AlignACE version 2.2 July 7, 1998 alignACE -a/home/amcguire/genomes/ORF_ecoli.txt -z/home/amcguire/genomes/ecoli.fna -irpoN_ecoli_opreg_300.orf -g0.5 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.5 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 glnP 138 glutamine high-affinity transport system; membrane component #2 glnH 300 periplasmic glutamine-binding protein; permease #3 pspF 151 psp operon transcriptional activator #4 hycB 124 probable small subunit of hydrogenase-3, iron-sulfur protein (part of formate hydrogenlyase (FHL) complex) #5 hycA_hypA 211 hycA: transcriptional repression of hyc and hyp operons, hypA: pleiotrophic effects on 3 hydrogenase isozymes #6 hypE 38 plays structural role in maturation of all 3 hydrogenases #7 glnL 285 histidine protein kinase sensor for GlnG regulator (nitrogen regulator II, NRII) #8 glnA 300 glutamine synthetase #9 fdhF 197 selenopolypeptide subunit of formate dehydrogenase H #10 yjcQ 140 putative enzyme #11 yjcR 300 putative membrane protein Motif number 1 AACTGCCAGTGCGTTTTACAGGTGTAGCGTTA 1 9 0 GCTTCAGGTG 0.884131 -130 GGCAGTTCCCTCTCCCCTATGGGGAGAGGATTAG 1 36 1 TCCCATGGGG 0.7856 -103 CCATTCTGGGGCACCAATCTGGTGCGCTAAAATT 2 130 0 GCCCCTGGTG 0.994162 -171 TTTTCGAGATGCGGCAAAAACGTGATGCACGATT 2 189 0 GCGCAACGTG 0.823714 -112 GACACGCCCATCCCCAAACAGGCGTAACGCCTGC 4 31 0 TCCCCAGGCG 0.978496 -94 CAGGCATTCCTCAGGTGATTGTCATTT 4 108 0 GCTTCAGGTG 0.884131 -17 GCCCACGGTAGCGGCGGCCAGGCG 6 25 1 GCGCCAGGCG 0.993963 -14 TCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCC 7 27 0 GCAGCAGGCG 0.806926 -259 AAGCTATAATGCACTAAAATGGTGCAACCTGTTC 7 249 1 GCCTATGGTG 0.96485 -37 CCCTTTTTATGCTCCGTGAAAGCGATCACAAAGG 8 41 0 GCCCAAAGCG 0.870433 -260 AAAGGTCATTGCACCAACATGGTGCTTAATGTTT 8 81 1 GCCCATGGTG 0.989516 -220 TTCCATTGAAGCACTATATTGGTGCAACATTCAC 8 113 1 GCCTTTGGTG 0.812285 -188 CTTTTAAATTGCCCCTAAAAGGCGTTATCATGCG 8 177 0 GCCCAAGGCG 0.99267 -124 AATGTCTGCCGCGTGATGGCTGTCACGCGGT 9 8 1 GCGCATGGCT 0.819004 -190 TTACCGGTGGTCAGGCTGCTGGCGTTCTTTCATG 10 34 1 TCGGCTGGCG 0.857107 -107 AGTTAAGCGAGCGGCGACCAGGTCGCGTGCCGCA 10 71 1 GCGCCAGGTC 0.893967 -70 CTCTGGGTAGGCTGCCTGCTGGTGATTCTGATCT 10 115 1 GCGCCTGGTG 0.991357 -26 CCAACAGTTCTCTCTCGCATGGCGATGCAACTCA 11 20 1 TCCTATGGCG 0.880017 -281 ** ** ****** Masking position 12 Map Score: 22.2122 Number of sites scoring better than the average of aligned sites = 3601 Number in coding regions = 3437 Number in noncoding regions = 164 Number of orfs with sites within 600 bp upstream = 160 Fraction of orfs with sites within 600 bp upstream = 0.0256987 Motif number 2 AAGGAGTTGCAAAACTGGCACGATTTTTTC 2 226 1 AAAACTGGCA 0.972231 -75 AAAAAGATAAAAAATTGGCACGCAAATTGT 3 63 0 AAAATTGGCA 0.863899 -89 TAACGCCTGCAAAACGGGCAAAGCCTCAGC 4 11 0 AAAACGGGCA 0.816179 -114 ATTATTGCTTGTAGCTGGCAATAGTTAATG 5 20 0 GTAGCTGGCA 0.955827 -192 AGGGATAATCAACACTGGCACAATTATTGC 5 42 0 AACACTGGCA 0.946451 -170 CAATAAATTAAAAGTTGGCACAAAAAATGC 5 155 1 AAAGTTGGCA 0.956677 -57 AAAAATGCTTAAAGCTGGCATCTCTGTTAA 5 177 1 AAAGCTGGCA 0.991857 -35 CTTTTCGCCTGTCTCTGGCAGGCCTGGGAT 7 32 1 GTCTCTGGCA 0.706864 -254 CAGGCCTGGGATCGGTGGCAAGCACATCAC 7 50 1 ATCGGTGGCA 0.880456 -236 TGGGCTACAGATAGCTGACAAACTTCACGT 7 159 0 ATAGCTGACA 0.808356 -127 GGGCAATTTAAAAGTTGGCACAGATTTCGC 8 197 1 AAAGTTGGCA 0.956677 -104 CTGCCGCGTGATGGCTGTCACGCGGTATTT 9 16 1 ATGGCTGTCA 0.680446 -182 ACCCCACATAAAATGTGGCATAAAAGATGC 9 126 1 AAATGTGGCA 0.840314 -72 GCGTCAAAATAAGGCTGGCAATGGCGCAGA 11 150 0 AAGGCTGGCA 0.983997 -151 GGGCAAATATCAATCTGGCATTTGTCGGAA 11 204 1 CAATCTGGCA 0.886424 -97 CCATGCTGTTCTGGCTGGCATTTTTCTAAT 11 264 1 CTGGCTGGCA 0.916132 -37 ********** Masking position 10 Map Score: 21.791 Number of sites scoring better than the average of aligned sites = 1632 Number in coding regions = 1521 Number in noncoding regions = 111 Number of orfs with sites within 600 bp upstream = 121 Fraction of orfs with sites within 600 bp upstream = 0.0194346 Motif number 3 AAAAAATCGTGCCAGTTTTGCAACTCCTTG 2 225 0 GCCAGTTTTG 0.992068 -76 CAATTTGCGTGCCAATTTTTTATCTTTTTG 3 64 1 GCCAATTTTT 0.919242 -88 CTGAGGCTTTGCCCGTTTTGCAGGCGTTAC 4 12 1 GCCCGTTTTG 0.979593 -113 CAGGCGTTACGCCTGTTTGGGGATGGGCGT 4 32 1 GCCTGTTTGG 0.830357 -93 TCAGGTGATTGTCATTTTTGACGAAAACAT 4 95 0 GTCATTTTTG 0.73231 -30 CAATAATTGTGCCAGTGTTGATTATCCCTG 5 43 1 GCCAGTGTTG 0.955499 -169 CATTTTTTGTGCCAACTTTTAATTTATTGT 5 154 0 GCCAACTTTT 0.893143 -58 TAACAGAGATGCCAGCTTTAAGCATTTTTT 5 176 0 GCCAGCTTTA 0.947603 -36 CGAAATCTGTGCCAACTTTTAAATTGCCCC 8 196 0 GCCAACTTTT 0.893143 -105 ACAGGCTGTCGTCAGTTTTGACGTGACGAA 9 49 0 GTCAGTTTTG 0.940565 -149 ACTGACGACAGCCTGTTTTTCGTCAGAGTT 9 63 1 GCCTGTTTTT 0.919366 -135 CTGCGCCATTGCCAGCCTTATTTTGACGCT 11 151 1 GCCAGCCTTA 0.756373 -150 TATTTATACCGCCCTTTTTGCTCTCTACGC 11 235 1 GCCCTTTTTG 0.892454 -66 ********** Masking position 8 Map Score: 14.1229 Number of sites scoring better than the average of aligned sites = 1083 Number in coding regions = 991 Number in noncoding regions = 92 Number of orfs with sites within 600 bp upstream = 96 Fraction of orfs with sites within 600 bp upstream = 0.0154192 Motif number 4 CTCATCCTGGCATGTTGCTGTTGATTCTTC 3 112 0 CATGTTGCTG 0.936471 -40 TGGGGATGGGCGTGTCGATGAGTGTCGAAA 4 49 1 CGTGTCGATG 0.938768 -76 TTGACGAAAACATGCCGATGAAATGTCATT 4 78 0 CATGCCGATG 0.948244 -47 ACAATTATTGCTTGTAGCTGGCAATAGTTA 5 23 0 CTTGTAGCTG 0.681938 -189 ATTTCGTCGCCGTGTCGACGTGTCATTTCG 5 95 0 CGTGTCGACG 0.954857 -117 CGCCTGGCCGCCGCTACCGTGGG 6 26 0 CTGGCCGCCG 0.966472 -13 GCGTGATGTGCTTGCCACCGATCCCAGGCC 7 52 0 CTTGCCACCG 0.733027 -234 CATTAAGCACCATGTTGGTGCAATGACCTT 8 82 0 CATGTTGGTG 0.656226 -219 ACATTCACATCGTGGTGCAGCCCTTTTGCA 8 139 1 CGTGGTGCAG 0.846253 -162 TTATTTTGGCCGTGTCGCCGTAAAAAAGAT 8 230 0 CGTGTCGCCG 0.986548 -71 TGACGAAAAACAGGCTGTCGTCAGTTTTGA 9 58 0 CAGGCTGTCG 0.706529 -140 TACCGGTGGTCAGGCTGCTGGCGTTCTTTC 10 35 1 CAGGCTGCTG 0.918768 -106 GGCACGCGACCTGGTCGCCGCTCGCTTAAC 10 72 0 CTGGTCGCCG 0.954192 -69 GACCAGGTCGCGTGCCGCAGACCGTGCAAC 10 86 1 CGTGCCGCAG 0.97096 -55 TTCTCTCTCGCATGGCGATGCAACTCAAAA 11 27 1 CATGGCGATG 0.903024 -274 GCCAGAACAGCATGGCGTAGAGAGCAAAAA 11 249 0 CATGGCGTAG 0.696269 -52 ********** Masking position 4 Map Score: 16.6592 Number of sites scoring better than the average of aligned sites = 3292 Number in coding regions = 3153 Number in noncoding regions = 139 Number of orfs with sites within 600 bp upstream = 134 Fraction of orfs with sites within 600 bp upstream = 0.0215226 Motif number 5 AGCGGGTTTGCGCCCCTCACCCTAATCCTC 1 61 0 CGCCCCTCAC 0.989864 -78 TAAAATTGTGCACTCAACACAGTGATTATT 2 107 0 CACTCAACAC 0.681552 -194 CTCATCGACACGCCCATCCCCAAACAGGCG 4 41 0 CGCCCATCCC 0.993108 -84 CGCCTGGCCGCCGCTACCGTGGGCGAGT 6 21 0 CGCCGCTACC 0.747282 -18 ATGTGCTTGCCACCGATCCCAGGCCTGCCA 7 47 0 CACCGATCCC 0.942107 -239 ATCGGTGGCAAGCACATCACGCCGGATGCG 7 60 1 AGCACATCAC 0.704093 -226 AGCTATCTGTAGCCCATCTCTGCATGGGCT 7 173 1 AGCCCATCTC 0.898841 -113 TACCGCGTGACAGCCATCACGCGGCAGACA 9 13 0 CAGCCATCAC 0.803959 -185 TGAGCGCGCTCAACTCCCTGCCATTA 10 7 1 CGCTCAACTC 0.780184 -134 GCGACCTGGTCGCCGCTCGCTTAACTCTTC 10 67 0 CGCCGCTCGC 0.938926 -74 GGATAATAAGCGCCGATCACCGGGATTGCC 11 109 0 CGCCGATCAC 0.988935 -192 CTTATTTTGACGCTCATCACGAGGCGAGTT 11 167 1 CGCTCATCAC 0.977412 -134 ********** Masking position 10 Map Score: 12.6986 Number of sites scoring better than the average of aligned sites = 1422 Number in coding regions = 1369 Number in noncoding regions = 53 Number of orfs with sites within 600 bp upstream = 57 Fraction of orfs with sites within 600 bp upstream = 0.00915516 Motif number 6 GTGAGGGGCGCAAACCCGCTCCGGGGCCATTAATT 1 71 1 CAACTCCGGG 0.814795 -68 CCATCTGCTATCTCCAGCTGATTAAGTA 2 4 1 TTGCTCCAGC 0.706169 -297 TTTGCCGCATCTCGAAAAATCAAGGAGTTGCAAAA 2 205 1 CCGATCAAGG 0.944105 -96 AAGACGCATTTGCGTCGCATCCGGCGTGATGTGCT 7 70 0 TCGATCCGGC 0.973913 -216 GCGACGCAAATGCGTCTTATCCGGCCTACACGGTG 7 87 1 TCGATCCGGC 0.973913 -199 TGGAGAGCGACTCACCTGCTCCGGCCTACCACATC 7 124 0 CCACTCCGGC 0.9782 -162 GGATAAAAAGCGCGAAGCATCAGAGAATTGACGGA 7 209 0 CCGATCAGAG 0.727554 -77 CCACGACGACCATGACCAATCCAGGAGAGTTAAAG 8 275 1 CTGATCCAGG 0.929742 -26 ATAAATAGTGCCCGTAATATCAGGGAATGACCCCA 9 97 1 CCGATCAGGG 0.971702 -101 ACCATGAAGACGGGAATTATCCAGGCTGTTTTTTT 11 53 0 CGGATCCAGG 0.917326 -248 TTTCGGGATGCTCATTATCTCCGGCAATCCCGGTG 11 87 1 CCACTCCGGC 0.978202 -214 CTGGCAATGGCGCAGAAAAACCAGCTGGGATAATA 11 131 0 CCAAACCAGC 0.740924 -170 * ** ******* Masking position 11 Map Score: 5.47743 Number of sites scoring better than the average of aligned sites = 2172 Number in coding regions = 1556 Number in noncoding regions = 616 Number of orfs with sites within 600 bp upstream = 184 Fraction of orfs with sites within 600 bp upstream = 0.0295535 Motif number 7 AACACAGTGATTATTTAGCGTAAAACCTGA 2 92 0 TTATTTAGCG 0.742228 -209 ATCATCGACATTATTCACCGCAGGGATAAT 5 63 0 TTATTCACCG 0.958428 -149 TGCATGGGCTTTTTTCTCCGTCAATTCTCT 7 193 1 TTTTTCTCCG 0.958428 -93 TGCTTCGCGCTTTTTATCCGTAAAAAGCTA 7 225 1 TTTTTATCCG 0.900118 -61 ATAACCCTTTTTATGCTCCGTGAAAGCGAT 8 49 0 TTATGCTCCG 0.921095 -252 CTAAAAGGCGTTATCATGCGCACCATCGTG 8 167 0 TTATCATGCG 0.786499 -134 TGATCGGCGCTTATTATCCCAGCTGGTTTT 11 120 1 TTATTATCCC 0.713974 -181 TCCCAGCTGGTTTTTCTGCGCCATTGCCAG 11 136 1 TTTTTCTGCG 0.949012 -165 ACGAGGCGAGTTATTCAGCGGGCAAATATC 11 185 1 TTATTCAGCG 0.949012 -116 ********** Masking position 4 Map Score: 4.7754 Number of sites scoring better than the average of aligned sites = 530 Number in coding regions = 469 Number in noncoding regions = 61 Number of orfs with sites within 600 bp upstream = 73 Fraction of orfs with sites within 600 bp upstream = 0.011725 Motif number 8 CGCACTGGCAGTTCCCTCTCCCCTATGGGG 1 30 1 GTTCCCTCTC 0.90608 -109 TGAGGGGCGCAAACCCGCTCCGGGGCCATT 1 72 1 AAACCCGCTC 0.834025 -67 GGAGCAGGTGAGTCGCTCTCCAACGTGAAG 7 137 1 AGTCGCTCTC 0.960051 -149 GTCCCTTTGTGATCGCTTTCACGGAGCATA 8 38 1 GATCGCTTTC 0.813404 -263 CAAATCACGCATACGCGCTCTCGACTACAG 9 159 0 ATACGCGCTC 0.932696 -39 CGGTCTCGCTCCAGTTAATCA 9 187 0 GGTCTCGCTC 0.96766 -11 TGAGCGCGCTCAACTCCCTGC 10 2 1 GAGCGCGCTC 0.498829 -139 GCGGCGACCAGGTCGCGTGCCGCAGACCGT 10 81 1 GGTCGCGTGC 0.824334 -60 TATGCCAACAGTTCTCTCTCGCATGGCGAT 11 16 1 GTTCTCTCTC 0.861821 -285 AATCTATTTGAGACGCGCTC 11 291 1 AGACGCGCTC 0.965228 -10 ********** Masking position 6 Map Score: 6.16194 Number of sites scoring better than the average of aligned sites = 928 Number in coding regions = 873 Number in noncoding regions = 55 Number of orfs with sites within 600 bp upstream = 55 Fraction of orfs with sites within 600 bp upstream = 0.00883392 Motif number 9 CCATTCTGGGGCACCAATCTGGTGCGCTAAA 2 133 0 GCACCAATTG 0.982902 -168 CCCTGAAGATGCACCATTCTGGGGCACCAAT 2 146 0 GCACCATTTG 0.982902 -155 AAGCTATAATGCACTAAAATGGTGCAACCTG 7 249 1 GCACTAAATG 0.940056 -37 AAAGGTCATTGCACCAACATGGTGCTTAATG 8 81 1 GCACCAACTG 0.988879 -220 TTCCATTGAAGCACTATATTGGTGCAACATT 8 113 1 GCACTATATG 0.940056 -188 CAAAAGGGCTGCACCACGATGTGAATGTTGC 8 136 0 GCACCACGTG 0.96592 -165 GTTATCATGCGCACCATCGTGCAAAAGGGCT 8 157 0 GCACCATCTG 0.988879 -144 ******** ** Masking position 6 Map Score: 8.27662 Number of sites scoring better than the average of aligned sites = 180 Number in coding regions = 166 Number in noncoding regions = 14 Number of orfs with sites within 600 bp upstream = 15 Fraction of orfs with sites within 600 bp upstream = 0.00240925 Motif number 10 TGTTGTTCCTGTTACCGTGGTGTAAATAAT 1 118 0 GTTACCGTGG 0.961109 -21 ACGATTGTGTGATGATGTGGATACAAAAAA 2 41 0 GATGATGTGG 0.93963 -260 ATCCTGGCATGTTGCTGTTGATTCTTCAAT 3 109 0 GTTGCTGTTG 0.877047 -43 GAATAATGTCGATGATGTCGAAATGACACG 5 77 1 GATGATGTCG 0.720362 -135 GATGAATTTCGTCGCCGTGTCGACGTGTCA 5 100 0 GTCGCCGTGT 0.857428 -112 CCTGGCCGCCGCTACCGTGGGCGAGTTGGA 6 17 0 GCTACCGTGG 0.900361 -22 GTGTTTTAGTTGCCGTGGAAACTTTTCG 7 9 1 GTTGCCGTGG 0.992095 -277 CCTACACGGTGATGATGTGGTAGGCCGGAG 7 111 1 GATGATGTGG 0.93963 -175 ATTGGTCATGGTCGTCGTGGTAACGAAATC 8 265 0 GTCGTCGTGG 0.904674 -36 ********** Masking position 8 Map Score: 6.03277 Number of sites scoring better than the average of aligned sites = 1111 Number in coding regions = 1078 Number in noncoding regions = 33 Number of orfs with sites within 600 bp upstream = 39 Fraction of orfs with sites within 600 bp upstream = 0.00626405 Motif number 11 CCAATCTGGTGCGCTAAAATTGTGCACTCA 2 121 0 GCGCTAAAAT 0.493433 -180 CCAGATTGGTGCCCCAGAATGGTGCATCTT 2 142 1 GCCCCAGAAT 0.840368 -159 TCAGGGTATTGCCCTATAAATCGTGCATCA 2 171 1 GCCCTATAAA 0.8219 -130 TTTTCGAGATGCGGCAAAAACGTGATGCAC 2 193 0 GCGGCAAAAA 0.960346 -108 GACACGCCCATCCCCAAACAGGCGTAACGC 4 35 0 TCCCCAAACA 0.708981 -90 TGTTTTAGTTGCCGTGGAAACTTTTCGCCT 7 12 1 GCCGTGGAAA 0.771758 -274 GCGCTTTTTATCCGTAAAAAGCTATAATGC 7 231 1 TCCGTAAAAA 0.769062 -55 ACATCCTCCGCAAACAAGTATTGCAG 8 7 1 TCCGCAAACA 0.827086 -294 CTTTTAAATTGCCCCTAAAAGGCGTTATCA 8 181 0 GCCCCTAAAA 0.704456 -120 TGGCCGTGTCGCCGTAAAAAAGATAAAGCG 8 224 0 GCCGTAAAAA 0.952404 -77 CAGCCATCACGCGGCAGACATT 9 3 0 GCGGCAGACA 0.944312 -195 CACATAAAATGTGGCATAAAAGATGCATAC 9 130 1 GTGGCATAAA 0.400309 -68 CAGGTCGCGTGCCGCAGACCGTGCAACTCT 10 89 1 GCCGCAGACC 0.840031 -52 GGCTGGCAATGGCGCAGAAAAACCAGCTGG 11 138 0 GGCGCAGAAA 0.832479 -163 AGCAAAAAGGGCGGTATAAATAATTCCGAC 11 227 0 GCGGTATAAA 0.8219 -74 ********** Masking position 8 Map Score: 5.6863 Number of sites scoring better than the average of aligned sites = 3559 Number in coding regions = 3285 Number in noncoding regions = 274 Number of orfs with sites within 600 bp upstream = 295 Fraction of orfs with sites within 600 bp upstream = 0.0473819 Motif number 12 GTGTCGATGAGTGTCGAAAATGACATTTCA 4 60 1 GTGTCGAAAA 0.913472 -65 ATTGTCATTTTTGACGAAAACATGCCGATG 4 88 0 TTGACGAAAA 0.78867 -37 CGTCGACACGGCGACGAAATTCATCTTTAG 5 105 1 GCGACGAAAT 0.950463 -107 AGTTTCCACGGCAACTAAAACAC 7 4 0 GCAACTAAAA 0.828586 -282 CACGCCGGATGCGACGCAAATGCGTCTTAT 7 77 1 GCGACGCAAA 0.977391 -209 GGTCGTCGTGGTAACGAAATCTGCAATTAT 8 256 0 GTAACGAAAT 0.772456 -45 CAGTTTTGACGTGACGAAACGAAATACCGC 9 37 0 GTGACGAAAC 0.909926 -161 ATTCAAAACTCTGACGAAAAACAGGCTGTC 9 69 0 CTGACGAAAA 0.846909 -129 GCATGGCGATGCAACTCAAAAAAACAGCCT 11 36 1 GCAACTCAAA 0.77486 -265 GAGCGCGTCTCAAATAGATTAGAA 11 287 0 GCGTCTCAAA 0.772247 -14 ********** Masking position 8 Map Score: 4.3493 Number of sites scoring better than the average of aligned sites = 1012 Number in coding regions = 915 Number in noncoding regions = 97 Number of orfs with sites within 600 bp upstream = 103 Fraction of orfs with sites within 600 bp upstream = 0.0165435 Motif number 13 AGGGTGAGGGGCGCAAACCCGCTCCGGGGC 1 68 1 GCGCAAACCC 0.9166 -71 ACGATTTATAGGGCAATACCCTGAAGATGC 2 165 0 GGGCAATACC 0.958789 -136 TCTATCCACGGGACGATCCCCTGCGTGACA 2 267 0 GGACGATCCC 0.929339 -34 CAGTTCAGCAGGACAATCCTGAACGCAGAA 3 28 0 GGACAATCCT 0.918872 -124 CCTGCAAAACGGGCAAAGCCTCAGC 4 6 0 GGGCAAAGCC 0.927308 -119 CAGGCATTCCTCAGGTGATTG 4 114 0 AGGCATTCCT 0.662025 -11 TTTTATGTGGGGTCATTCCCTGATATTACG 9 109 0 GGTCATTCCC 0.90259 -89 TCATTATCTCCGGCAATCCCGGTGATCGGC 11 98 1 CGGCAATCCC 0.972051 -203 ********** Masking position 4 Map Score: 1.71076 Number of sites scoring better than the average of aligned sites = 483 Number in coding regions = 441 Number in noncoding regions = 42 Number of orfs with sites within 600 bp upstream = 44 Fraction of orfs with sites within 600 bp upstream = 0.00706714 Motif number 14 ********** No masking Map Score: -1.22681e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: -1.22681e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0