AlignACE version 2.2 July 7, 1998 alignACE -a/home/amcguire/genomes/ORF_ecoli.txt -z/home/amcguire/genomes/ecoli.fna -icrp_ecoli_opreg_100.orf -g0.5 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.5 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 araD 284 L-ribulose-5-phosphate 4-epimerase #2 araB 300 L-ribulokinase #3 lacA 65 thiogalactoside acetyltransferase #4 lacY 51 galactoside permease (M protein) #5 lacZ 122 beta-D-galactosidase #6 tsx 298 nucleoside channel; receptor of phage T6 and colicin K #7 nagD 47 N-acetylglucosamine metabolism #8 nagA 59 N-acetylglucosamine-6-phosphate deacetylase #9 nagB 300 glucosamine-6-phosphate deaminase #10 fur 288 negative regulator #11 galE 260 UDP-galactose-4-epimerase #12 ompA 300 outer membrane protein 3a (II*;G;d) #13 dadA 300 D-amino acid dehydrogenase subunit #14 cdd 129 cytidine/deoxycytidine deaminase #15 glpT_glpA 272 glpT: sn-glycerol-3-phosphate permease, glpA: sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit #16 ptsH 300 PTS system protein HPr #17 srlA 255 PTS system, glucitol/sorbitol-specific IIC component, one of two #18 gutM 104 glucitol operon activator #19 srlR 66 regulator for gut (srl), glucitol operon #20 gutQ 31 orf, hypothetical protein #21 ansB 175 periplasmic L-asparaginase II #22 nupG 153 transport of nucleosides, permease protein #23 tdcC 21 anaerobically inducible L-threonine, L-serine permease #24 tdcB 98 threonine dehydratase, catabolic #25 tdcA 188 transcriptional activator of tdc operon #26 crp 300 cyclic AMP receptor protein #27 ppiA 270 peptidyl-prolyl cis-trans isomerase A (rotamase A) #28 ompR 191 response regulator (sensor, EnvZ) affecting transcription of ompC and ompF: outer membrane protein synthesis #29 malT 300 positive regulator of mal regulon #30 glpG 44 protein of glp regulon #31 glpE_glpD 189 glpE: protein of glp regulon, glpD: sn-glycerol-3-phosphate dehydrogenase (aerobic) #32 aldB 74 aldehyde dehydrogenase B (lactaldehyde dehydrogenase) #33 yiaY 189 putative oxidoreductase #34 mtlA 300 PTS system, mannitol-specific enzyme IIABC components #35 mtlD 229 mannitol-1-phosphate dehydrogenase #36 ilvB 105 acetolactate synthase I,valine-sensitive, large subunit #37 tnaL 242 tryptophanase leader peptide #38 cyaA 300 adenylate cyclase #39 rhaD 300 rhamnulose-phosphate aldolase #40 rhaB_rhaS 287 rhaB: rhamnulokinase, rhaS: positive regulator for rhaBAD operon #41 glpK 22 glycerol kinase #42 glpF 300 facilitated diffusion of glycerol #43 cytR 155 regulator for deo operon, udp, cdd, tsx, nupC, and nupG #44 malF 153 part of maltose permease, periplasmic #45 malE_malK 364 malE: periplasmic maltose-binding protein; substrate recognition for transport and chemotaxis, malK: ATP-binding component of transport system for maltose #46 lamB 71 phage lambda receptor protein; maltose high-affinity receptor #47 malM 242 periplasmic protein of mal regulon #48 melR 282 regulator of melibiose operon #49 uxuA 300 mannonate hydrolase #50 uxuB 80 D-mannonate oxidoreductase #51 deoC 257 2-deoxyribose-5-phosphate aldolase #52 deoA 126 thymidine phosphorylase #53 deoB 51 phosphopentomutase #54 deoD 56 purine-nucleoside phosphorylase Motif number 1 GGCGTTACATACCGGATGCGGCTAC 1 6 0 ACCGGATGCG 0.86482 -279 GGTATGTAACGCCTGATGCGACGCTGACGC 1 23 1 GCCTGATGCG 0.995709 -262 CAGCGTGTAGGCCAGATAAGACGCGTCAGC 1 45 0 GCCAGATAAG 0.87799 -240 GATTTTGTAGGCCGGATAAGCAAAGCGCAT 1 76 1 GCCGGATAAG 0.992544 -209 GGCGTTGAATGCCGGATGCGCTTTGCTTAT 1 91 0 GCCGGATGCG 0.997554 -194 GGCATTCAACGCCTGATGCGACGCTGGCGC 1 108 1 GCCTGATGCG 0.995709 -177 CAGCGCGTAGGCCTGATAAGACGCGCCAGC 1 130 0 GCCTGATAAG 0.986967 -155 GATTTTGTAGGCCGGATAAGCAAAGCGCAT 1 161 1 GCCGGATAAG 0.992544 -124 GGCGTTGAATGCCGGATGCGCTTTGCTTAT 1 176 0 GCCGGATGCG 0.997554 -109 GGCATTCAACGCCTGATGCGACGCTGGCGC 1 193 1 GCCTGATGCG 0.995709 -92 CAGCGTGTAGGCCTGATAAGACGCGCCAGC 1 215 0 GCCTGATAAG 0.986967 -70 GATTTTGTAGGCCGGATAAGCAAAGCGCAT 1 246 1 GCCGGATAAG 0.992544 -39 ACTCCTTCGTGCCGGATGCGCTTTGCTTAT 1 261 0 GCCGGATGCG 0.997554 -24 GCAATCAATGTCGGATGCGGCGCGAGCGC 3 10 1 GTCGGATGCG 0.957189 -56 TGATATGTTGGTCGGATAAGGCGCTCGCGC 3 30 0 GTCGGATAAG 0.879473 -36 AGCCTGGGGTGCCTAATGAGTGAGCTAACT 5 30 0 GCCTAATGAG 0.791938 -93 TGCTGACCTTGCCGGAGGCGGCCTTAGCAC 11 19 1 GCCGGAGGCG 0.939152 -242 GGTAGTCACTGCCCGATACGGACTTTACAT 17 79 1 GCCCGATACG 0.910702 -177 ACTATAGAATGCCTGATGCGCTACGCTCAT 18 45 1 GCCTGATGCG 0.995709 -60 AGTCCTGTATGCCTGATGAGCGTAGCGCAT 18 60 0 GCCTGATGAG 0.992786 -45 GGGGTTAATTGCCTGATGCGCTACGCTTAT 35 42 1 GCCTGATGCG 0.995709 -188 CATCCTGTAGGCCTGATAAGCGTAGCGCAT 35 57 0 GCCTGATAAG 0.986967 -173 GTTCTTGTAGGCCGGATAAGGCGCTTACGC 35 111 1 GCCGGATAAG 0.992544 -119 GAGGGGCAGCGCCGGATGCGGCGTAAGCGC 35 131 0 GCCGGATGCG 0.997554 -99 CATTCTGACTGTCAGATGCGGCTTCGCTTC 37 28 1 GTCAGATGCG 0.547243 -215 GCCTGATAAGACGCGACAGC 39 1 1 GCCTGATAAG 0.986967 -300 GGCAATCAATGCCTGATGCGACGCTGTCGC 39 23 0 GCCTGATGCG 0.995709 -278 GGCATTGATTGCCGGATGCGGCACAAGTGC 39 40 1 GCCGGATGCG 0.997554 -261 CGACCTGTAGGCCGGATAAGGCACTTGTGC 39 60 0 GCCGGATAAG 0.992544 -241 ACAGTTGTAGGCCTGATAAGACGCGACAGC 39 93 1 GCCTGATAAG 0.986967 -208 GGCAATCAATGCCTGATGCGACGCTGTCGC 39 115 0 GCCTGATGCG 0.995709 -186 GGCATTGATTGCCGGATGCGCACAAGTCGC 39 132 1 GCCGGATGCG 0.997554 -169 CGACCTGTAGGCCTGATAAGCGACTTGTGC 39 151 0 GCCTGATAAG 0.986967 -150 ATAGTTGTAGGCCTGATAAGACGCGACAGC 39 184 1 GCCTGATAAG 0.986967 -117 GGCAATCAATGCCTGATGCGACGCTGTCGC 39 206 0 GCCTGATGCG 0.995709 -95 CGACCCGTAGGCCGGATAAGGCGCTCGCGC 39 244 0 GCCGGATAAG 0.992544 -57 GCTGTGAAATGCCGGATGCGGCGTGAACGC 44 12 1 GCCGGATGCG 0.997554 -142 GGTTTTGTAGGCCGGACAAGGCGTTCACGC 44 32 0 GCCGGACAAG 0.834358 -122 ACGTATGTAGGCCTGATAAGACGCGTCAGC 44 65 1 GCCTGATAAG 0.986967 -89 GACAACAACTGCCTGATGCGACGCTGACGC 44 87 0 GCCTGATGCG 0.995709 -67 GGCAGTTGTTGTCGGATAAGGCGTGAAAGC 44 104 1 GTCGGATAAG 0.879473 -50 CTCATTCCAGGACGGATAAGGCTTTCACGC 44 124 0 GACGGATAAG 0.689234 -30 CAAAACCTGGGCCGGATAAGGCGTTTACGC 47 14 1 GCCGGATAAG 0.992544 -229 GGCGTTGGTTGCCGAATGCGGCGTAAACGC 47 34 0 GCCGAATGCG 0.918575 -209 GGCAACCAACGCCTGATGCGACGCTTGCGC 47 51 1 GCCTGATGCG 0.995709 -192 GCCGTTGTAGGCCTGATAAGACGCGCAAGC 47 73 0 GCCTGATAAG 0.986967 -170 TCAAATGTAGGCCGGATAAGGCGTTTACGC 47 105 1 GCCGGATAAG 0.992544 -138 CTGTTTTTATGCCGGATGCGGCGTAAACGC 47 125 0 GCCGGATGCG 0.997554 -118 TTCACTTTGATCCTGATGCGTTTGCCACCA 51 65 1 TCCTGATGCG 0.784465 -193 GATGCTTTACGCCTGATGCGCTGCGCTTAT 52 15 1 GCCTGATGCG 0.995709 -112 CGTCTCGTAGGCCTGATAAGCGCAGCGCAT 52 30 0 GCCTGATAAG 0.986967 -97 CTACCCGTAGGCCGGATAAGGCGTAGACGC 52 63 1 GCCGGATAAG 0.992544 -64 GGCGGCTTTTGCCGGATGCGTCTACGCCTT 52 80 0 GCCGGATGCG 0.997554 -47 ********** Masking position 6 Map Score: 215.797 Number of sites scoring better than the average of aligned sites = 879 Number in coding regions = 244 Number in noncoding regions = 635 Number of orfs with sites within 600 bp upstream = 119 Fraction of orfs with sites within 600 bp upstream = 0.0191134 Motif number 2 AATCGCAGCGTGTAGGCCAGATAAGACGCG 1 50 0 TGTAGGCCAG 0.934164 -235 GCTGCGATTTTGTAGGCCGGATAAGCAAAG 1 71 1 TGTAGGCCGG 0.996289 -214 CATCAGGCGTTGAATGCCGGATGCGCTTTG 1 96 0 TGAATGCCGG 0.900587 -189 AATCGCAGCGCGTAGGCCTGATAAGACGCG 1 135 0 CGTAGGCCTG 0.978946 -150 GCTGCGATTTTGTAGGCCGGATAAGCAAAG 1 156 1 TGTAGGCCGG 0.996289 -129 CATCAGGCGTTGAATGCCGGATGCGCTTTG 1 181 0 TGAATGCCGG 0.900587 -104 AATCGCAGCGTGTAGGCCTGATAAGACGCG 1 220 0 TGTAGGCCTG 0.991903 -65 GCTGCGATTTTGTAGGCCGGATAAGCAAAG 1 241 1 TGTAGGCCGG 0.996289 -44 TGCGTCGAACCGTTGGCCGGAGAGGGTGCT 11 44 0 CGTTGGCCGG 0.932765 -217 GCGGAAGTCCTGTATGCCTGATGAGCGTAG 18 65 0 TGTATGCCTG 0.957189 -40 TGATGCATCCTGTAGGCCTGATAAGCGTAG 35 62 0 TGTAGGCCTG 0.991903 -168 TGCACGTTCTTGTAGGCCGGATAAGGCGCT 35 106 1 TGTAGGCCGG 0.996289 -124 CATCAGGCATTGATTGCCGGATGCGGCACA 39 35 1 TGATTGCCGG 0.552263 -266 GTTGCCGACCTGTAGGCCGGATAAGGCACT 39 65 0 TGTAGGCCGG 0.996289 -236 CGGCAACAGTTGTAGGCCTGATAAGACGCG 39 88 1 TGTAGGCCTG 0.991903 -213 CATCAGGCATTGATTGCCGGATGCGCACAA 39 127 1 TGATTGCCGG 0.552263 -174 ATTGCCGACCTGTAGGCCTGATAAGCGACT 39 156 0 TGTAGGCCTG 0.991903 -145 CGGCAATAGTTGTAGGCCTGATAAGACGCG 39 179 1 TGTAGGCCTG 0.991903 -122 ATGCACGACCCGTAGGCCGGATAAGGCGCT 39 249 0 CGTAGGCCGG 0.990281 -52 CCACGATGCTTGTAGGCATGCTGTAAACTT 42 229 0 TGTAGGCATG 0.789722 -72 GTTTCGGTTTTGTAGGCCGGACAAGGCGTT 44 37 0 TGTAGGCCGG 0.996289 -117 CCGAAACGTATGTAGGCCTGATAAGACGCG 44 60 1 TGTAGGCCTG 0.991903 -94 TGACAGCCGTTGTAGGCCTGATAAGACGCG 47 78 0 TGTAGGCCTG 0.991903 -165 GGCTGTCAAATGTAGGCCGGATAAGGCGTT 47 100 1 TGTAGGCCGG 0.996289 -143 ACAACCTGTTTTTATGCCGGATGCGGCGTA 47 130 0 TTTATGCCGG 0.600321 -113 AGATACGTCTCGTAGGCCTGATAAGCGCAG 52 35 0 CGTAGGCCTG 0.978946 -92 CGTATCTACCCGTAGGCCGGATAAGGCGTA 52 58 1 CGTAGGCCGG 0.990281 -69 ********** Masking position 6 Map Score: 95.3986 Number of sites scoring better than the average of aligned sites = 307 Number in coding regions = 64 Number in noncoding regions = 243 Number of orfs with sites within 600 bp upstream = 69 Fraction of orfs with sites within 600 bp upstream = 0.0110826 Motif number 3 TAACGCCTGATGCGACGCTGACGCGTCTTATCTGGC 1 29 1 TGCGCGCGCT 0.998831 -256 CAACGCCTGATGCGACGCTGGCGCGTCTTATCAGGC 1 114 1 TGCGCGCGCT 0.998831 -171 CAACGCCTGATGCGACGCTGGCGCGTCTTATCAGGC 1 199 1 TGCGCGCGCT 0.998831 -86 CAATGTCGGATGCGGCGCGAGCGCCTTATCCGACCA 3 16 1 TGCGCGCGCT 0.998831 -50 TGTGATGCGGCGTAGACTCATGTCTACGCCG 10 6 1 TGCGCGCTCT 0.972794 -283 TCCCTGACTCTGCGGCAATATGGCGTCTTTAGTATC 13 160 0 TGCGCAGGCT 0.932746 -141 CAGCGCCGGATGCGGCGTAAGCGCCTTATCCGGCCT 35 119 0 TGCGCGCGCT 0.998831 -111 CCGCCCGGTTTGCGCCGGCGGGGTTTTGGAATCGTG 36 25 0 TGCGCGGGTT 0.875706 -81 CAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGC 39 11 0 TGCGCGCGCT 0.998831 -290 GATTGCCGGATGCGGCACAAGTGCCTTATCCGGCCT 39 46 1 TGCGCATGCT 0.777321 -255 CAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGC 39 103 0 TGCGCGCGCT 0.998831 -198 AGGCCTGATAAGCGACTTGTGCGCATCCGGCAATCA 39 137 0 AGCGCTCGCT 0.884165 -164 CAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGC 39 194 0 TGCGCGCGCT 0.998831 -107 AAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCT 44 18 1 TGCGCGCGCT 0.998831 -136 AACTGCCTGATGCGACGCTGACGCGTCTTATCAGGC 44 75 0 TGCGCGCGCT 0.998831 -79 GATCACACAAAGCGACGGTGGGGCGTAGGGGCAAGG 45 255 1 AGCGCGGGCT 0.969879 -110 GGTTGCCGAATGCGGCGTAAACGCCTTATCCGGCCC 47 22 0 TGCGCGCGCT 0.998831 -221 CAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGC 47 57 1 TGCGCGCGCT 0.998831 -186 TTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCT 47 113 0 TGCGCGCGCT 0.998831 -130 ATTTGGGCGGAGCGTTGACTCCGCCTTTGTTATGTC 54 14 1 AGCGTGCGCT 0.872408 -43 **** ** *** * Masking position 16 Map Score: 80.1939 Number of sites scoring better than the average of aligned sites = 316 Number in coding regions = 56 Number in noncoding regions = 260 Number of orfs with sites within 600 bp upstream = 77 Fraction of orfs with sites within 600 bp upstream = 0.0123675 Motif number 4 TAACGCCTGATGCGACGCTGACGCGTCTTATCTG 1 29 1 TGCGACGCGC 0.997711 -256 CAACGCCTGATGCGACGCTGGCGCGTCTTATCAG 1 114 1 TGCGACGCGC 0.997711 -171 CAACGCCTGATGCGACGCTGGCGCGTCTTATCAG 1 199 1 TGCGACGCGC 0.997711 -86 CAATGTCGGATGCGGCGCGAGCGCCTTATCCGAC 3 16 1 TGCGGCGCGC 0.998304 -50 TGTGATGCGGCGTAGACTCATGTCTACGC 10 6 1 TGCGGCGCTC 0.957095 -283 ATTATCAGAGTGCCACTAATCCGCTTCTGAACGG 13 91 1 TGCCACTCGC 0.886863 -210 TCCCTGACTCTGCGGCAATATGGCGTCTTTAGTA 13 162 0 TGCGGCAGGC 0.850162 -139 TAGCGGGATATGCCGCGAGCGGGCGATTTTAGGT 27 41 1 TGCCGCGGGC 0.970635 -230 CAGCGCCGGATGCGGCGTAAGCGCCTTATCCGGC 35 121 0 TGCGGCGCGC 0.998304 -109 CAATGCCTGATGCGACGCTGTCGCGTCTTATCAG 39 13 0 TGCGACGCGC 0.997711 -288 CAATGCCTGATGCGACGCTGTCGCGTCTTATCAG 39 105 0 TGCGACGCGC 0.997711 -196 AGGCCTGATAAGCGACTTGTGCGCATCCGGCAAT 39 139 0 AGCGACTCGC 0.785305 -162 CAATGCCTGATGCGACGCTGTCGCGTCTTATCAG 39 196 0 TGCGACGCGC 0.997711 -105 AGGCATTGATTGCCGTGGATGCGCGCGAGCGCCT 39 222 1 TGCCGTGCGC 0.844654 -79 ATGGAATAAATGGCGCGATAACGCTCATTTTATG 42 142 1 TGGCGCGCGC 0.889609 -159 AAATGCCGGATGCGGCGTGAACGCCTTGTCCGGC 44 18 1 TGCGGCGCGC 0.998304 -136 AACTGCCTGATGCGACGCTGACGCGTCTTATCAG 44 77 0 TGCGACGCGC 0.997711 -77 GATCACACAAAGCGACGGTGGGGCGTAGGGGCAA 45 255 1 AGCGACGGGC 0.919485 -110 GGTTGCCGAATGCGGCGTAAACGCCTTATCCGGC 47 24 0 TGCGGCGCGC 0.998304 -219 CAACGCCTGATGCGACGCTTGCGCGTCTTATCAG 47 57 1 TGCGACGCGC 0.997711 -186 TTATGCCGGATGCGGCGTAAACGCCTTATCCGGC 47 115 0 TGCGGCGCGC 0.998304 -128 TCTCATCCGATGCAACGCCACGGCTGCGGTCTGG 49 197 1 TGCAACGGGC 0.824247 -104 ******* *** Masking position 2 Map Score: 75.0504 Number of sites scoring better than the average of aligned sites = 531 Number in coding regions = 256 Number in noncoding regions = 275 Number of orfs with sites within 600 bp upstream = 88 Fraction of orfs with sites within 600 bp upstream = 0.0141343 Motif number 5 CCAGATAAGACGCGTCAGCGTCGCATCAGGCG 1 32 0 CGCGAGCGTC 0.994496 -253 CCTGATAAGACGCGCCAGCGTCGCATCAGGCG 1 117 0 CGCGAGCGTC 0.994268 -168 CCTGATAAGACGCGCCAGCGTCGCATCAGGCG 1 202 0 CGCGAGCGTC 0.994268 -83 TGTCGGATGCGGCGCGAGCGCCTTATCCGACC 3 19 1 GGCGAGCGCC 0.560684 -47 AGAAGAGAATCGCGGAAACCGCTTCAGACAAG 12 34 0 CGCGAACCGC 0.758051 -267 CGCCGGATGCGGCGTAAGCGCCTTATCCGGCC 35 120 0 GGCGAGCGCC 0.637393 -110 CCTGATAAGACGCGACAGCGTCGCATCAGGCA 39 12 1 CGCGAGCGTC 0.994623 -289 CCTGATAAGACGCGACAGCGTCGCATCAGGCA 39 104 1 CGCGAGCGTC 0.994623 -197 CCTGATAAGACGCGACAGCGTCGCATCAGGCA 39 195 1 CGCGAGCGTC 0.994623 -106 GCCGTGGATGCGCGCGAGCGCCTTATCCGGCC 39 233 1 CGCGAGCGCC 0.963263 -68 GAATAAATGGCGCGATAACGCTCATTTTATGA 42 145 1 CGCGAACGCT 0.856547 -156 TGCCGGATGCGGCGTGAACGCCTTGTCCGGCC 44 21 1 GGCGAACGCC 0.633439 -133 CCTGATAAGACGCGTCAGCGTCGCATCAGGCA 44 76 1 CGCGAGCGTC 0.994496 -78 TGTCGGATAAGGCGTGAAAGCCTTATCCGTCC 44 113 1 GGCGAAAGCC 0.857883 -41 TGCCGAATGCGGCGTAAACGCCTTATCCGGCC 47 23 0 GGCGAACGCC 0.633439 -220 CCTGATAAGACGCGCAAGCGTCGCATCAGGCG 47 60 0 CGCGAGCGTC 0.994268 -183 TGCCGGATGCGGCGTAAACGCCTTATCCGGCC 47 114 0 GGCGAACGCC 0.633439 -129 ATCTGAAAGGGGCGAAAGCCCCTCTGATTATC 47 164 1 GGCGAGCCCC 0.976773 -79 CAGGCAATAGCGCGCTAAACCCGATAATCAGA 47 186 0 CGCGAAACCC 0.688289 -57 **** ****** Masking position 7 Map Score: 60.0209 Number of sites scoring better than the average of aligned sites = 384 Number in coding regions = 275 Number in noncoding regions = 109 Number of orfs with sites within 600 bp upstream = 52 Fraction of orfs with sites within 600 bp upstream = 0.00835207 Motif number 6 TGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGC 5 13 0 GTGATCACAA 0.973391 -110 GGACGATTTTGTGCGTCCCGCAACATCTTTCCCCGTCA 6 21 1 GTGCCAACAT 0.431121 -278 CCGTCATTTTGTTACTCTGCTTACATCACCTGGATTGA 6 53 1 GTTATTACAA 0.317404 -246 ACGATATTTGGTGACAAAACTCACAAAAGACACGCGTT 9 123 0 GTGATCACAA 0.973391 -178 TTTCATATGCCTGACGGAGTTCACACTTGTAAGTTTTC 12 117 1 CTGATCACAT 0.511758 -184 CTTTTTTATGGTGAGCTGGCTCACATCTCCCTGACTCT 13 185 0 GTGATCACAT 0.963757 -116 CATAATTAATGAGATTCAGATCACATATAAAGCCACAA 14 56 1 GAGATCACAT 0.53473 -74 TTAATAATGTGTGCGGCAATTCACATTTAATTTATGAA 15 148 1 GTGCTCACAT 0.895381 -125 ATTTAAAAGTGTTATTTTGATCGCAAAATGAAAGATAA 17 163 0 GTTATCGCAA 0.53355 -93 AAACGAAATTGTGATGTGGATAACATTTTTGCCCCTGA 22 36 0 GTGATAACAT 0.855091 -118 AACAGGATATGTGCGACCACTCACAAATTAACTTTCAA 25 107 0 GTGCTCACAT 0.895381 -82 ATTTTAAGAGGTGATTTTGATCACGGAATAAAAAGTGA 27 124 1 GTGATCACGA 0.700893 -147 TGGGTATAACGTGATCATATCAACAGAATCAATAATGT 28 13 1 GTGACAACAA 0.764105 -179 ACATTTTAGAGTGATATGTATAACATTATGGCGTTTAT 31 99 1 GTGATAACAA 0.890322 -91 GCATTTAAATGTGAGTAGTGTCACATTTTTGTTTTGAT 34 22 0 GTGATCACAT 0.963757 -279 GGTAATTGACGTGACGTTCATCACAAAACGCTTGTGTA 34 95 0 GTGATCACAA 0.973391 -206 CTATATTTATGTGATTGATATCACACAAAAGGCCGTCG 34 143 1 GTGATCACAA 0.973391 -158 AACCGATTCAGTGCCAGATTTCGCAGTATCTACAAGGT 34 192 1 GTGCTCGCAA 0.791203 -109 CCGAACGATTGTGATTCGATTCACATTTAAACAATTTC 37 153 1 GTGATCACAT 0.963757 -90 GGTCTAAAACGTGATCAATTTAACACCTTGCTGATTGA 38 129 0 GTGATAACAT 0.855091 -172 CGTCATGACTGTGATTCCGCCAACATCAACGGTAACAC 38 250 0 GTGACAACAA 0.764105 -51 TTGTGGTGATGTGATGCTCACCGCATTTCCTGAAAATT 40 126 0 GTGACCGCAT 0.773506 -162 AAAGATGAACGTGATGATGTTCACAATTTGCTGAATTG 40 161 0 GTGATCACAT 0.963757 -127 CCTTCTCCTGGTGACATAATCCACATCAATCGAAAATG 42 51 1 GTGACCACAA 0.935885 -250 CAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAA 43 60 0 GTGATTACAA 0.827174 -96 AAGGAATTTCGTGATGTTGCTTGCAAAAATCGTGGCGA 45 174 1 GTGATTGCAA 0.606366 -191 GCGATTTTATGTGCGCATCTCCACATTACCGCCAATTC 45 208 1 GTGCCCACAA 0.824501 -157 GTCGCTTTGTGTGATCTCTGTTACAGAATTGGCGGTAA 45 233 0 GTGATTACAA 0.827174 -132 ATCAGAGGATGTGACATTCATCGCAACAATGGTTGACC 49 30 0 GTGATCGCAA 0.921714 -271 TCTGAAATTGGTTAACCACATCACAAGAATTTCACTCT 49 115 0 GTTATCACAA 0.780412 -186 TTGCGAGTTTGTTAGTATTCTAACATCTACTCCGCAAC 51 195 0 GTTATAACAT 0.364391 -63 **** ***** * Masking position 14 Map Score: 44.99 Number of sites scoring better than the average of aligned sites = 244 Number in coding regions = 106 Number in noncoding regions = 138 Number of orfs with sites within 600 bp upstream = 151 Fraction of orfs with sites within 600 bp upstream = 0.0242531 Motif number 7 AGCGTCGCATCAGGCGTTGAATGCCGGATGCG 1 101 0 CAGGCGTGAT 0.9761 -184 AGCGTCGCATCAGGCGTTGAATGCCGGATGCG 1 186 0 CAGGCGTGAT 0.9761 -99 AATAACCGGGCAGGCCATGTCTGCCCGTATTT 4 12 1 CAGGCCTGTT 0.670957 -40 TACACACATTCGGGCGGGGATTGTACTGACTT 6 116 0 CGGGCGGGAT 0.914089 -183 CTCACTGAATCAGGCTGTTAATCATAAATAAG 15 228 1 CAGGCTTTAT 0.569847 -45 CAGTCCATTGCTGGCGGGTGTTGACCGCTGAC 16 160 0 CTGGCGGTGT 0.55454 -141 AAGTCCGTATCGGGCAGTGACTACCGCTTCCT 17 72 0 CGGGCATGAT 0.892478 -184 GAATTTACGGGCAAGGGTTACAGAGATAG 32 56 0 CGGGCAGGGT 0.833975 -19 TTTACACTTTCAGGAGTGTGTT 33 178 1 CAGGAGGTGT 0.378387 -12 ACTGCGAAATCTGGCACTGAATCGGTTAACTG 34 187 0 CTGGCATGAT 0.839566 -114 CGGCGCAAACCGGGCGGGGTTTTTCGTTTAAG 36 44 1 CGGGCGGGTT 0.833206 -62 AAAATGAGGTCTGGCAGTGGATCCTGACAGGC 38 20 1 CTGGCATGGT 0.844428 -281 AGCGTCGCATCAGGCATTGATTGCCGGATGCG 39 28 1 CAGGCATGAT 0.948951 -273 AGCGTCGCATCAGGCATTGATTGCCGGATGCG 39 120 1 CAGGCATGAT 0.948951 -181 AGCGTCGCATCAGGCATTGATTGCCGTGGATG 39 211 1 CAGGCATGAT 0.948951 -90 GTCGCGAATTCAGGCGCTTTTTAGACTGGTCG 40 241 1 CAGGCGTTTT 0.7743 -47 CCTGACGTGCCAGGCGAGGAGTGAGT 43 140 1 CAGGCGGGAT 0.959723 -16 AGCGTCGCATCAGGCAGTTGTTGTCGGATAAG 44 92 1 CAGGCATTGT 0.775267 -62 TATGCGTCATCAGGAGATGGCTTAAATCCTCC 45 67 1 CAGGAGTGGT 0.853614 -298 TCACCTGTGACAGGCTTTGTGTGTTTTGTGGG 46 15 0 CAGGCTTGTT 0.7766 -57 AGCGTCGCATCAGGCGTTGGTTGCCGAATGCG 47 44 0 CAGGCGTGGT 0.976938 -199 CTGCTTCACGCAGGATCTGAGTTTATGGGAAT 48 88 0 CAGGATTGAT 0.504764 -195 ACGCGGAACCCTGGAGTTGTTTAGGTATCCGG 49 239 0 CTGGAGTGTT 0.426294 -62 ****** *** * Masking position 12 Map Score: 23.8596 Number of sites scoring better than the average of aligned sites = 1330 Number in coding regions = 1239 Number in noncoding regions = 91 Number of orfs with sites within 600 bp upstream = 90 Fraction of orfs with sites within 600 bp upstream = 0.0144555 Motif number 8 GGCCGGATAAGCAAAGCGCATCCGGCATTC 1 85 1 GCAAAGCGCA 0.886589 -200 GGCCGGATAAGCAAAGCGCATCCGGCATTC 1 170 1 GCAAAGCGCA 0.886589 -115 GGCCGGATAAGCAAAGCGCATCCGGCACGA 1 255 1 GCAAAGCGCA 0.886589 -30 GCGCAACGCAATTAATGTGA 5 1 1 GCGCAACGCA 0.976001 -122 GAAAGATGTTGCGGGACGCACAAAATCGTC 6 22 0 GCGGGACGCA 0.951281 -277 TTGGATGATAACGAGGCGCAAAAA 12 287 1 ACGAGGCGCA 0.898939 -14 CATCAAAAATGCGCGACGCATCGCAAATT 14 10 0 GCGCGACGCA 0.978846 -120 TTTTTAACAGACGCGACGCACGAAGAGCGC 16 196 0 ACGCGACGCA 0.868691 -105 TGCCTGATGAGCGTAGCGCATCAGGCATTC 18 51 0 GCGTAGCGCA 0.973924 -54 TAACCAAATCGCGCAACGGAAGGCGACCTG 26 55 1 GCGCAACGGA 0.854297 -246 TTCCCAGGTAGCGGGAAGCATATTTCGGCA 26 221 1 GCGGGAAGCA 0.736256 -80 ACCATTAATTACGAAGCGCAAAAAAAATAA 29 247 1 ACGAAGCGCA 0.886589 -54 GGCCTGATAAGCGTAGCGCATCAGGCAATT 35 48 0 GCGTAGCGCA 0.973924 -182 CGCTCACGATGCGAGGCGGATCGAAAAATT 43 13 1 GCGAGGCGGA 0.8997 -143 CTCAGATCCTGCGTGAAGCAGCAGTAAATC 48 99 1 GCGTGAAGCA 0.771021 -184 AGCGCATCAGGCGTAAAGCATCTTAC 52 7 0 GCGTAAAGCA 0.747432 -120 GGCCTGATAAGCGCAGCGCATCAGGCGTAA 52 21 0 GCGCAGCGCA 0.986555 -106 ********** Masking position 10 Map Score: 20.7774 Number of sites scoring better than the average of aligned sites = 1105 Number in coding regions = 979 Number in noncoding regions = 126 Number of orfs with sites within 600 bp upstream = 83 Fraction of orfs with sites within 600 bp upstream = 0.0133312 Motif number 9 CGGTATGTAACGCCTGATGCGACGCTGACGCGT 1 22 1 CCCTGAGCGC 0.967197 -263 CGGCATTCAACGCCTGATGCGACGCTGGCGCGT 1 107 1 CCCTGAGCGC 0.967197 -178 CGGCATTCAACGCCTGATGCGACGCTGGCGCGT 1 192 1 CCCTGAGCGC 0.967197 -93 TAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGA 5 37 0 ACCTGGGTGC 0.904416 -86 CTGCTTACATCACCTGGATTGATAGTAAAAGTT 6 69 1 CCCTGGTTGT 0.929109 -230 CTTTAAGCGTAACCTGGATTTGCGCAGACAGGC 9 232 0 ACCTGGTTTC 0.501633 -69 ATGCCGAGCACCCCTGGCGATGTAAAGTCTACA 12 163 0 CCCTGGGATT 0.831858 -138 CCATTAACCGCCCCTGACGATGCTCAGGGGCAA 22 13 1 CCCTGAGATC 0.854355 -141 CGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCAT 26 89 0 CCCTGGGTCC 0.966959 -212 CCACTTTTCGCGCCTGGTTTTTTTAGTTTCACG 38 177 0 CCCTGGTTTT 0.806129 -124 GACGTATCGCCTGATTTGCTACCCGTCATG 38 281 0 CCCTGATTGT 0.898341 -20 ACTGGCCTCCTGATGTCGTCAACACGGCG 40 7 1 CCCTGAGTCT 0.918172 -281 GTCTAAAAAGCGCCTGAATTCGCGACCTTCTCG 40 234 0 CCCTGATTCC 0.868701 -54 TTTCATCCTTCTCCTGGTGACATAATCCACATC 42 45 1 CCCTGGGACT 0.869097 -256 AATCGGATCCTGAAGAGTTAATGTTTGTT 42 282 0 ACCTGAGAGT 0.591393 -19 GGATGTAGTACGCCTGACGTGCCAGGCGAGGAG 43 128 1 CCCTGAGTGC 0.978879 -28 TTTAAGCCATCTCCTGATGACGCATAGTCAGCC 45 60 0 CCCTGAGACC 0.887287 -305 AATCCTCCACCCCCTGGCTTTTTTATGGGGGAG 45 91 1 CCCTGGTTTT 0.806129 -274 CGGCAACCAACGCCTGATGCGACGCTTGCGCGT 47 50 1 CCCTGAGCGC 0.967197 -193 GCAGATCTCCTGGCTTGCTTGAATAACTT 48 7 1 CCCTGGTTGT 0.929109 -276 GAGACGCGGAACCCTGGAGTTGTTTAGGTATCC 49 241 0 ACCTGGGTTT 0.630597 -60 TTCATTCTCCTGGCTTGTCGCCAATAAAA 51 239 0 CCCTGGTTGC 0.958416 -19 AGATGCTTTACGCCTGATGCGCTGCGCTTATCA 52 14 1 CCCTGAGCGT 0.943716 -113 * ***** *** * Masking position 5 Map Score: 31.6416 Number of sites scoring better than the average of aligned sites = 729 Number in coding regions = 644 Number in noncoding regions = 85 Number of orfs with sites within 600 bp upstream = 88 Fraction of orfs with sites within 600 bp upstream = 0.0141343 Motif number 10 CGGCCTACAAAATCGCAGCGTGTAGGCCAGA 1 59 0 AATCGAGCGT 0.874467 -226 TAGGCCGGATAAGCAAAGCGCATCCGGCATT 1 83 1 AAGCAAGCGC 0.960369 -202 CGGCCTACAAAATCGCAGCGCGTAGGCCTGA 1 144 0 AATCGAGCGC 0.960371 -141 TAGGCCGGATAAGCAAAGCGCATCCGGCATT 1 168 1 AAGCAAGCGC 0.960369 -117 CGGCCTACAAAATCGCAGCGTGTAGGCCTGA 1 229 0 AATCGAGCGT 0.874467 -56 TAGGCCGGATAAGCAAAGCGCATCCGGCACG 1 253 1 AAGCAAGCGC 0.960369 -32 AATTTGCGATGCGTCGCGCATTTTTGATG 14 9 1 ATGCGCGCGC 0.825811 -121 TATGCCTGATGAGCGTAGCGCATCAGGCATT 18 52 0 GAGCGAGCGC 0.974603 -53 CTAAGGGATAATGCGTAGCGTTCACGTAACT 21 144 1 ATGCGAGCGT 0.896668 -32 TAGGCCTGATAAGCGTAGCGCATCAGGCAAT 35 49 0 AAGCGAGCGC 0.991836 -181 CCGTGAGGAGAGGGGCAGCGCCGGATGCGGC 35 139 0 AGGGGAGCGC 0.820167 -91 TAGGCCTGATAAGCGCAGCGCATCAGGCGTA 52 22 0 AAGCGAGCGC 0.991836 -105 TGGATTTGGGCGGAGCGTTGACTCCGCC 54 8 1 GGGCGAGCGT 0.809116 -49 ***** ***** Masking position 9 Map Score: 17.9124 Number of sites scoring better than the average of aligned sites = 435 Number in coding regions = 331 Number in noncoding regions = 104 Number of orfs with sites within 600 bp upstream = 60 Fraction of orfs with sites within 600 bp upstream = 0.00963701 Motif number 11 GCCTACACGCTGCGATTTTGTAGGCCGGATA 1 63 1 TGCGTTTTGT 0.909788 -222 GCCTACGCGCTGCGATTTTGTAGGCCGGATA 1 148 1 TGCGTTTTGT 0.909788 -137 GCCTACACGCTGCGATTTTGTAGGCCGGATA 1 233 1 TGCGTTTTGT 0.909788 -52 TTGCCGTCACTGCGTCTTTTACTGGCTCTTC 2 30 1 TGCGCTTTTA 0.82354 -271 ACTTTTGTTACGCGTTTTTGTCATGGCTTTG 2 117 0 CGCGTTTTGT 0.838185 -184 AAACGCAATTTGCGCCTTTTTCACTCCCGCA 6 252 1 TGCGCTTTTT 0.935118 -47 GGCATGAAACCGCGTCTTTTTTCAGATAAAA 11 78 1 CGCGCTTTTT 0.880989 -183 TATGAATGATTGCGCTTTTTATCTGAAAAAA 11 94 0 TGCGTTTTTA 0.694682 -167 TCTCCGGCGACGCGGTTTTTAACAGGTGTTC 13 38 0 CGCGTTTTTA 0.538879 -263 TTTTTTTCTTTGCGATTTCTTATTATCAGAG 13 70 1 TGCGTTTCTT 0.621194 -231 TTATTCAACATGCGGCTTTTTTATGGTGAGC 13 207 0 TGCGCTTTTT 0.935118 -94 CGTGATTTCATGCGTCATTTTGAACATTTTG 15 107 1 TGCGCATTTT 0.769251 -166 ACAGTCAGAATGCGGCTTCGTAAGCGCGG 37 9 0 TGCGCTTCGT 0.828412 -234 TGAGCGTTATCGCGCCATTTATTCCATCTGA 42 138 0 CGCGCATTTA 0.35669 -163 CCGAAGGTGATGCGCCATTGTAAGAAGTTTC 51 28 1 TGCGCATTGT 0.827135 -230 AAATTCACCTTGCGAGTTTGTTAGTATTCTA 51 211 0 TGCGGTTTGT 0.72816 -47 GAGCGTTGACTCCGCCTTTGTTATGTCACAA 54 23 1 TCCGCTTTGT 0.603251 -34 **** ****** Masking position 8 Map Score: 13.9526 Number of sites scoring better than the average of aligned sites = 319 Number in coding regions = 275 Number in noncoding regions = 44 Number of orfs with sites within 600 bp upstream = 50 Fraction of orfs with sites within 600 bp upstream = 0.00803084 Motif number 12 AGTCAGTACAATCCCCGCCCGAATGTGTGT 6 117 1 ATCCCCGCCC 0.921424 -182 TTGTTATCCCTGCCCTGGCTCCTTG 8 6 1 ATCCCTGCCC 0.911552 -54 CCTGCCCTGGCTCCTTGCTCAGGGCAATAT 8 19 1 CTCCTTGCTC 0.675748 -41 GCGGCCTTAGCACCCTCTCCGGCCAACGGT 11 36 1 CACCCTCTCC 0.860357 -225 TATCTCTGTAACCCTTGCCCGTAAATTC 32 57 1 ACCCTTGCCC 0.710967 -18 CCTCAGTAAGCTGCCCGCCCTTTTTTACAC 33 155 1 CTGCCCGCCC 0.662203 -35 TCCAATCCCACCCTCTCCACATGGAGAA 35 9 1 CACCCTCTCC 0.860357 -221 CAATTAACCCCACCTTCTCCATGTGGAGAG 35 23 0 CACCTTCTCC 0.793024 -207 CCCTCACCCAAACCCTCTCCGTGAGGAGAG 35 158 0 AACCCTCTCC 0.730379 -72 TTAAACGAAAAACCCCGCCCGGTTTGCGCC 36 45 0 AACCCCGCCC 0.888241 -61 CACACTTTTCATCCTTCTCCTGGTGACATA 42 39 1 ATCCTTCTCC 0.713101 -262 GGCTTAAATCCTCCACCCCCTGGCTTTTTT 45 85 1 CTCCACCCCC 0.745799 -280 ATCCTCCCGCCTCCTCCCCCATAAAAAAGC 45 107 0 CTCCTCCCCC 0.949009 -258 TCTTTCCATCCTCCTTGCCCCTACGCCCCA 45 273 0 CTCCTTGCCC 0.935802 -92 CTCGGAGAGTCCCCTCGCCCCTCTGGGAAG 48 181 1 CCCCTCGCCC 0.864236 -102 GCACGGTTTTCACCCTCTTCCCAGAGGGGC 48 197 0 CACCCTCTTC 0.468322 -86 ACTCGCAGTCATCCTCCCTCACTCCTGCCA 48 231 1 ATCCTCCCTC 0.539149 -52 ********** Masking position 4 Map Score: 8.66804 Number of sites scoring better than the average of aligned sites = 730 Number in coding regions = 612 Number in noncoding regions = 118 Number of orfs with sites within 600 bp upstream = 100 Fraction of orfs with sites within 600 bp upstream = 0.0160617 Motif number 13 AGACGCCATATTGCCGCAGAGTCAGGGAGATGTG 13 168 1 TTGCCGAGTA 0.709382 -133 GTTTCTTGAGTTGCCGCGATGTTAAGAAAACATT 15 184 0 TTGCCGTGTA 0.950521 -89 TTAGATTAGGTTGCCGTTTGGTAATAAAACAATA 17 213 1 TTGCCGGGTA 0.78342 -43 AATTACCTCATTGACGGCATGAAGTGTATCAAAA 25 152 0 TTGACGTGAG 0.884419 -37 GTCAGGAAAATTGACGCAGTGGAGTAGCAAA 26 8 0 TTGACGTGGG 0.8178 -293 CATTTTTGTTTTGATGGTTTGTTGAA 34 3 0 TTGATGTGTG 0.727458 -298 TTAGCGAAAATCGCCGCCTTGTTGCTTTTTTACA 34 65 1 TCGCCGTGTG 0.967908 -236 CCTACAACTGTTGCCGACCTGTAGGCCGGATAAG 39 70 0 TTGCCGTGTG 0.988639 -231 CCTACAACTATTGCCGACCTGTAGGCCTGATAAG 39 161 0 TTGCCGTGTG 0.988639 -140 GATTACTATTTCGCCGTGTTGACGACATCAGGAG 40 17 0 TCGCCGTGAG 0.923155 -271 TGTTCACAATTTGCTGAATTGTGGTGATGTGATG 40 148 0 TTGCTGTGTG 0.923613 -140 GCTAAAAATGTTGCCGATGTGAAGTAAACATGGA 43 97 1 TTGCCGTGAG 0.97196 -59 ****** *** * Masking position 1 Map Score: 7.07245 Number of sites scoring better than the average of aligned sites = 380 Number in coding regions = 354 Number in noncoding regions = 26 Number of orfs with sites within 600 bp upstream = 29 Fraction of orfs with sites within 600 bp upstream = 0.00465789 Motif number 14 TTTAGAAACGCAATTTGCGCCTTTTTCACT 6 247 1 CAATTTGCGC 0.680527 -52 ATCGGCAGTACAATTTGCAGCAAAATAAAA 9 25 0 CAATTTGCAG 0.936663 -276 AGAAGTGACAGAATTTGCTCTTGAGATAAT 10 229 0 GAATTTGCTC 0.61069 -60 TTGTCAGCGACAATTTACAGAAGAGAATCG 12 54 0 CAATTTACAG 0.83967 -247 TGACGTTAAACAATTTACAACGTGAATATA 21 98 0 CAATTTACAA 0.446545 -78 CAAACATTCCCAATTTGCAAAACGAAATTG 22 63 0 CAATTTGCAA 0.694964 -91 TTATGTGTCTGAATTTGCACTGTGTCACAA 29 171 0 GAATTTGCAC 0.884796 -130 GAATTTACGGGCAAGGGTTA 32 65 0 GAATTTACGG 0.653342 -10 ACAATTTGTTGAATTTGCACGTTCTTGTAG 35 91 1 GAATTTGCAC 0.884796 -139 TTGTAATAAGGAATTTACAGAGAATAAACG 38 63 1 GAATTTACAG 0.856436 -238 CGACAACACCGAATTTACAGGAACACAGAA 39 280 1 GAATTTACAG 0.856436 -21 GATACAGCGTGAATTTTCAGGAAATGCGGT 40 115 1 GAATTTTCAG 0.595424 -173 ATGATGTTCACAATTTGCTGAATTGTGGTG 40 156 0 CAATTTGCTG 0.751272 -132 CATGGCAGGCGAATCTGCAGAAAACCTCCG 48 43 1 GAATCTGCAG 0.695638 -240 CCCTTTGCTGCAATTTGCAGCAACAACCAT 49 84 1 CAATTTGCAG 0.936663 -217 ********** Masking position 3 Map Score: 8.92318 Number of sites scoring better than the average of aligned sites = 273 Number in coding regions = 226 Number in noncoding regions = 47 Number of orfs with sites within 600 bp upstream = 47 Fraction of orfs with sites within 600 bp upstream = 0.00754899 Motif number 15 TGGCATAGCAAAGTGTGACGCCGTGCAAAT 2 182 0 AAGTGTGACG 0.956855 -119 AAGATGCGAAAAGTGTGACATGGAATAAAT 11 195 0 AAGTGTGACA 0.846002 -66 TGCAAAACGAAATTGTGATGTGGATAACAT 22 48 0 AATTGTGATG 0.89679 -106 AAAGATTTGGAATTGTGACACAGTGCAAAT 29 159 1 AATTGTGACA 0.742822 -142 AAATTCAACAAATTGTGATGCATCCTGTAG 35 77 0 AATTGTGATG 0.89679 -153 CAATTTGCTGAATTGTGGTGATGTGATGCT 40 146 0 AATTGTGGTG 0.788857 -142 GAAGGATGAAAAGTGTGGCAAACCGTAATC 42 26 0 AAGTGTGGCA 0.702571 -275 TTTTCATGAAAAGTGTGATGAATATTGAAT 43 40 0 AAGTGTGATG 0.942943 -116 TCCGTCTTCAAAGAGTGACGGCAAGGAAGA 50 47 0 AAGAGTGACG 0.738079 -34 AGATTTCCTTAATTGTGATGTGTATCGAAG 51 162 1 AATTGTGATG 0.89679 -96 ATGTGTATCGAAGTGTGTTGCGGAGTAGAT 51 179 1 AAGTGTGTTG 0.722624 -79 ********** Masking position 2 Map Score: 6.50548 Number of sites scoring better than the average of aligned sites = 68 Number in coding regions = 46 Number in noncoding regions = 22 Number of orfs with sites within 600 bp upstream = 31 Fraction of orfs with sites within 600 bp upstream = 0.00497912