AlignACE version 2.2 July 7, 1998 alignACE -a/home/amcguire/alignace/lib/ORF_hinf.txt -z/skink1/amcguire/genomes/hinf.fna -ifnr_hinf_opreg_300.orf -g0.38 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 HI0007 300 formate dehydrogenase, beta subunit (fdxH) #2 HI0179 130 pyruvate formate-lyase activating enzyme (act) #3 HI0180 27 formate acetyltransferase (pfl) #4 HI0181 300 formate transporter #5 HI0745 225 L-asparaginase II (ansB) #6 HI0746 155 anaerobic C4-dicarboxylate membrane transporter protein (dcuB) #7 HI0747 203 NADH dehydrogenase (ndh) #8 HI0936 108 cytochrome C-type biogenesis #9 HI0937 200 extragenic suppressor (suhB) #10 HI1068 43 nitrite reductase, cytochrome C-type protein (nrfB) #11 HI1069 161 nitrite reductase, cytochrome C552 (nrfA) #12 HI1074 264 conserved hypothetical protein #13 HI1076 300 cytochrome D ubiquinol oxidase, subunit I (cydA) Motif number 1 TGTTCCCGCCAAAGTGCGGTCAAAAATAAA 2 18 0 AAAGTGCGGT 0.998264 -113 AAAGATAACCCAAGTGCGGTTATACTTGAG 5 46 0 CAAGTGCGGT 0.995974 -180 AACCTTTATGCAAGTACGGAATTTAAGCAT 5 86 0 CAAGTACGGA 0.828842 -140 GGTAATAAACAAAGTGCGGTTATAAATAAC 6 18 1 AAAGTGCGGT 0.998264 -138 ATTGTGGTCAAAAGTGCGGTTATTTATAAC 6 36 0 AAAGTGCGGT 0.998264 -120 ATTCGATAACAAAGAACGGTGCTGAAATAG 7 17 1 AAAGAACGGT 0.918446 -187 CTTATATATCAAAGTGCGGTTATTTTTTTG 7 85 0 AAAGTGCGGT 0.998264 -119 CTTTGATATATAAGTGCGGTTATTTTTATG 7 101 1 TAAGTGCGGT 0.989094 -103 ATTTATGGTTAAAGTGCGGTGGAAAATTGG 9 19 0 AAAGTGCGGT 0.998264 -182 TTTGCACTAAAAAGTGCGGTGCATTTTTCA 10 12 0 AAAGTGCGGT 0.998264 -32 AAAGTGCGGTTAAAAAAATG 12 255 0 AAAGTGCGGT 0.998264 -10 ********** Masking position 3 Map Score: 41.7433 Number of sites scoring better than the average of aligned sites = 1241 Number in coding regions = 815 Number in noncoding regions = 426 Number of orfs with sites within 600 bp upstream = 289 Fraction of orfs with sites within 600 bp upstream = 0.0464182 Motif number 2 ATGTTTATTTTTGACCGCACTTTGGCGGGA 2 15 1 TTGACCGCAC 0.988239 -116 GGGCTCAAGTATAACCGCACTTGGGTTATC 5 43 1 ATAACCGCAC 0.997037 -183 GCGGTTATTTATAACCGCACTTTGTTTATT 6 21 0 ATAACCGCAC 0.997037 -135 GCGGTTATAAATAACCGCACTTTTGACCAC 6 33 1 ATAACCGCAC 0.997037 -123 ACTCAAAAAAATAACCGCACTTTGATATAT 7 82 1 ATAACCGCAC 0.997037 -122 TTTCATAAAAATAACCGCACTTATATATCA 7 104 0 ATAACCGCAC 0.997037 -100 GCTCCAATTTTCCACCGCACTTTAACCATA 9 16 1 TCCACCGCAC 0.976232 -185 ATGAAAAATGCACCGCACTTTTTAGTGC 10 9 1 TGCACCGCAC 0.976232 -35 TTCCATTTTTTTAACCGCACTTT 12 252 1 TTAACCGCAC 0.996352 -13 ********** Masking position 4 Map Score: 27.0238 Number of sites scoring better than the average of aligned sites = 243 Number in coding regions = 125 Number in noncoding regions = 118 Number of orfs with sites within 600 bp upstream = 97 Fraction of orfs with sites within 600 bp upstream = 0.0155798 Motif number 3 ACATTCTTGGTAAATATTGAAAAAGTTGGGGAGGCA 1 271 1 TAATAAAAAT 0.91713 -30 TTATAGACTAAATCTTTGGTAAAATTTAGCTATATC 2 85 1 AATTTAAAAT 0.806582 -46 ACATAAATTTCCTAAAATTAGATATAGCT 2 112 0 TAATTAAAAT 0.9093 -19 AGGTTTGTTTAATTAAAGACAAAATTCCCATATTAA 4 114 0 AATAAAAAAT 0.871065 -187 CTTTCATTGCAAAGAAAAGCAAAAATTATTTCAACA 4 167 0 AAAAAAAAAT 0.930585 -134 TGACATTGAAAAAGTTGATGAAAATTTAATACTTTT 4 258 0 AAATTAAAAT 0.940081 -43 CTCTACTGATTAAGTACGTCAAAATAGGGCTCAAGT 5 17 1 TAATAAAAAA 0.78275 -209 GCACTTGGGTTATCTTTCAAAAAAATTATGCTTAAA 5 59 1 TATTTAAAAT 0.837017 -167 AAGGTTATACAATCAACAAAAAAAATTATGTGATCG 5 110 1 AATAAAAAAT 0.872583 -116 AGTTATTTATAAACAATGGAAAAACAAATTTATGAT 5 148 0 AAAAAAAAAA 0.813592 -78 AGATTTCTCCTAAGATGAATAAAAATTTCTCCAAAG 5 200 0 TAAATAAAAT 0.884124 -26 ATATCAACTTAAAATAACTCAAAAAAATAACCGCAC 7 66 1 AAATAAAAAA 0.852311 -138 ACAGGGCGGAAAACTTTCATAAAAATAACCGCACTT 7 112 0 AAATTAAAAT 0.941697 -92 TATGTTTCATTAATAAAATTAAAAATAGCACCTTGA 8 35 0 TAAAAAAAAT 0.893276 -74 ACCAGCTTTTAAAGAACAGAAAAATTCCGTGCCATT 9 169 0 AAAAAAAAAT 0.930585 -32 TGATAATAATACTCAAAATTAAGGCGGTTT 11 5 1 AATATAAAAT 0.860431 -157 TATACCGCCTTAATTTATTTAAAACAACAATATACC 11 41 1 TAATTAAAAA 0.766329 -121 CTTATCTTTTAAAATACTCAAAAAGAGGTATATTGT 11 67 0 AAATAAAAAA 0.852311 -95 TCTATGCTAGAATATTTACCAAAATTTCCATTTTTT 12 227 1 AATTTAAAAT 0.806582 -38 CCTATTTTTGTATTTATATCAAAAATGTGATCTATA 13 55 1 TATTAAAAAT 0.849219 -246 CATAAGGATAAAAAATAGTAAAAAATGCTATATAGA 13 85 0 AAAATAAAAT 0.924361 -216 *** ** **** * Masking position 11 Map Score: 22.8134 Number of sites scoring better than the average of aligned sites = 887 Number in coding regions = 612 Number in noncoding regions = 275 Number of orfs with sites within 600 bp upstream = 215 Fraction of orfs with sites within 600 bp upstream = 0.0345326 Motif number 4 GTGCGGTCAAAAATAAACATGTTT 2 1 0 AAAAAAGTTT 0.53923 -130 GTCTATAAAAAATGAGCCTGATTTAAATCAGGCT 2 59 0 AATACTATTT 0.661865 -72 TCCCCCAGATAATCATCCACTTTTC 4 2 0 AATACATTTT 0.709713 -299 GTATTACGCGAATAAAACAAGTTTCAAATTAAGT 4 43 1 AATAAAGTTT 0.721232 -258 AAACCTTGCAAAATATCAAAGTTTGTTGAAATAA 4 144 1 AAAACAGTTT 0.941572 -157 GAGGAGAGTAAAATAGCACCAATTATAGAAGTAT 4 205 1 AAAACCAATT 0.606342 -96 CATTGTTTATAAATAACTTAATTTAGTTAGACTA 5 166 1 AAAACTATTT 0.640667 -60 TGCGGTTATAAATAACCGCACTTTTGACCACAAT 6 32 1 AATACCCTTT 0.87414 -124 CTAGGTTAATAAAAAACACTGTGTTTTATTTGTT 6 123 0 AAAACCGTGT 0.738082 -33 AACGGTGCTGAAATAGCACCGTTTTTGTTGTTCT 7 31 1 AAAACCGTTT 0.964772 -173 AACTCAAAAAAATAACCGCACTTTGATATATAAG 7 81 1 AATACCCTTT 0.87414 -123 TAAAGTCGCTAATCAAGTATGTTTCATTAATAAA 8 54 0 AATAGAGTTT 0.791304 -55 GAAAACCTATAAAAACCACTGTTTTATGATTTTC 9 107 1 AAAACCGTTT 0.966215 -94 TAATACTCAAAATTAAGGCGGTTTTATACCGCCT 11 17 1 AATAGCGTTT 0.902416 -145 TAAGATACCAAAAGAAAAAAGTTTTTCTACTCGC 11 131 0 AAAAAAGTTT 0.702343 -31 AATAAAGAAAAAAAAGGTAAATTTGAGGAATAAA 12 87 1 AAAAGAATTT 0.676236 -178 AAGGGTTCATAATGAACCCTTTTTAACTTTTCTC 12 149 1 AATACCTTTT 0.794211 -116 GTGCGGTTAAAAAAATGGAAATTTTGGTAAATAT 12 238 0 AAAAGAATTT 0.660898 -27 AAATATAACAAATAAGCCCTATTTTTGTATTTAT 13 38 1 AATACCATTT 0.830265 -263 ACTCAACTCCAATCAGCTAAGTTTAAATTGACTT 13 203 0 AATACAGTTT 0.940836 -98 CGATGCCTTAAATAATCCCTAATTACTCAACTCC 13 227 0 AATACCAATT 0.584319 -74 *** * * * **** Masking position 14 Map Score: 19.3948 Number of sites scoring better than the average of aligned sites = 626 Number in coding regions = 457 Number in noncoding regions = 169 Number of orfs with sites within 600 bp upstream = 137 Fraction of orfs with sites within 600 bp upstream = 0.0220045 Motif number 5 CGACCGCTTTAATATAGCCACGACGAGAAGT 1 64 0 AAATAGCCAC 0.918698 -237 GGAGGAGAGTAAAATAGCACCAATTATAGAA 4 204 1 AAATAGCACC 0.981425 -97 ATTTTTTTGAAAGATAACCCAAGTGCGGTTA 5 54 0 AAATAACCCA 0.798299 -172 AACGGCGTGTAATATAGCAACAAATAGGTAG 6 90 0 AAATAGCAAC 0.944572 -66 CGTTTCAACAAATAAAACACAGTGTTTTTTA 6 117 1 AAAAAACACA 0.635948 -39 GAACGGTGCTGAAATAGCACCGTTTTTGTTG 7 30 1 GAATAGCACC 0.885153 -174 ATAACTCAAAAAAATAACCGCACTTTGATAT 7 79 1 AAATAACCGC 0.853748 -125 AACTTTCATAAAAATAACCGCACTTATATAT 7 106 0 AAATAACCGC 0.853748 -98 ATGTAATGATAACATAACAACGAAACAGGGC 7 141 0 AAATAACAAC 0.913935 -63 TTTTATAAGCACAATAGCACCTATCAAGGTG 8 12 1 ACATAGCACC 0.885153 -97 AATAAAATTAAAAATAGCACCTTGATAGGTG 8 29 0 AAATAGCACC 0.981425 -80 ATGAAAAATGCACCGCACTTTTTA 10 4 1 AAAATGCACC 0.603471 -40 AATTAAATAAAATATAACAAATAAGCCCTAT 13 29 1 AAATAACAAA 0.658144 -272 TTTAAAGGTTAAAAAAACACCAGTTATTATA 13 157 0 AAAAAACACC 0.905974 -144 ** ******** Masking position 4 Map Score: 14.6804 Number of sites scoring better than the average of aligned sites = 255 Number in coding regions = 190 Number in noncoding regions = 65 Number of orfs with sites within 600 bp upstream = 48 Fraction of orfs with sites within 600 bp upstream = 0.0077096 Motif number 6 GACGAGAAGTAATTTTTACCATATCGCCTTTTTGGATGCCT 1 33 0 AATTATTCCT 0.923514 -268 ATGCCTCCCCAACTTTTTCAATATTTACCAAGAATGTTTTG 1 267 0 AATTATTTAA 0.603976 -34 ATCTTTGGTAAAATTTAGCTATATCTAATTTTAGGAAATTT 2 96 1 AATTATTCAT 0.966014 -35 AATTAAACAAACCTTGCAAAATATCAAAGTTTGTTGAAATA 4 136 1 ACTTATTCAT 0.809707 -165 AATTTTCATCAACTTTTTCAATGTCAATAGTTGGAGTTTGA 4 268 1 AATTATTCAT 0.966159 -33 TAGTCTAACTAAATTAAGTTATTTATAAACAATGGAAAAAC 5 159 0 AATTATTAAA 0.833824 -67 TTATTGATCCAAGTTATGGAATCTCTACCTATTTGTTGCTA 6 66 1 AATTATTCAA 0.950873 -90 TTCTAATATCAACTTAAAATAACTCAAAAAAATAACCGCAC 7 61 1 AATTAATCAA 0.77058 -143 TTAATGTAACATTTTTAACAATTTAAACTTTTAGGAGAGCT 7 171 1 ATTTATTAAT 0.580923 -33 TCAACTAGTTATTTTGGCAAATCTCGCTATAATGGCACGGA 9 139 1 ATTTATTCCA 0.605631 -62 AACCCTTTTTAACTTTTCTCATTTATCTTTTTCTCAACAAC 12 163 1 AATTATTACT 0.757878 -102 AATGGAAAATAATTTTACGAATTTCTATGCTAGAATATTTA 12 204 1 AATTATTCAT 0.966168 -61 GTCAATTTGATCTAAGTCAATTAAATAAAATATA 13 4 1 AATTAATCAA 0.770603 -297 AATAGCCGCCAATTTGGATTATCTCTATAATAACTGGTGTT 13 132 1 AATTATTCAT 0.9658 -169 AGCTAAGTTTAAATTGACTTATCTACATAATTATTTTTAAA 13 182 0 AATTATTAAT 0.880999 -119 ** ** ** ** * * Masking position 11 Map Score: 11.6324 Number of sites scoring better than the average of aligned sites = 156 Number in coding regions = 124 Number in noncoding regions = 32 Number of orfs with sites within 600 bp upstream = 35 Fraction of orfs with sites within 600 bp upstream = 0.00562159 Motif number 7 AAAGGCATCCAAAAAGGCGATATGGTAAAAAT 1 31 1 AAAAGGCGTA 0.981637 -270 TCACTGGAATATGAAGGCATTAAATGGCAAAG 1 165 1 ATAAGGCATA 0.847327 -136 GCCTCACCCCAAGATGGTGTTAAGGTATTCGT 1 214 0 AAATGGTGTA 0.798175 -87 ATTGACATTGAAAAAGTTGATGAAAATTTAAT 4 264 0 AAAAGTTGTG 0.650574 -37 CCGTACTTGCATAAAGGTTATACAATCAACAA 5 97 1 ATAAGGTTTA 0.744767 -129 TAGAACAACAAAAACGGTGCTATTTCAGCACC 7 34 0 AAACGGTGTA 0.854259 -170 AATAGCACCTATCAAGGTGCTATTTTTAATTT 8 24 1 ATAAGGTGTA 0.97093 -85 TGATGCGCAGATAAAGTCGCTAATCAAGTATG 8 67 0 ATAAGTCGTA 0.907292 -42 AATACTCAAAATTAAGGCGGTTTTATACCGCC 11 18 1 ATAAGGCGTT 0.909207 -144 TTTTAAATAAATTAAGGCGGTATAAAACCGCC 11 33 0 ATAAGGCGTA 0.984502 -129 AACAATGATTAACAAGGCGATGCCTTAAATAA 13 246 0 AAAAGGCGTG 0.958308 -55 ** ****** ** Masking position 4 Map Score: 7.50939 Number of sites scoring better than the average of aligned sites = 206 Number in coding regions = 172 Number in noncoding regions = 34 Number of orfs with sites within 600 bp upstream = 26 Fraction of orfs with sites within 600 bp upstream = 0.00417604 Motif number 8 GCCTGATTTAAATCAGGCTCATACATATTAT 2 47 0 AATAGGCTCA 0.973617 -84 GCCTGATTTAAATCAGGCTCATTTTTTATAG 2 60 1 AATAGGCTCA 0.973617 -71 AGTACGTCAAAATAGGGCTCAAGTATAACCG 5 29 1 AATGGGCTCA 0.989519 -197 CTTTCAAAAAAATTATGCTTAAATTCCGTAC 5 72 1 AATATGCTTA 0.658769 -154 TGGATCAATAAATTGTGGTCAAAAGTGCGGT 6 46 0 AATGTGGTCA 0.831963 -110 CCAACTAAATAAAAGGGTTCATAATGAACCC 12 137 1 AAAGGGTTCA 0.904105 -128 AGAAAAGTTAAAAAGGGTTCATTATGAACCC 12 151 0 AAAGGGTTCA 0.904105 -114 TAAATACAAAAATAGGGCTTATTTGTTATAT 13 40 0 AATGGGCTTA 0.955739 -261 *** ******* Masking position 2 Map Score: 5.57673 Number of sites scoring better than the average of aligned sites = 75 Number in coding regions = 60 Number in noncoding regions = 15 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555 Motif number 9 CATAATATGTATGAGCCTGATTTAAATCAG 2 46 1 ATGAGCCTGA 0.978407 -85 TCTATAAAAAATGAGCCTGATTTAAATCAG 2 62 0 ATGAGCCTGA 0.978407 -69 GCGGTTATACTTGAGCCCTATTTTGACGTA 5 31 0 TTGAGCCCTA 0.910934 -195 AAACAAATTTATGATCTCGATCACATAATT 5 133 0 ATGATCTCGA 0.86536 -93 ATTTTAAAAGATAAGCTTGATCAAGCTCAA 11 88 1 ATAAGCTTGA 0.873714 -74 ATGCTAAAGTTTGAGCTTGATCAAGCTTAT 11 98 0 TTGAGCTTGA 0.861717 -64 AATATAACAAATAAGCCCTATTTTTGTATT 13 39 1 ATAAGCCCTA 0.916552 -262 GATGCCTTAAATAATCCCTAATTACTCAAC 13 230 0 ATAATCCCTA 0.715307 -71 ********** Masking position 4 Map Score: 3.89124 Number of sites scoring better than the average of aligned sites = 80 Number in coding regions = 62 Number in noncoding regions = 18 Number of orfs with sites within 600 bp upstream = 7 Fraction of orfs with sites within 600 bp upstream = 0.00112432 Motif number 10 AAAGATTTAGTCTATAAAAAATGAGCCTGAT 2 71 0 TCTATAAAAA 0.92104 -60 CCTTTGTTAATTAATAAATAAATCT 3 5 0 TTAATAAAAA 0.927266 -23 GGTTATACAATCAACAAAAAAAATTATGTGA 5 112 1 TCAACAAAAA 0.856334 -114 TTTTCCATTGTTTATAAATAACTTAATTTAG 5 161 1 TTTATAAAAA 0.914778 -65 GATCAATGGTAATAAACAAAGTGCGGTTA 6 9 1 GTAATAAAAA 0.830816 -147 ACAAAGTGCGGTTATAAATAACCGCACTTTT 6 26 1 GTTATAAAAA 0.805157 -130 ACACGCCGTTTCAACAAATAAAACACAGTGT 6 111 1 TCAACAAAAA 0.856334 -45 CCCCCCTAGGTTAATAAAAAACACTGTGTTT 6 131 0 TTAATAAAAA 0.927305 -25 AAATGCACCATCAATAAAGAAAAAAAAGGTA 12 75 1 TCAATAAAAA 0.932716 -190 TTTTTTAACCTTTAAAAATAATTATGTAGAT 13 172 1 TTTAAAAAAA 0.629266 -129 TCAACTCCTTTGTATAAACAACATTAGTTCC 13 278 0 TGTATAAAAA 0.768148 -23 ******** ** Masking position 6 Map Score: 7.86198 Number of sites scoring better than the average of aligned sites = 163 Number in coding regions = 86 Number in noncoding regions = 77 Number of orfs with sites within 600 bp upstream = 68 Fraction of orfs with sites within 600 bp upstream = 0.0109219 Motif number 11 CGATATGGTAAAAATTACTTCTCGTCGTGG 1 48 1 AAAATTACTT 0.845937 -253 TAATTTTAGGAAATTTATGT 2 121 1 AAATTTATGT 0.816281 -10 AAGAAAAGCAAAAATTATTTCAACAAACTT 4 162 0 AAAATTATTT 0.906421 -139 ATCTTTCAAAAAAATTATGCTTAAATTCCG 5 70 1 AAAATTATGC 0.868228 -156 ATCAACAAAAAAAATTATGTGATCGAGATC 5 121 1 AAAATTATGT 0.961247 -105 AAAGAACAGAAAAATTCCGTGCCATTATAG 9 165 0 AAAATTCCGT 0.788632 -36 AGAAATTCGTAAAATTATTTTCCATTGTTG 12 200 0 AAAATTATTT 0.906421 -65 ACCTTTAAAAATAATTATGTAGATAAGTCA 13 179 1 ATAATTATGT 0.816364 -122 ********** Masking position 3 Map Score: 3.20071 Number of sites scoring better than the average of aligned sites = 165 Number in coding regions = 136 Number in noncoding regions = 29 Number of orfs with sites within 600 bp upstream = 28 Fraction of orfs with sites within 600 bp upstream = 0.00449727 Motif number 12 TTCCTTTGTTAATTAATAAA 3 18 0 TTCCTTTGTT 0.842078 -10 AATTTAAGCATAATTTTTTTGAAAGATAAC 5 67 0 TAATTTTTTT 0.609603 -159 CTCGATCACATAATTTTTTTTGTTGATTGT 5 118 0 TAATTTTTTT 0.609603 -108 AAATTTGTTTTTCCATTGTTTATAAATAAC 5 153 1 TTCCATTGTT 0.887227 -73 CTTTGTTTATTACCATTGATC 6 2 0 TACCATTGAT 0.52988 -154 CAAAGTGCGGTTATTTTTTTGAGTTATTTT 7 76 0 TTATTTTTTT 0.499444 -128 TACATTAATGTAACATTTTTAACAATTTAA 7 167 1 TAACATTTTT 0.878249 -37 CCTATCAAGGTGCTATTTTTAATTTTATTA 8 31 1 TGCTATTTTT 0.603175 -78 AACAACAATATACCTCTTTTTGAGTATTTT 11 63 1 TACCTCTTTT 0.65195 -99 TCCTCAAATTTACCTTTTTTTTCTTTATTG 12 86 0 TACCTTTTTT 0.932458 -179 TAAAATTATTTTCCATTGTTGTTGAGAAAA 12 191 0 TTCCATTGTT 0.887227 -74 TTACCAAAATTTCCATTTTTTTAACCGCAC 12 242 1 TTCCATTTTT 0.928652 -23 GCTATATAGATCACATTTTTGATATAAATA 13 65 0 TCACATTTTT 0.627616 -236 GTGATCTATATAGCATTTTTTACTATTTTT 13 81 1 TAGCATTTTT 0.725094 -220 TAGCATTTTTTACTATTTTTTATCCTTATG 13 91 1 TACTATTTTT 0.866766 -210 ********** Masking position 7 Map Score: 5.75851 Number of sites scoring better than the average of aligned sites = 510 Number in coding regions = 422 Number in noncoding regions = 88 Number of orfs with sites within 600 bp upstream = 78 Fraction of orfs with sites within 600 bp upstream = 0.0125281 Motif number 13 ********** No masking Map Score: -5.56822e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: -5.56822e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: -5.56822e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0