AlignACE version 2.2 July 7, 1998 alignACE -a/home/amcguire/genomes/ORF_ecoli.txt -z/home/amcguire/genomes/ecoli.fna -ifur_ecoli_opreg_300.orf -g0.5 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.5 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 entD 165 enterochelin synthetase, component D #2 fepA_fes 320 fepA: outer membrane receptor for ferric enterobactin (enterochelin) and colicins B and D, fes: enterochelin esterase #3 entF 217 ATP-dependent serine activating enzyme (may be part of enterobactin synthase as component F) #4 fepE 215 ferric enterobactin (enterochelin) transport #5 fepB_entC 374 fepB: ferric enterobactin (enterochelin) binding protein; periplasmic component, entC: isochorismate hydroxymutase 2, enterochelin biosynthesis #6 fur 288 negative regulator #7 fldA 139 flavodoxin 1 #8 ybfE 70 orf, hypothetical protein #9 ybfF 184 orf, hypothetical protein #10 tonB 127 energy transducer; uptake of iron, cyanocobalimin; sensitivity to phages, colicins #11 cirA 293 outer membrane receptor for iron-regulated colicin I receptor; porin; requires tonB gene product #12 lysP 204 lysine-specific permease #13 yeiE 98 putative transcriptional regulator LYSR-type #14 sodA 284 superoxide dismutase, manganese Motif number 1 CGCCGTCACACCATAACCCCATGTTTACTG 2 80 1 CCATAACCCC 0.895914 -241 CCGTTCTGCCCCCTCTCCCTTCCAGGGTGA 5 209 1 CCCTCTCCCT 0.994441 -166 CTCACCCCAGCCCTCACCCTGGAAGGGAGA 5 222 0 CCCTCACCCT 0.996196 -153 CGAACATTAACCCTCACCCCAGCCCTCACC 5 234 0 CCCTCACCCC 0.996488 -141 CTGGCTGTTCCCCTCACCCTAACCCTCTCC 5 272 1 CCCTCACCCT 0.996196 -103 CTCACCCTAACCCTCTCCCCAAAGGGGCGA 5 284 1 CCCTCTCCCC 0.994867 -91 ACAATCCGTCCCCTCGCCCCTTTGGGGAGA 5 297 0 CCCTCGCCCC 0.988675 -78 TGTCATTACGCCCTTAACCTTATTAATAAC 5 342 1 CCCTTAACCT 0.802501 -33 CAACATAATACCCTAACCCGACAACGCGAA 9 150 1 CCCTAACCCG 0.940715 -35 TTTTTCAATTCCATTTCCCTGACAAATCAT 11 52 1 CCATTTCCCT 0.844397 -242 AACCCTCTCCTTTAACCGGGCA 13 3 1 CCCTCTCCTT 0.933751 -96 ********** Masking position 4 Map Score: 23.739 Number of sites scoring better than the average of aligned sites = 185 Number in coding regions = 70 Number in noncoding regions = 115 Number of orfs with sites within 600 bp upstream = 34 Fraction of orfs with sites within 600 bp upstream = 0.00546097 Motif number 2 AGGCGTTCACGCCGCATCCGGCATGAACGACG 1 40 0 GCCGATCCGC 0.503127 -126 CGGCGTGAACGCCTTATCCGGCCTACAAAAAT 1 58 1 GCCTATCCGC 0.659477 -108 TTTCGCGGTAGCGGGATGCGTCGTGTTGATGA 2 249 1 GCGGATGCGC 0.984562 -72 TTTACATATTGCGCAATGCGCAGGGGCAATTC 3 53 1 GCGCATGCGA 0.86838 -165 ACGCATTGTTGCGGCCACAGACTGAATTGCCC 3 76 0 GCGGCACAGC 0.973347 -142 TGTGTCAGCCGCAGTCACAGGCGTCCTGCCAG 3 131 1 GCAGCACAGC 0.809284 -87 AAGCCCACTGGCGTACTCTGACACCGACGAAT 3 173 1 GCGTCTCTGC 0.673239 -45 TCGACAAAGCGCACAATCCGTCCCCTCGCCCC 5 307 0 GCACATCCGC 0.906445 -68 GCGGAATCTGTCCTGTTACTAA 6 277 0 GCGGATCTGC 0.974691 -12 AGGCAGTCTTGCGGAATCAGCAAACGAGCAGG 7 42 0 GCGGATCAGA 0.945725 -98 ACGCCCACGCGCGGAAAGCGACGCGGACGCTG 8 29 0 GCGGAAGCGC 0.988585 -42 CAGCGCGATGAGTCACGCCAACGC 8 57 0 GCGCATGAGC 0.961876 -14 AATCCCGGCAGCGGATAGCGTCAAGCCTGGCT 9 65 1 GCGGTAGCGC 0.942505 -120 ATCCCAGAAAGCCGGAACAGCCTCTGATTTGT 11 159 0 GCCGAACAGC 0.942595 -135 TCGTGACGCAGCGCCTTCAGCATGCATTCGCC 12 47 1 GCGCTTCAGA 0.550431 -158 ATCTTTATAAGTGGTAAGCGACT 13 86 1 GTGGAAGCGC 0.812424 -13 ATCGACAACGGCGGCAACAGGCGAAAGGTTAA 14 80 0 GCGGAACAGC 0.980334 -205 **** ***** * Masking position 10 Map Score: 22.1517 Number of sites scoring better than the average of aligned sites = 2367 Number in coding regions = 1832 Number in noncoding regions = 535 Number of orfs with sites within 600 bp upstream = 163 Fraction of orfs with sites within 600 bp upstream = 0.0261805 Motif number 3 AGTGCGCGTCGTTCATGCCGGATGCGGCGTG 1 34 1 GTTATGCCGG 0.852807 -132 CGGATAAGGCGTTCACGCCGCATCCGGCATG 1 47 0 GTTACGCCGC 0.982827 -119 ACTTCCTACTTTTAACGCCGTCACACCATAA 2 65 1 TTTACGCCGT 0.758564 -256 GTAAACATGGGGTTATGGTGTGACGGCGTTA 2 77 0 GGTATGGTGT 0.513813 -244 TTTGCAATAGCGTAATGGCGCGCCGTGGGAA 2 167 1 CGTATGGCGC 0.908138 -154 AGGGGGAAATCTCCACGGCGCTCACTTTACC 4 168 0 CTCACGGCGC 0.934164 -48 TATTAATAAGGTTAAGGGCGTAATGACAAAT 5 339 0 GTTAGGGCGT 0.695098 -36 GTAGACATGAGTCTACGCCGCATCACA 6 7 0 GTCACGCCGC 0.983434 -282 GTAGACTCATGTCTACGCCGTATTAATAGAT 6 22 1 GTCACGCCGT 0.976393 -267 GTGTTCAAGTGGCCTTGCCGTTGTAAATGTA 6 117 1 GGCTTGCCGT 0.818501 -172 TCCGCGCGTGGGCGTTGGCGTGACTCATCGC 8 46 1 GGCTTGGCGT 0.63957 -25 TTTGCATTATCGTTACGCCGCAATCAAAAAA 11 123 1 CGTACGCCGC 0.973017 -171 ATAAGTCCACCGCGATGCTGCCGTACGCAAG 11 208 1 CGCATGCTGC 0.708362 -86 GTGTCGATTTCGTGACGCAGCGCCTTCAGCA 12 38 1 CGTACGCAGC 0.655893 -167 CCTTTCGCCTGTTGCCGCCGTTGTCGATTTA 14 84 1 GTTCCGCCGT 0.834898 -201 AAATCACCCACTTAATGCCGTGATTGCCAGT 14 114 0 CTTATGCCGT 0.94406 -171 GAAAATGATTATCAATGCCGTACTTTTCGTA 14 184 0 ATCATGCCGT 0.694236 -101 GCGGCCGATTGTTAATGCCGCGTAAGCAGTT 14 243 0 GTTATGCCGC 0.975535 -42 *** ******* Masking position 7 Map Score: 15.2308 Number of sites scoring better than the average of aligned sites = 3921 Number in coding regions = 3532 Number in noncoding regions = 389 Number of orfs with sites within 600 bp upstream = 218 Fraction of orfs with sites within 600 bp upstream = 0.0350145 Motif number 4 GAAATATATTGATAATATTATTGATAACTATTTGCAT 2 131 1 GAAATAGATA 0.938926 -190 GTTAGCGACCGAAAATATAAATGATAATCATTATTAA 5 38 0 GAAATAGATA 0.938926 -337 TGGTTACAATGAAAATGAGAAGCATTATTGATGGATT 5 145 1 GAAATGCATA 0.977322 -230 CGTATTAATAGATAATGCCAATCAAAATAATTGCTAC 6 40 1 GAAATGCAAA 0.786664 -249 TTGCTCTTGAGATAATGCGTATCATTATAGAATTGCC 6 208 0 GAAATGCATA 0.977322 -81 AGCAGGACTGCACACTGTGCTACATGAAAGTGGAAAT 7 11 0 CAACTGCATA 0.693647 -129 ATTCAGCTAAGACACTGCACTGGATTAAG 9 3 0 GAACTGGATA 0.950113 -182 AGCCCTGTGGCACAATGGTCAACATAATACCCTAACC 9 131 1 CAAATGCATA 0.894002 -54 GCGGCGTAACGATAATGCAAACGATAACAATTATCAA 11 107 0 GAAATGGATA 0.9861 -187 GGGACGTGAAGAAGATGTGAGCGATAACCCATTTTAT 11 239 1 GAGATGGATA 0.899969 -55 ACAAAAATGCTATCCATCTTAAAAATGAG 12 186 0 AAAATGCATT 0.557761 -19 TAACTGGTTTAAAAATAAAATTGATTATATATTTATA 13 45 1 AAAATAGATA 0.735952 -54 TGACGCGACGAAAAATGATGAGGATAAGAAG 14 5 0 AAAATGGATA 0.927859 -280 GGTTTTGCAGGAAAATGCCCGAGATGTGAAGCAAATC 14 140 0 GAAATGGATT 0.919692 -145 TTAATTAAATGATATTGAAAATGATTATCAATGCCGT 14 194 0 GAATTGGATA 0.874725 -91 TCGGCCGCCCGACAATACTGGAGATGAAT 14 266 1 GAAATAGATA 0.938926 -19 ** **** *** * Masking position 6 Map Score: 16.4653 Number of sites scoring better than the average of aligned sites = 564 Number in coding regions = 487 Number in noncoding regions = 77 Number of orfs with sites within 600 bp upstream = 93 Fraction of orfs with sites within 600 bp upstream = 0.0149374 Motif number 5 TGTTTCGACTGCCACCAGCTCTCACTTCCTACT 2 42 1 GCACCGCCTC 0.932059 -279 TCAACACGACGCATCCCGCTACCGCGAAAACCT 2 245 0 GCTCCGCACC 0.993947 -76 ATATGGCATTCAGTAATCCCTTCGATGA 3 6 1 GCTTCGTATC 0.82474 -212 GCAGTCACAGGCGTCCTGCCAGCAGTGGCTGGA 3 141 1 GCTCCGCAGC 0.987272 -77 ACGCCAGTGGGCTTCCAGCCACTGCTGGCAGGA 3 154 0 GCTCCGCACT 0.986829 -64 TGTGCCTCCTGCAACTGGGTAAAATT 3 202 0 GCTCCGCACT 0.986826 -16 TTGAGGTAACGCAATCTGCAACTCGGGGTTGCA 5 104 1 GCATCGCACT 0.94332 -271 ATGTCCTGCGCCGTTCTGCCCCCTCTCCCTTCC 5 199 1 CCTTCGCCCC 0.886761 -176 AAATCAGCTTCCTGTTATTAATAAGGTTA 5 356 0 GCTCCGTATT 0.773338 -19 CGTCCGCGTCGCTTTCCGCGCGTGGGCGTTGGC 8 32 1 GCTTCGCCGT 0.94496 -39 CAGGCTTGACGCTATCCGCTGCCGGGATTTATT 9 61 0 GCATCGCGCC 0.906872 -124 GTGACGCAGCGCCTTCAGCATGCATTCGCCAGA 12 49 1 GCTTCGCTGC 0.893799 -156 ** *** ** *** Masking position 6 Map Score: 11.3768 Number of sites scoring better than the average of aligned sites = 1359 Number in coding regions = 1204 Number in noncoding regions = 155 Number of orfs with sites within 600 bp upstream = 76 Fraction of orfs with sites within 600 bp upstream = 0.0122069 Motif number 6 GCATGAACGACGCGCACTTTGTCAACAATCTGA 1 19 0 CGGCATTGTC 0.919662 -147 CGTAGCGCATCAGGCAGTTTTGCGTTTGTCATC 1 133 1 CAGCATTTGC 0.95543 -33 GCTGCCATTCCGGGCCATGTTTCGACTGCCACC 2 25 1 CGGCCTTTTC 0.919663 -296 CCATGTTTACTGTGCAATTTTTCATTGATTGCA 2 98 1 TGGCATTTTC 0.889177 -223 TGTTTTATTCCTGCATTTTTGCCACGAATTGC 2 299 0 CCGCATTTGC 0.971188 -22 CTGCCGGTAAGACGCATTGTTGCGGCCACAGAC 3 86 0 GAGCATTTGC 0.844715 -132 TAAAAGCAAACGCGCACTATGTCAACTCTTGAG 5 76 1 CGGCATTGTC 0.919661 -299 TGTGATGTCCTGCGCCGTTCTGCCCCCTCTCCC 5 195 1 TGGCCTCTGC 0.866391 -180 AGGGGAACAGCCAGCACTGGTGCGAACATTAAC 5 253 0 CCGCATGTGC 0.863201 -122 TGTAGCACAGTGTGCAGTCCTGCTCGTTTGCTG 7 24 1 TGGCATCTGC 0.933733 -116 CATAGCAGAACAGGCAGTCTTGCGGAATCAGCA 7 52 0 CAGCATTTGC 0.95543 -88 CCTTTATCCGTGGGCAATTTTCCACCCCCATTT 7 89 1 TGGCATTTCC 0.783287 -51 CTTATTTGTTGCAGCCCTGTGGCACAATGGTCA 9 119 1 GCGCCTTGGC 0.655352 -66 GTCTTATAACCGTGTATTTCTGCCGGAAGGATT 12 129 1 CGGTATCTGC 0.726727 -76 ** *** * **** Masking position 8 Map Score: 10.7704 Number of sites scoring better than the average of aligned sites = 1053 Number in coding regions = 926 Number in noncoding regions = 127 Number of orfs with sites within 600 bp upstream = 95 Fraction of orfs with sites within 600 bp upstream = 0.0152586 Motif number 7 TCAGCTTCGGATAATTATCACCAACTGGTA 4 142 1 ATAATTATCA 0.703737 -74 GGCTTTAATAATGATTATCATTTATATTTT 5 34 1 ATGATTATCA 0.818772 -341 GCCAATCAAAATAATTGCTACAAATTTGTA 6 56 1 ATAATTGCTA 0.866048 -233 TTTATTAACAATATTTGCCAGGGACTTGTG 6 162 1 ATATTTGCCA 0.768327 -127 GTATCATTATAGAATTGCCACGCCTAAATG 6 197 0 AGAATTGCCA 0.909235 -92 CTGTTCTGCTATGATTGCCTTTATCCGTGG 7 72 1 ATGATTGCCT 0.863159 -68 CTTATTGAATATGATTGCTATTTGCATTTA 10 66 1 ATGATTGCTA 0.924795 -62 ATTTGGATTGATAATTGTTATCGTTTGCAT 11 100 1 ATAATTGTTA 0.703737 -194 TTCTGCCGGAAGGATTGCCAATCGTCTGCT 12 146 1 AGGATTGCCA 0.950132 -59 ACTTAATGCCGTGATTGCCAGTAAATCGAC 14 106 0 GTGATTGCCA 0.903371 -179 GATATTGAAAATGATTATCAATGCCGTACT 14 191 0 ATGATTATCA 0.818772 -94 ********** Masking position 5 Map Score: 4.90274 Number of sites scoring better than the average of aligned sites = 742 Number in coding regions = 682 Number in noncoding regions = 60 Number of orfs with sites within 600 bp upstream = 76 Fraction of orfs with sites within 600 bp upstream = 0.0122069 Motif number 8 ATTATCAATATATTTCTGCAATCAATGAAA 2 117 0 TATTTCTGCA 0.973346 -204 TGTTTTATTCCTGCATTTTTGCCAC 2 306 0 TATTCCTGCA 0.968026 -15 TTATTCCGAGTTTTTCTGCAAGCCAGGCTT 9 87 0 TTTTTCTGCA 0.973346 -98 GTGGACTTATTTTTTATGCAGGTGATCATC 11 188 0 TTTTTATGCA 0.849611 -106 TATAACCGTGTATTTCTGCCGGAAGGATTG 12 133 1 TATTTCTGCC 0.930327 -72 ATCTCGGGCATTTTCCTGCAAAACCATACC 14 152 1 TTTTCCTGCA 0.968026 -133 ********** Masking position 4 Map Score: 4.68644 Number of sites scoring better than the average of aligned sites = 118 Number in coding regions = 99 Number in noncoding regions = 19 Number of orfs with sites within 600 bp upstream = 24 Fraction of orfs with sites within 600 bp upstream = 0.0038548 Motif number 9 GTTGACAAAGTGCGCGTCGTTCATGCCGGAT 1 26 1 TGCGCGTGTT 0.920914 -140 TATTGCGCAATGCGCAGGGGCAATTCAGTCT 3 59 1 TGCGCAGGGC 0.916397 -159 GTTGACATAGTGCGCGTTTGCTTTTAGGTTA 5 71 0 TGCGCGTTGC 0.990501 -304 GACATCACATTGCGCTTATGCGAATCCATCA 5 173 0 TGCGCTTTGC 0.966039 -202 GGACGGATTGTGCGCTTTGTCGAATTTGTCA 5 316 1 TGCGCTTGTC 0.966039 -59 TGTGCAGTCCTGCTCGTTTGCTGATTCCGCA 7 34 1 TGCTCGTTGC 0.920914 -106 CGTCGCTTTCCGCGCGTGGGCGTTGGCGTGA 8 38 1 CGCGCGTGGC 0.986083 -33 AGTTCTTTTTTTCGCGTTGTCGGGTTAGGGT 9 159 0 TTCGCGTGTC 0.920914 -26 ******* *** Masking position 5 Map Score: 5.18947 Number of sites scoring better than the average of aligned sites = 657 Number in coding regions = 634 Number in noncoding regions = 23 Number of orfs with sites within 600 bp upstream = 20 Fraction of orfs with sites within 600 bp upstream = 0.00321234 Motif number 10 AGACTGATGACAAACGCAAAACTGCCTGAT 1 141 0 CAAACGCAAA 0.933802 -25 TACGCTATTGCAAATGCAAATAGTTATCAA 2 151 0 CAAATGCAAA 0.960077 -170 GTCGCTAACCTAAAAGCAAACGCGCACTAT 5 66 1 TAAAAGCAAA 0.920909 -309 TGTACAGGTACAACAGCAAAAGTTACAAAT 6 79 0 CAACAGCAAA 0.897888 -210 TTGCCACGCCTAAATGAAAACCACAAGTCC 6 183 0 TAAATGAAAA 0.60164 -106 CGCATTATCTCAAGAGCAAATTCTGTCACT 6 226 1 CAAGAGCAAA 0.897888 -63 GTCTCGATTTTAAATGCAAATAGCAATCAT 10 76 0 TAAATGCAAA 0.920909 -52 ********** Masking position 3 Map Score: 2.03875 Number of sites scoring better than the average of aligned sites = 247 Number in coding regions = 196 Number in noncoding regions = 51 Number of orfs with sites within 600 bp upstream = 42 Fraction of orfs with sites within 600 bp upstream = 0.0067459 Motif number 11 GACACGCAGTGCAGTTGGTTAATTAATGTC 2 203 0 GCAGTTGGTT 0.947121 -118 TGTGCCTCCTGCAACTGGGTAAAATTCGTC 3 198 0 GCAACTGGGT 0.937436 -20 ACTCGGGGTTGCATCTGGTTGTGGTTACAA 5 124 1 GCATCTGGTT 0.963584 -251 TTAATAACAGGAAGCTGATTT 5 364 1 GAAGCTGATT 0.875019 -11 CGCAACTGATTAAAAACCCAG 8 2 1 GCAACTGATT 0.91184 -69 AAGCGACGCGGACGCTGGGTTTTTAATCAG 8 16 0 GACGCTGGGT 0.851706 -55 AGCCGGAACAGCCTCTGATTTGTCAGCCTT 11 152 0 GCCTCTGATT 0.854163 -142 TGCCGCGTAAGCAGTTGGTTCATTATAGTT 14 229 0 GCAGTTGGTT 0.947121 -56 ********** Masking position 6 Map Score: 3.55385 Number of sites scoring better than the average of aligned sites = 880 Number in coding regions = 855 Number in noncoding regions = 25 Number of orfs with sites within 600 bp upstream = 28 Fraction of orfs with sites within 600 bp upstream = 0.00449727 Motif number 12 TGCAATATATTGAATTGGCAAGATTTTTGTAG 1 80 0 TGATGGCAAG 0.74216 -86 AGGACGCCTGTGACTGCGGCTGACACACAATG 3 126 0 TGATCGGCTG 0.944779 -92 CGTCGGTGTCAGAGTACGCCAGTGGGCTTCCA 3 170 0 AGATCGCCAG 0.965321 -48 GCTCGTTTGCTGATTCCGCAAGACTGCCTGTT 7 45 1 TGATCGCAAG 0.945626 -95 CACGTCCCCTTGCGTACGGCAGCATCGCGGTG 11 215 0 TGCTCGGCAG 0.986689 -79 GCCTTCAGCATGCATTCGCCAGAAAAGAGATT 12 59 1 TGCTCGCCAG 0.991777 -146 CGATTGGCAATCCTTCCGGCAGAAATACACGG 12 138 0 TCCTCGGCAG 0.963271 -67 CTGTCGATTAACCTTTCGCCTGTTGCCGCCGT 14 73 1 ACCTCGCCTG 0.851157 -212 *** * ****** Masking position 5 Map Score: 2.71814 Number of sites scoring better than the average of aligned sites = 966 Number in coding regions = 885 Number in noncoding regions = 81 Number of orfs with sites within 600 bp upstream = 58 Fraction of orfs with sites within 600 bp upstream = 0.00931577 Motif number 13 CGTTAAAAGTAGGAAGTGAGAGCTGGTGGC 2 52 0 AGGAAGTGAG 0.921566 -269 CTGCGGATCATCGAAGGGATTACTGAATGC 3 16 0 TCGAAGGGAT 0.917183 -202 TTGCATTCAGTGGAAGGAATTTACAAACTT 4 113 1 TGGAAGGAAT 0.881967 -103 GCCCTCACCCTGGAAGGGAGAGGGGGCAGA 5 213 0 TGGAAGGGAG 0.988746 -162 GGGCTTAGCAAGGAAGGGAGGAAAC 11 6 0 AGGAAGGGAG 0.983953 -288 ********** Masking position 5 Map Score: 0.647892 Number of sites scoring better than the average of aligned sites = 54 Number in coding regions = 44 Number in noncoding regions = 10 Number of orfs with sites within 600 bp upstream = 13 Fraction of orfs with sites within 600 bp upstream = 0.00208802 Motif number 14 TGATGCGCTACGCTTATCAGGCCTACATGGT 1 114 0 CGTTATCAGG 0.894125 -52 CTGCACTGCGTGTCTTTCAGGATCAAAGGTT 2 219 1 TGCTTTCAGG 0.838726 -102 CGCAACAATGCGTCTTACCGGCAGGCTGGGA 3 95 1 CGCTTACCGG 0.962786 -123 GAGGCTGTTCCGGCTTTCTGGGATGATCACC 11 167 1 CGCTTTCTGG 0.986808 -127 AGCAGCCAATCTCTTTTCTGGCGAATGCATG 12 67 0 CTTTTTCTGG 0.824504 -138 CATAAGGTTACGACTAACTGGTTTAAAAATA 13 31 1 CGCTAACTGG 0.961474 -68 CCGCCGTTGTCGATTTACTGGCAATCACGGC 14 98 1 CGTTTACTGG 0.965274 -187 ** ******** Masking position 5 Map Score: 1.19869 Number of sites scoring better than the average of aligned sites = 464 Number in coding regions = 431 Number in noncoding regions = 33 Number of orfs with sites within 600 bp upstream = 42 Fraction of orfs with sites within 600 bp upstream = 0.0067459 Motif number 15 ********** No masking Map Score: 3.19987e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0