AlignACE version 2.2 July 7, 1998 alignACE -a/home/amcguire/genomes/ORF_hpyl.txt -z/home/amcguire/genomes/hpyl.fna -idnaA_hpyl_opreg_300.orf -g0.389 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.389 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 HP0364 205 ribonucleoside diphosphate reductase, beta subunit (nrdB) #2 HP0497 228 sodium- and chloride-dependent transporter #3 HP0500 57 DNA polymerase III beta-subunit (dnaN) #4 HP0680 171 ribonucleoside-diphosphate reductase 1 alpha subunit (nrdA) #5 HP0681 39 H. pylori predicted coding region HP0681 #6 HP0682 153 H. pylori predicted coding region HP0682 #7 HP0683 300 UDP-N-acetylglucosamine pyrophosphorylase (glmU) #8 HP1079 110 H. pylori predicted coding region HP1079 #9 HP1082 91 multidrug resistance protein (msbA) #10 HP1083 254 H. pylori predicted coding region HP1083 #11 HP1084 66 aspartate transcarbamoylase (pyrB) #12 HP1529 152 chromosomal replication initiator protein (dnaA) Motif number 1 ATAAAGAAGCAGTATTTTAGCTTTTTAATC 1 52 1 AGTATTTTAG 0.52991 -154 CAATTTTTCAGTATTTTTAAAGGATTAAAA 1 74 0 GTATTTTTAA 0.89189 -132 GAAAAATTGAAGTTTTTTAAAATTTGGAGT 1 95 1 AGTTTTTTAA 0.886968 -111 GGGGTTTTAAATTCTTTTAAGGTATTCTAA 1 141 1 ATTCTTTTAA 0.92117 -65 AAATAATGAAATTTTCTTAAAATTATACAA 2 26 1 ATTTTCTTAA 0.768811 -203 TATTTTTTAGGTATTTTTAAAGTGGGTTTT 2 97 1 GTATTTTTAA 0.89189 -132 TAAAGTGGGTTTTTTCTTAAATCTTAAGAT 2 114 1 TTTTTCTTAA 0.831256 -115 ACATCGCTCTTTAATTTTAATCATTGACAA 2 191 1 TTAATTTTAA 0.790236 -38 AAAAGCGTTCTTTTAYGCTATAATTA 3 7 1 GTTCTTTTAY 0.949471 -51 ATTCAAGGGGATTATTTTAACT 3 46 1 ATTATTTTAA 0.879251 -12 TAAGTTTTAAAGTTTTTTAATTTTTTTATA 4 41 0 AGTTTTTTAA 0.886968 -131 AGTTGGATTTGTTCTATTAATGAGAATAAG 4 67 0 GTTCTATTAA 0.735997 -105 TGAACTTTTCTTTTTCTTAAGTTTTTTATT 4 97 1 TTTTTCTTAA 0.831256 -75 TTAAATCGTTTGTTTTTTAAATTTGGAATT 4 132 0 TGTTTTTTAA 0.920787 -40 GCGTTTTTTCATTTTTTTAATCCTCATTTG 7 192 0 ATTTTTTTAA 0.934446 -109 CTCATTTTAGGGAATTTTAACATGCCTTAT 7 268 0 GGAATTTTAA 0.698792 -33 TTGTTCTCAAGTTCTTTTAAAATTTTGTCG 8 30 1 GTTCTTTTAA 0.949471 -81 CGCTTTAAGCTGTTTATTAAAGCGTTAAAA 9 16 1 TGTTTATTAA 0.632975 -76 TTTTATTAAGGGATTTTTAACGCTTTAATA 9 30 0 GGATTTTTAA 0.819545 -62 TATTATAGTGTTTTTATTAAGGGATTTTTA 9 41 0 TTTTTATTAA 0.757983 -51 GCTTTTTGGCGTTTTTTTAAAAAATGGGTT 10 29 1 GTTTTTTTAA 0.958197 -226 TATAACGAAATTTTTTTTAGTTTCATCATA 10 120 0 TTTTTTTTAG 0.855868 -135 AATTAACCCAATTATTTTAGATTATAACGA 10 142 0 ATTATTTTAG 0.671884 -113 AGCTATTTATTTACTTTTAATTAACCCAAT 10 160 0 TTACTTTTAA 0.861635 -95 TTTTTTCCTTTTAATAGCCAATAC 10 241 0 TTCCTTTTAA 0.623327 -14 TAATATAGATTTTATTTTAGCTAAAAATGG 11 29 0 TTTATTTTAG 0.752067 -38 AATTAAGGTGTTTCTTTTAAGGGTTTGTCT 12 59 0 TTTCTTTTAA 0.945386 -94 AAGAAACACCTTAATTTTAAGGCTTCATTC 12 73 1 TTAATTTTAA 0.790236 -80 ********** Masking position 5 Map Score: 33.5747 Number of sites scoring better than the average of aligned sites = 1489 Number in coding regions = 1190 Number in noncoding regions = 299 Number of orfs with sites within 600 bp upstream = 219 Fraction of orfs with sites within 600 bp upstream = 0.0351751 Motif number 2 TAAAGGATTAAAAAGCTAAAATACTGCTTCT 1 56 0 AAAACTAAAA 0.673197 -150 CCAAATTTTAAAAAACTTCAATTTTTCAGTA 1 91 0 AAAACTTCAA 0.608891 -115 AAGCCAGAAAAAACTCCAAATTTTAAAAAAC 1 106 0 AAACCCAAAT 0.736197 -100 AAGAATTTAAAACCCCCTAAAAGCCAGAAAA 1 126 0 AACCCCTAAA 0.748408 -80 GTCTTGTTAGAATACCTTAAAAGAATTTAAA 1 146 0 AATACTTAAA 0.729834 -60 TTTGTTCCTTAATTTCCTTAAAACTATCTCA 1 185 0 AATTCCTTAA 0.606448 -21 CCCACTTTAAAAATACCTAAAAAATACAGAG 2 92 0 AAATCCTAAA 0.760514 -137 ATTAGTTTTTAAAATCTTTAAAGATCTTAAG 2 136 0 AAAACTTTAA 0.924677 -93 CTTAACTACCAAACTCCTTGTCAATGATTAA 2 207 0 AAACCCTTGT 0.709681 -22 AGTTAAAATAATCCCCTTGAATTTTTGGTC 3 38 0 AATCCCTTGA 0.678465 -20 AAAAAAATTAAAAAACTTTAAAACTTATTCT 4 44 1 AAAACTTTAA 0.924677 -128 TTGTATCAATAAAAAACTTAAGAAAAAGAAA 4 103 0 AAAAACTTAA 0.668855 -69 TTTAAAAAACAAACGATTTAATTCAAATTTA 4 141 1 AAACATTTAA 0.671429 -31 TGAATAATGAAAAATCCTAAAATATTAATCA 6 17 1 AAAACCTAAA 0.93957 -137 GTGTAAAAACAAAACACTTATTGAGTTTTTT 6 69 1 AAAAACTTAT 0.433308 -85 TAAAATCCTTAAACTCATTTTA 7 289 0 AAAACCTTAA 0.958486 -12 TAAATCCCCTTATCCAAGCAGAA 8 98 0 AATCCCTTAT 0.84459 -13 CCAATCGCTTTAAGCTGTTTATT 9 3 1 AATCCTTTAA 0.884166 -89 AAGGGATTTTTAACGCTTTAATAAACAGCTT 9 22 0 TAACCTTTAA 0.54731 -70 AAGCGTTAAAAATCCCTTAATAAAAACACTA 9 35 1 AATCCTTAAT 0.660544 -57 CCCTTAATAAAAACACTATAATACAAGTTTA 9 48 1 AAACCTATAA 0.853384 -44 TTTTTTAAAAAAACGCCAAAAAGCATTTTTT 10 22 0 AAACCCAAAA 0.880553 -233 AAACGGCACAAAAACCCTAATTTGATTAAGT 10 67 1 AAAACCTAAT 0.854776 -188 TAGCTAAAATAAAATCTATATTATAACTAAA 11 36 1 AAAACTATAT 0.536608 -31 CATTATAGACAAACCCTTAAAAGAAACACCT 12 53 1 AAACCTTAAA 0.940228 -100 CCCTTAAAAGAAACACCTTAATTTTAAGGCT 12 66 1 AAACCCTTAA 0.977744 -87 **** ****** Masking position 2 Map Score: 25.8034 Number of sites scoring better than the average of aligned sites = 2670 Number in coding regions = 2265 Number in noncoding regions = 405 Number of orfs with sites within 600 bp upstream = 271 Fraction of orfs with sites within 600 bp upstream = 0.0435271 Motif number 3 TAAAGATCTTAAGATTTAAGAAAAAACCCA 2 119 0 AAGATTTAAG 0.616363 -110 TAAGGACATCGCTCTTTAATTTTAATCATT 2 186 1 GCTCTTTAAT 0.799907 -43 GCGTTCTTTTAYGCTATAATTAAGACCAAA 3 15 1 AYGCTATAAT 0.810147 -43 TTATACCCCCTCCATTTAATGACATTTGGG 4 16 0 TCCATTTAAT 0.505647 -156 TAAAAAACAAACGATTTAATTCAAATTTAA 4 143 1 ACGATTTAAT 0.921592 -29 CGCCCTGCTCACGCTTTTAGTTTTAGCCCC 7 54 0 ACGCTTTTAG 0.800991 -247 GCTAGGCAAAGCGCTATCAGCGCTCATTAA 7 146 1 GCGCTATCAG 0.757913 -155 CCTTTAATATGCCCTTTAATGAGCGCTGAT 7 161 0 GCCCTTTAAT 0.940769 -140 ATCCTCATTTGCCCTTTAATATGCCCTTTA 7 173 0 GCCCTTTAAT 0.940769 -128 CGTTTCATCAAAGATTTAAGGCTAGAATTT 7 223 0 AAGATTTAAG 0.616363 -78 GTAATTGCATGCGCTATAATGCCAAAATTT 8 59 1 GCGCTATAAT 0.963142 -52 CCAATCGCTTTAAGCTGTTTATTA 9 5 1 TCGCTTTAAG 0.919144 -87 GGGATTTTTAACGCTTTAATAAACAGCTTA 9 21 0 ACGCTTTAAT 0.980311 -71 CTTAATAAAAACACTATAATACAAGTTTAA 9 50 1 ACACTATAAT 0.668934 -42 CCACTTATTCACGCTATAATAACGCC 12 137 1 ACGCTATAAT 0.962467 -16 ********** Masking position 9 Map Score: 11.8538 Number of sites scoring better than the average of aligned sites = 1347 Number in coding regions = 1246 Number in noncoding regions = 101 Number of orfs with sites within 600 bp upstream = 73 Fraction of orfs with sites within 600 bp upstream = 0.011725 Motif number 4 TTCAGTATTTTTAAAGGATTAAAAAGCTAAAA 1 66 0 TTAAGGATAA 0.958093 -140 TTTTAAGGAAATTAAGGAACAAA 1 193 1 ATAAGGAAAA 0.845847 -13 TTCCCCTTACTTAAATAATGAAATTTTCTTAA 2 14 1 TTAATAATAA 0.862775 -215 GATCTTAAGATTTAAGAAAAAACCCACTTTAA 2 113 0 TTAAGAAAAA 0.85014 -116 CAAACTCCTTGTCAATGATTAAAATTAAAGAG 2 197 0 GTAATGATAA 0.933575 -32 TTGGAATTGTATCAATAAAAAACTTAAGAAAA 4 108 0 ATAATAAAAA 0.607501 -64 TTAATTCAAATTTAAGGAAAAATT 4 158 1 TTAAGGAAAA 0.951781 -14 TTTGTTTGAATAATGAAAAATCCTAAA 6 6 1 TTAATAATAA 0.862775 -148 AATGATTAAAGTAAATGATTAATATTTTAGGA 6 31 0 GTAATGATAA 0.933575 -123 TTTACACAAATTAAATGATTAAAGTAAATGAT 6 44 0 TTAATGATAA 0.957215 -110 CTTTATCTCATTTTATGATGAAACTAAAAAAA 10 107 1 TTTATGATAA 0.704771 -148 TATTGGCTATTAAAAGGAAAAAA 10 242 1 TAAAGGAAAA 0.677481 -13 TGAATAAGTGGTGAATGAAAAAGGAATAACAT 12 116 0 GTAATGAAAA 0.923853 -37 ** ****** ** Masking position 5 Map Score: 11.7997 Number of sites scoring better than the average of aligned sites = 341 Number in coding regions = 277 Number in noncoding regions = 64 Number of orfs with sites within 600 bp upstream = 84 Fraction of orfs with sites within 600 bp upstream = 0.0134918 Motif number 5 TAGAATACCTTAAAAGAATTTAAAACCCCC 1 140 0 TAAAAGAATT 0.537422 -66 ATTATTTAAGTAAGGGGAATTA 2 3 0 TAAGGGGAAT 0.759043 -226 TAGTATAATCTAAGGGCGTTGCTCTGTATT 2 71 1 TAAGGGCGTT 0.875636 -158 AGGTATTTTTAAAGTGGGTTTTTTCTTAAA 2 105 1 AAAGTGGGTT 0.931511 -124 GATTAAAATTAAAGAGCGATGTCCTTAATC 2 183 0 AAAGAGCGAT 0.847112 -46 ACCAAAAATTCAAGGGGATTATTTTAACT 3 39 1 CAAGGGGATT 0.710424 -19 ACAACCCTATTAAAAGCGTTGTTATAGATC 6 113 0 TAAAAGCGTT 0.790791 -41 AGGAGCGTTTAAAGAGAGATTGACGCTAGG 7 122 1 AAAGAGAGAT 0.777441 -179 AAAATTCCCTAAAATGAGTTTAAGGATTTT 7 280 1 AAAATGAGTT 0.731767 -21 TCTGCTTGGATAAGGGGATTTA 8 99 1 TAAGGGGATT 0.870291 -12 AAAAAACGCCAAAAAGCATTTTTTAAGTTT 10 16 0 AAAAAGCATT 0.781563 -239 GTTTTTTTAAAAAATGGGTTTGGTTATAAA 10 39 1 AAAATGGGTT 0.894271 -216 GTTTCATCATAAAATGAGATAAAGTAAATC 10 101 0 AAAATGAGAT 0.561564 -154 ATTATAACTAAAAGGGGGTTTT 11 55 1 AAAGGGGGTT 0.963927 -12 ATGGATGCGAAAAAAGGATTTTC 12 4 0 AAAAAGGATT 0.874902 -149 GTGGTGAATGAAAAAGGAATAACATGTGAA 12 111 0 AAAAAGGAAT 0.766548 -42 ********** Masking position 3 Map Score: 12.1715 Number of sites scoring better than the average of aligned sites = 2005 Number in coding regions = 1686 Number in noncoding regions = 319 Number of orfs with sites within 600 bp upstream = 201 Fraction of orfs with sites within 600 bp upstream = 0.032284 Motif number 6 TGAAGTTTTTTAAAATTTGGAGTTTTTTCT 1 102 1 TAAAATTTGG 0.973294 -104 ATAATCCCCTTGAATTTTTGGTCTTAATTA 3 31 0 TGAATTTTTG 0.81089 -27 CTCCATTTAATGACATTTGGGTTAAA 4 7 0 TGACATTTGG 0.934563 -165 CGTTTGTTTTTTAAATTTGGAATTGTATCA 4 126 0 TTAAATTTGG 0.902347 -46 GATTTAAGGCTAGAATTTTGCGTTTTTTCA 7 211 0 TAGAATTTTG 0.795186 -90 CAAGTTCTTTTAAAATTTTGTCGTAATTGC 8 37 1 TAAAATTTTG 0.924541 -74 AAATTGACGCTAAATTTTGGCATTATAGCG 8 70 0 TAAATTTTGG 0.94219 -41 ATGCTTAACCTTTGGGATTTGATTA 9 77 0 TAACCTTTGG 0.885854 -15 ********** Masking position 6 Map Score: 3.42352 Number of sites scoring better than the average of aligned sites = 162 Number in coding regions = 133 Number in noncoding regions = 29 Number of orfs with sites within 600 bp upstream = 33 Fraction of orfs with sites within 600 bp upstream = 0.00530035 Motif number 7 TTAAAGAGAGATTGACGCTAGGCAAAGCGC 7 130 1 ATTGACGCTA 0.987326 -171 CCAAGCAGAAATTGACGCTAAATTTTGGCA 8 78 0 ATTGACGCTA 0.987326 -33 AAAGAAGCATAATCAAGCTATTTATTTACT 10 175 0 AATCAAGCTA 0.885842 -80 TTCACCACTTATTCACGCTATAATAACGCC 12 133 1 ATTCACGCTA 0.987326 -20 ********** Masking position 5 Map Score: 1.59453 Number of sites scoring better than the average of aligned sites = 49 Number in coding regions = 45 Number in noncoding regions = 4 Number of orfs with sites within 600 bp upstream = 4 Fraction of orfs with sites within 600 bp upstream = 0.000642467 Motif number 8 AGAAGCAGTATTTTAGCTTTTTAATCCTTT 1 56 1 TTTTAGCTTT 0.554474 -150 TTCAGTATTTTTAAAGGATTAAAAAGCTAA 1 68 0 TTAAAGGATT 0.506487 -138 AATTGAAGTTTTTTAAAATTTGGAGTTTTT 1 99 1 TTTTAAAATT 0.523772 -107 TTTAAATTCTTTTAAGGTATTCTAACAAGA 1 146 1 TTTAAGGTAT 0.795966 -60 TTGAGATAGTTTTAAGGAAATTAAGGAACA 1 184 1 TTTAAGGAAA 0.465452 -22 GCTCTGTATTTTTTAGGTATTTTTAAAGTG 2 91 1 TTTTAGGTAT 0.809381 -138 TCTTTAAAGATCTTAAGATTTAAGAAAAAA 2 123 0 TCTTAAGATT 0.623142 -106 TCTTAAGATCTTTAAAGATTTTAAAAACTA 2 135 1 TTTAAAGATT 0.9006 -94 AAAAGCGTTCTTTTAYGCTATAATTAAGAC 3 11 1 TTTTAYGCTA 0.617773 -47 GAGAATAAGTTTTAAAGTTTTTTAATTTTT 4 46 0 TTTAAAGTTT 0.9006 -126 CTTTTCTTTTTCTTAAGTTTTTTATTGATA 4 101 1 TCTTAAGTTT 0.623142 -71 ATCGTTTGTTTTTTAAATTTGGAATTGTAT 4 128 0 TTTTAAATTT 0.523772 -44 TTAATTCAAATTTAAGGAAAAATT 4 158 1 TTTAAGGAAA 0.465452 -14 ATGATTAATATTTTAGGATTTTTCATTATT 6 19 0 TTTTAGGATT 0.950059 -135 CTGCTCACGCTTTTAGTTTTAGCCCCGTCA 7 50 0 TTTTAGTTTT 0.456433 -251 TCATCAAAGATTTAAGGCTAGAATTTTGCG 7 219 0 TTTAAGGCTA 0.741241 -82 CTAAAATGAGTTTAAGGATTTTA 7 288 1 TTTAAGGATT 0.945882 -13 TCTCAAGTTCTTTTAAAATTTTGTCGTAAT 8 34 1 TTTTAAAATT 0.523772 -77 TTAAGGGATTTTTAACGCTTTAATAAACAG 9 25 0 TTTAACGCTT 0.556126 -67 AAAAAGCATTTTTTAAGTTTGACAA 10 6 0 TTTTAAGTTT 0.907931 -249 AACGAAATTTTTTTTAGTTTCATCATAAAA 10 117 0 TTTTTAGTTT 0.366705 -138 AGGTGTTTCTTTTAAGGGTTTGTCTATAAT 12 54 0 TTTAAGGGTT 0.784717 -99 ACACCTTAATTTTAAGGCTTCATTCACATT 12 78 1 TTTAAGGCTT 0.927716 -75 ********** Masking position 1 Map Score: 14.4317 Number of sites scoring better than the average of aligned sites = 1840 Number in coding regions = 1506 Number in noncoding regions = 334 Number of orfs with sites within 600 bp upstream = 265 Fraction of orfs with sites within 600 bp upstream = 0.0425634 Motif number 9 AGTTTTTTAATTTTTTTATACCCCCTCCATT 4 30 0 TTTTTTATAC 0.77536 -142 ATTAAATCGTTTGTTTTTTAAATTTGGAATT 4 132 0 TTGTTTTTAA 0.623792 -40 AATCATTTAATTTGTGTAAAAACAAAACACT 6 56 1 TTTTGTAAAA 0.692156 -98 TTTAATAGGGTTGTGGTATAAATATTCTTAT 6 129 1 TTGGGTATAA 0.861879 -25 CTTTTTGGCGTTTTTTTAAAAAATGGGTTTG 10 30 1 TTTTTTAAAA 0.821214 -225 AAAAAATGGGTTTGGTTATAAAACGGCACAA 10 47 1 TTTGTTATAA 0.947176 -208 CTAAAAAAAATTTCGTTATAATCTAAAATAA 10 130 1 TTTGTTATAA 0.947176 -125 AAAACCCCCTTTTAGTTATAATATAGATTTT 11 46 0 TTTGTTATAA 0.947175 -21 TCTATAATGCTTGCTTTATAATAAGCTAATG 12 31 0 TTGTTTATAA 0.921777 -122 CTTTTAAGGGTTTGTCTATAATGCTTGCTTT 12 45 0 TTTTCTATAA 0.814671 -108 *** ******* Masking position 7 Map Score: 4.37842 Number of sites scoring better than the average of aligned sites = 125 Number in coding regions = 79 Number in noncoding regions = 46 Number of orfs with sites within 600 bp upstream = 50 Fraction of orfs with sites within 600 bp upstream = 0.00803084 Motif number 10 CCCCCTCCATTTAATGACATTTGGGTTAAA 4 11 0 TTAATGACAT 0.895864 -161 ACTTTAAAACTTATTCTCATTAATAGAACA 4 58 1 TTATTCTCAT 0.923228 -114 GTAACCACCCTTAATGTCATCGCCCTGCTC 7 74 0 TTAATGTCAT 0.874729 -227 TAAAATCCTTAAACTCATTTTAGGGAAT 7 283 0 TTAAACTCAT 0.783264 -18 TAATACAAGTTTAATCAAATCCCAAAGGTT 9 66 1 TTAATCAAAT 0.847598 -26 AAATCAAAACTTAATCAAATTAGGGTTTTT 10 76 0 TTAATCAAAT 0.847598 -179 TTTGATTTACTTTATCTCATTTTATGATGA 10 98 1 TTTATCTCAT 0.783264 -157 TTTTAAGGCTTCATTCACATTTCATTCACA 12 87 1 TCATTCACAT 0.87867 -66 CATTCACATTTCATTCACATGTTATTCCTT 12 98 1 TCATTCACAT 0.87867 -55 ********** Masking position 9 Map Score: 4.12577 Number of sites scoring better than the average of aligned sites = 175 Number in coding regions = 155 Number in noncoding regions = 20 Number of orfs with sites within 600 bp upstream = 22 Fraction of orfs with sites within 600 bp upstream = 0.00353357 Motif number 11 TATGTGCGCGATTGCGTGCGGTGTGCGGAA 1 11 0 ATTGCGTGCG 0.944452 -195 AATGTCATTAAATGGAGGGGGTATAAAAAA 4 20 1 AATGGAGGGG 0.853696 -152 AGTCAAGGTGATGGGGTGGAAGGAAATAAT 5 20 1 ATGGGGTGGA 0.821258 -20 AAACGATCTGATGGGATCGGT 8 2 0 ATGGGATCGG 0.910072 -109 TTTTGTCGTAATTGCATGCGCTATAATGCC 8 52 1 ATTGCATGCG 0.96193 -59 TTAGCTAAAAATGGCATGGGTTTTAGCAAG 11 13 0 ATGGCATGGG 0.975656 -54 ATAATAAGCTAATGGATGCGAAAAAAGGAT 12 15 0 AATGGATGCG 0.935223 -138 ********** Masking position 1 Map Score: 0.309432 Number of sites scoring better than the average of aligned sites = 207 Number in coding regions = 195 Number in noncoding regions = 12 Number of orfs with sites within 600 bp upstream = 14 Fraction of orfs with sites within 600 bp upstream = 0.00224863 Motif number 12 ********** No masking Map Score: 3.91042e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 ********** No masking Map Score: 3.91042e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: 3.91042e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0