAGG 0.845761 -200 TCTTGAGTACAAGAAAGAGACCTCTTTTTT 23 71 0 AAGAAAGAGA 0.844957 -190 CATTCTAGATAAAAAAAAGAGTGTGGTTTT 23 116 1 AAAAAAAAGA 0.909728 -145 TTGTTATAACAGGAAAAATAAAAGAATCGA 24 161 0 AGGAAAAATA 0.455777 -140 ********** Masking position 4 Map Score: 19.1109 Number of sites scoring better than the average of aligned sites = 688 Number in coding regions = 688 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 2 GATAACAAACAGTCGAGAGAATTT 1 2 0 AGTCGGAGTT 0.813688 -86 ATTTCTTGCAAGGAAGGCTTATTTTTATATGAT 3 115 0 AGGAAGCTTT 0.671694 -82 TAGCGTCTTCAAAAGAGATTTTTTCCACGTTT 4 10 0 AAAAGGATTT 0.693896 -199 GAAAATGACAAGACGCGAGTGTTAAGAAAGGC 7 86 1 AGACGGAGTT 0.916909 -22 TTTATAGATGAGGAGAGCTATTTAACTCGGGGT 8 255 1 AGGAGGCTTT 0.962918 -32 TAATTTTTAGGAGAGAGTGTT 10 9 1 AGGAGGAGTT 0.99228 -13 GCAACTAAAAAGGAGCGAGGCTTCCTCCCCTAC 18 255 1 AGGAGGAGTT 0.99228 -46 AGAAAAAGCAAGGAGCGAGGTTTTTTCCCAAAC 19 152 1 AGGAGGAGTT 0.99228 -47 TTTTAAAATGAAGAGCGCTCATTTTAAAAAATA 22 59 0 AAGAGGCTTT 0.851463 -42 TGCAGAAAAGAGGAGGGAGCTTTTTATACGTAA 23 20 0 AGGAGGAGTT 0.99228 -241 TTTTTTATCTAGAATGGAGGTTTCTCTCTATTC 23 99 0 AGAATGAGTT 0.715003 -162 AGATAAAAAAAAGAGTGTGGTTTTTTTGAAATT 23 122 1 AAGAGGTGTT 0.817278 -139 ***** *** ** Masking position 1 Map Score: 11.7694 Number of sites scoring better than the average of aligned sites = 138 Number in coding regions = 137 Number in noncoding regions = 1 Number of orfs with sites within 600 bp upstream = 1 Fraction of orfs with sites within 600 bp upstream = 0.000160617 Motif number 3 ATGATTTATTTTCTATTGCTTTGATATAAATCT 3 87 0 TTTATGTTTG 0.891176 -110 CAAGAGAAGCTTCTAAAGACGTGGTTGGTTGAT 4 76 0 TTTAAGCGTG 0.95552 -133 CTTTAGAAGCTTCTCTTGCCTTGTATGAAGAGG 4 91 1 TTTCTGCTTG 0.871039 -118 TCTTGTCATTTTCTATATTTGTGCAAATTTTAC 7 66 0 TTTATTTGTG 0.645609 -42 CCATTGTAGCTTTTCCAGTCGTGCGTGCTAGAA 8 49 1 TTTCCGCGTG 0.884486 -238 CTAGAACTTCTTGTAAAGCTGTGGCGAGGACTC 8 76 1 TTTAAGTGTG 0.967919 -211 TGCAGATAGGTTATAAGGGTGTGTGAATTATT 15 11 1 TTTAAGTGTG 0.967919 -22 CTAGAACGATTTTTCAGGCTTTGTTTTTGCGAT 17 53 1 TTTCAGTTTG 0.918519 -248 CTGTGAAGCGTTGTCAAGTTGTGTGATAAGGTA 17 271 1 TTTCAGTGTG 0.972184 -30 TTTAATTCCTTTATATTGATTTGTCCATAAGCA 18 222 0 TTTATGTTTG 0.891176 -79 GTTTATCACGAGGTGAAGCCCTTGT 18 286 0 TTTCAGGGTG 0.944702 -15 GAAATAGCGCTTATATGGAGGTGTTAGCCTATC 24 239 0 TTTATGGGTG 0.925432 -62 ** *** * **** Masking position 4 Map Score: 12.0313 Number of sites scoring better than the average of aligned sites = 44 Number in coding regions = 44 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 4 TTTCTAACTAAAGTCTTTTCCTAGAAATATAG 1 34 0 AAGCTTTCCT 0.726201 -54 GTAGTGTTGAGAGTTTTATCTCTTTTTTTTCT 1 61 0 GAGTTTTCTC 0.95901 -27 GCATATCCAAGAGATTTATATCAAAGCAATAG 3 76 1 GAGTTTTATC 0.783907 -121 TCTTGCAAGGAAGGCTTATTTTTATATGATTT 3 113 0 AAGCTTTTTT 0.638542 -84 GTCTTCAAAAGAGATTTTTTCCACGTTT 4 7 0 GAGTTTTTCC 0.98124 -202 TGTATAGTTGAAGGCTTCTTTCATTTCGGATA 5 33 1 AAGCTTTTTC 0.890735 -64 GTGCAAGTTCGAGTCTTGTTCTGAGCACATCT 8 186 1 GAGCTTTTCT 0.917378 -101 AGCGTTATAAGTTTTCTTCCAAGGAAGCTC 17 9 1 AAGTTTTTCC 0.938319 -292 ATCCACACAAGAGATTTTTCTTGACGCTAAGA 17 101 0 GAGTTTTCTT 0.835805 -200 TTAACTATACGATTTTTCTTCCCATGGTAGTT 18 45 1 GATTTTTTCC 0.734376 -256 CCGTTTACAAAAGACTTATCCCTAAAAATAGA 18 94 1 AAGCTTTCCC 0.924433 -207 GGTATCTGGAGAGCTTTCTTACTTTATTCATC 18 169 1 GAGTTTTTAC 0.836807 -132 AAAAAGGAGCGAGGCTTCCTCCCCTACAAGGG 18 261 1 GAGCTTCTCC 0.866627 -40 AGCAAGGAGCGAGGTTTTTTCCCAAACAGGGT 19 158 1 GAGTTTTTCC 0.98124 -41 TTTGAAAAAAGAGGTCTCTTTCTTGTACTCAA 23 67 1 GAGTCTTTTC 0.783956 -194 ATCTAGAATGGAGGTTTCTCTCTATTCTTGAG 23 94 0 GAGTTTTCTC 0.959152 -167 *** *** **** Masking position 7 Map Score: 16.4682 Number of sites scoring better than the average of aligned sites = 278 Number in coding regions = 278 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 5 CTTTGATATAAATCTCTTGGATATGCTAAT 3 72 0 AATCTCTTGG 0.944294 -125 ACGTGGAAAAAATCTCTTTTGAAGACGCTA 4 13 1 AATCTCTTTT 0.769735 -196 TTTAACATACAATCCATTGTAGCTTTTCCA 8 36 1 AATCCATTGT 0.945993 -251 AGGGACTTAAAATCCCTTGGGCTTTGGCCC 8 156 1 AATCCCTTGG 0.97746 -131 CGTCAAGAAAAATCTCTTGTGTGGATGTCG 17 107 1 AATCTCTTGT 0.967674 -194 TCACGAGGTGAAGCCCTTGTAGGGGAGGAA 18 276 0 AAGCCCTTGT 0.953141 -25 TCTTAACAACTATCCATTGT 20 15 1 TATCCATTGT 0.758397 -10 GTATACTCCCTTGTTGCGCTGTCT 23 247 0 ACTCCCTTGT 0.953141 -14 ********** Masking position 7 Map Score: 5.42363 Number of sites scoring better than the average of aligned sites = 70 Number in coding regions = 70 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 6 GGGCTAAAACCAACTATTTAAGCAAATTCACAG 3 20 1 CACTATAAGC 0.779246 -177 AACAGCTTTCCGACCAACGGAGCGAATCGTAGC 4 181 1 CACCACGAGC 0.99517 -28 GTCTACCATTCCACCATCTGAGCAAAAACGACG 8 120 0 CACCACGAGC 0.99517 -167 GTTCTAGGTTTTACTAGTGGAGCTTCCTTGGAA 17 27 0 TACTATGAGC 0.881279 -274 TGAAACTCCCCAACTAGCAGAGCGTGCAGGCGC 24 20 0 CACTACGAGC 0.990075 -281 TCCGACGCTCTAACCAACTGAGCTACGTTCGCC 24 57 0 TACCACGAGC 0.98252 -244 TTCGAACCCGCGACCTTCGGAACCACAATCCGA 24 85 0 CACCTCGAAC 0.84729 -216 * **** * **** Masking position 3 Map Score: 4.47318 Number of sites scoring better than the average of aligned sites = 29 Number in coding regions = 29 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 7 GCACGTATTAAACAGCTTTCCGACCAACGGA 4 171 1 AACAGCTTCC 0.821033 -38 AATATTTAGCAACCGCAATCG 5 1 0 AACCGCATCG 0.937817 -96 CATCTCCTTTAACCTCATTCGTCCATGCTTA 18 197 1 AACCTCTTCG 0.92315 -104 TAGGGGAGGAAGCCTCGCTCCTTTTTAGTTG 18 256 0 AGCCTCCTCC 0.960537 -45 TTTGGGAAAAAACCTCGCTCCTTGCTTTTTC 19 153 0 AACCTCCTCC 0.991505 -46 AAAATCTTAACAACTATCCATTGT 20 9 1 AACAACATCC 0.888008 -16 TACGTATAAAAAGCTCCCTCCTCTTTTCTGC 23 21 1 AAGCTCCTCC 0.937939 -240 AATAGAGAGAAACCTCCATTCTAGATAAAAA 23 100 1 AACCTCATTC 0.865387 -161 ATTTCAAAAAAACCACACTCTTTTTTTTATC 23 123 0 AACCACCTCT 0.890403 -138 CGACCTTCGGAACCACAATCCGACGCTCTAA 24 77 0 AACCACATCC 0.978663 -224 ****** **** Masking position 9 Map Score: 5.02548 Number of sites scoring better than the average of aligned sites = 69 Number in coding regions = 69 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 8 TATGCTAATCTTCTTGTCTTACTTTTTTCTGTGA 3 47 0 TTCTTTTCTT 0.960169 -150 GTTTAATACGTGCTTCGACTTCTTGAATGCGAGA 4 150 0 TGCTTCTCTT 0.975583 -59 CAGTCGTGCGTGCTAGAACTTCTTGTAAAGCTGT 8 64 1 TGCTACTCTT 0.926612 -223 TGACCTAAGATGCTTATATTACTTTAAGGGAGGC 11 25 1 TGCTTTTCTT 0.968784 -31 GTTATTCTTCTCTTCCTTCTTTA 16 6 0 TTCTTTTCTT 0.960169 -18 AGCGTTATAAGTTTTCTTCCAAGGAAGC 17 5 1 TTATATTCTT 0.600001 -296 CTTTCTTACTTTATTCATCTCCTTTAACCTCATT 18 182 1 TTATTCTCTT 0.859377 -119 CCTTTTTAGTTGCTTTAATTCCTTTATATTGATT 18 234 0 TGCTTTTCTT 0.968784 -67 TTAGCGTTTTTCTTTATCTTTTTAAAATGAAGA 22 78 0 TTCTTCTTTT 0.752628 -23 ***** ** *** Masking position 10 Map Score: 4.47203 Number of sites scoring better than the average of aligned sites = 88 Number in coding regions = 88 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 9 GCTTTGATCTATCTTACAAAATACATGCACA 3 158 1 ATCTTAAAAA 0.396071 -39 TTCATTGCTTTTTTTTAGAACTTTAACATAC 8 15 1 TTTTTTGAAC 0.792776 -272 TGATGCTAATTTTTCGAAAACACTGACTA 9 9 1 ATTTTTGAAA 0.945375 -35 ATGTAACATCATCTTTAGAAAGATGATTGTT 19 26 0 ATCTTTGAAA 0.869213 -173 GAATCAGACTATTTTTAAAAAGCAGGCTTTA 19 64 1 ATTTTTAAAA 0.767414 -135 CATCTCTGGATTTTTACGAAAAATAAGCCCC 19 95 0 TTTTTAGAAA 0.887583 -104 TAATTAATGTTTTTCTTGAAAAAGATGTTTT 22 28 1 TTTTCTGAAA 0.793611 -73 AGATGTTTTTATTTTTTAAAATGAGCGCTCT 22 50 1 ATTTTTAAAA 0.809513 -51 TCTGCATTCTTTTTTTTGAAAAAAGAGGTCT 23 53 1 TTTTTTGAAA 0.95208 -208 AAGAGTGTGGTTTTTTTGAAATTCTAGCACT 23 132 1 TTTTTTGAAA 0.95208 -129 CGAAGTAGTCTTTTTAGGAAACTATAAAGAA 24 133 0 TTTTTAGAAA 0.869078 -168 ****** **** Masking position 9 Map Score: 6.686 Number of sites scoring better than the average of aligned sites = 178 Number in coding regions = 178 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 10 CGTCTTCAAAAGAGATTTTTTCCACGTTT 4 10 0 AGAGATTTTT 0.885442 -199 CGTTGGTCGGAAAGCTGTTTAATACGTGCT 4 170 0 AAAGCTGTTT 0.704104 -39 ATAGATGAGGAGAGCTATTTAACTCGGGGT 8 258 1 AGAGCTATTT 0.973258 -29 AGTAAAACCTAGAACGATTTTTCAGGCTTT 17 45 1 AGAACGATTT 0.521921 -256 CATCCACACAAGAGATTTTTCTTGACGCTA 17 104 0 AGAGATTTTT 0.885442 -197 CCATCCTGCAAGAGCGATTTCCACGACAAA 17 195 0 AGAGCGATTT 0.933043 -106 AGGTATCTGGAGAGCTTTCTTACTTTATTC 18 168 1 AGAGCTTTCT 0.891985 -133 AATTATAAACAGAGTTTTTTAA 22 3 0 AGAGTTTTTT 0.814923 -98 AGAGCTGTTTTACGTATAAA 23 1 1 AGAGCTGTTT 0.967929 -260 AAAAGAGGAGGGAGCTTTTTATACGTAAAA 23 18 0 GGAGCTTTTT 0.894276 -243 CCTCCATATAAGCGCTATTTCTGTTAAGAG 24 251 1 AGCGCTATTT 0.87287 -50 ********** Masking position 8 Map Score: 7.57862 Number of sites scoring better than the average of aligned sites = 176 Number in coding regions = 175 Number in noncoding regions = 1 Number of orfs with sites within 600 bp upstream = 1 Fraction of orfs with sites within 600 bp upstream = 0.000160617 Motif number 11 AAAAGAGATAAAACTCTCAACACTACAGCA 1 67 1 AAACTCTCAA 0.96014 -21 CGAAATCAGGAATCTCCCAAAAGGCTTTAC 7 13 0 AATCTCCCAA 0.936493 -95 TAAAGTAAGAAAGCTCTCCAGATACCTCTT 18 165 0 AAGCTCTCCA 0.975741 -136 CGCCATGGTGAAACTCCCCAACTAGCAGAG 24 31 0 AAACTCCCCA 0.965601 -270 ATCATTGCGGAAGCTCTCAATGATCCTAGC 24 212 0 AAGCTCTCAA 0.973863 -89 ********** Masking position 5 Map Score: 1.62499 Number of sites scoring better than the average of aligned sites = 39 Number in coding regions = 38 Number in noncoding regions = 1 Number of orfs with sites within 600 bp upstream = 1 Fraction of orfs with sites within 600 bp upstream = 0.000160617 Motif number 12 AAACCAACTATTTAAGCAAATTCACAGAAAA 3 26 1 TTTAGCAAAT 0.94503 -171 TGCACAGGTTATTCAGCAAATCTC 3 183 1 ATTAGCAAAT 0.900176 -14 TATACAAAATATTTAGCAACCGCAATCG 5 8 0 ATTAGCAACC 0.896487 -89 ATTTTCTATATTTGTGCAAATTTTACACAAT 7 61 0 TTTTGCAAAT 0.844544 -47 ACGCGGCTCCTTAAAGCAAACAAAGGCGGCG 17 160 0 TTAAGCAAAC 0.946576 -141 CTAATTACACTTTTAGCAAACGGCCATGCCC 17 226 0 TTTAGCAAAC 0.971244 -75 TATAAAGGAATTAAAGCAACTAAAAAGGAGC 18 240 1 TTAAGCAACT 0.815093 -61 TGTCTTTGAAATATTGCAAACTGACGCCACG 23 170 1 ATATGCAAAC 0.746002 -91 GAAGTAGTCTTTTTAGGAAACTATAAAGAAG 24 132 0 TTTAGGAAAC 0.830729 -169 *** ******* Masking position 8 Map Score: 3.207 Number of sites scoring better than the average of aligned sites = 87 Number in coding regions = 87 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 GAGACTCACATATACGCATTAATTGATCAGCCT 4 121 0 TTACCATAAT 0.979808 -88 TAGAAGATATTCTACTCACTAATACCGGTATCC 5 68 1 TTACCATAAT 0.979745 -29 TTGTGCAAATTTTACACAATAAAGGAAAGGGTT 7 48 0 TTACCATAAA 0.935435 -60 GGAGGGATACTGTACCCAATAATATAGAAAAGA 18 136 1 TTACCATAAT 0.979808 -165 GTCTCTTTCTTGTACTCAAGAATAGAGAGAAAC 23 80 1 TTACCAGAAT 0.956258 -181 * *** ** **** Masking position 8 Map Score: 1.15541 Number of sites scoring better than the average of aligned sites = 4 Number in coding regions = 4 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 TTTCCGACCAACGGAGCGAATCGTAGCCGGTC 4 187 1 ACGGAGGACG 0.688776 -22 CTGAGCAAAAACGACGAGGACCCTAAAGAGTCC 8 103 0 ACGACGGGCC 0.994885 -184 ACGAAGGGCCTCCCTTAAAGTAA 11 43 0 ACGAAGGCCC 0.951912 -13 CACGACAAAGAAAACGCGGCTCCTTAAAGCAAA 17 171 0 AAAACGGGCC 0.832449 -130 GTTTATCACGAGGTGAAGCCCTTGTAGGGG 18 281 0 ACGAGGGACC 0.981503 -20 AGCTGACTCACGAGGCGGGACCCTGTTTGGGA 19 177 0 ACGAGGGGCC 0.994885 -22 AGATGCAGAAAAGAGGAGGGAGCTTTTTATACG 23 23 0 AAGAGGGGGC 0.880436 -238 AGAAGGGCGAACGACGGGGTTCGAACCCGCGAC 24 104 0 ACGACGGGCG 0.985677 -197 ****** ** ** Masking position 1 Map Score: 2.27227 Number of sites scoring better than the average of aligned sites = 34 Number in coding regions = 34 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 TTCCAAACGTTTCATAGCGTCTTCAAAAGAG 4 26 0 TTCTAGCGTC 0.985164 -183 GGTTGGTTGATTCATAAGGTCTATGATCTCT 4 56 0 TTCTAAGGTC 0.947682 -153 TGGCGAGGACTCTTTAGGGTCCTCGTCGTTT 8 97 1 TCTTAGGGTC 0.852849 -190 GGATTTTAAGTCCCTAGTGTCTACCATTCCA 8 140 0 TCCTAGTGTC 0.918343 -147 GGTGTGGGATTTCTTAGCGTCAAGAAAAATC 17 90 1 TTCTAGCGTC 0.985164 -211 CCTCTTATATTTCGTGGCGTCAGTTTGCAAT 23 182 0 TTCTGGCGTC 0.95334 -79 CGGATTGTGGTTCCGAAGGTCGCGGGTTCGA 24 86 1 TTCGAAGGTC 0.847878 -215 *** ******* Masking position 10 Map Score: 1.69997 Number of sites scoring better than the average of aligned sites = 16 Number in coding regions = 16 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0