AlignACE version 2.2 July 7, 1998 alignACE -a/home/amcguire/genomes/ORF_mjan.txt -z/home/amcguire/genomes/mjan.fna -inarL_mjan_opreg_300.orf -g0.314 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.314 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 MJ0030 300 coenzyme F420-reducing hydrogenase, delta subunit (frcD) #2 MJ0033 254 succinate dehydrogenase, flavoprotein subunit (sdhA) #3 MJ0081 300 methyl coenzyme M reductase II, subunit beta (mrtB) #4 MJ0084 261 CODH nickel-insertion accessory protein (cooC) #5 MJ0085 134 iron transport periplasmic binding protein, putative (ceuE) #6 MJ0086 36 unspecified methyltransferase #7 MJ0087 23 hemin permease (hemU) #8 MJ0090 80 collagenase (prtC) #9 MJ0091 95 Na+/Ca+ exchanger protein, putative #10 MJ0292 186 conserved hypothetical protein #11 MJ0649 172 NADH oxidase (nox) #12 MJ0965 38 uroporphyrin-III C-methyltransferase (cobA) #13 MJ1165 238 formylmethanofuran dehydrogenase, subunit E (tungsten) (fwdE) Motif number 1 AAGAGATTATAGAAGTTAGAAAAATGTTATAAGC 1 110 1 AAATTAAAAA 0.964533 -191 GTTTTGATGAACCTTTTACTAAAAGGTTCATGTG 2 45 1 ACTTTAAAAA 0.78718 -210 AAAAAGAACAAGAAAATAGTAATATTTTTAATAA 2 120 0 AAAATAAATA 0.943797 -135 AAATCTTTAAAATCTTTAAAAAAATTTTGAATTC 3 140 0 ATCTTAAAAA 0.676401 -161 AATAATATTAAAATGATAAAATTAAAAAAATCTT 3 167 0 AATATAATTA 0.754012 -134 AAAAATGTTAAAATAATAATATTAAAATGATAAA 3 181 0 AATATAATTA 0.754012 -120 ATTTTATCCTAAAAATTACTAAAAAATGTTAAAA 3 202 0 AAATTAAAAA 0.964533 -99 CAGCTATAGAAAATGATAGTAATAGGTATATAAA 3 243 0 AATATAAATA 0.903391 -58 AGCTGTAGTAATATATTAACAAAAAGGTTGGTGT 3 272 1 AATTTAAAAA 0.937882 -29 TCCAAAAAATAAAACTTAAAATAAGATAATAAAG 4 12 0 AAATTAATAA 0.899282 -250 CCTCCAATTAAAATTTTAAAATTAAAAATAAAGT 4 45 0 AATTTAATTA 0.823766 -217 ATAGATTCAAACATTTTATCAAAAGTTTTAGATA 4 87 1 AATTTAAAAA 0.938056 -175 AAAGTTTTAGATAAAATAATATTAATGGAAGAGA 4 108 1 AAAATAATTA 0.84647 -154 ATGTTCCTCCACTTGTTAGAAAAAGATTTATACT 4 188 1 ATTTTAAAAA 0.868702 -74 AAAATTATATAAAAAATAGAAAAAAG 5 3 0 AAAATAAAAA 0.946871 -132 TTTTTTATATAATTTTTATGAATATTGATGTATT 5 21 1 ATTTTAAATA 0.86146 -114 TATCAAAAATAATCGTTAAAAATACATCAATATT 5 41 0 ATCTTAAATA 0.663242 -94 AAAAATATATATTAGATATTAAAAATTTTTGTTC 5 83 1 ATAATAAAAA 0.886183 -52 TCACCAAAATAAAAATTATAAAAAATTAAAAA 6 9 0 AAATTAAAAA 0.964532 -28 AATAATTCAAAAAATGTGATAGT 7 1 1 ATATTCAAAA 0.575535 -23 TATTTGAAGTATAAAATAGCAATAACCAATATGA 8 30 0 AAAATAAATA 0.943797 -51 AATATAATTTAAAATTTAAAAAAATTTCTAA 8 60 1 AAATTAAAAA 0.964532 -21 TATTATCACCAAAAGTTATAAATAAGATTTATCA 10 135 1 AAATTAAATA 0.962439 -52 ATTAATCATTATAAATTCCTAATAAG 10 171 1 AAATTCAATA 0.745177 -16 GAATAAGATTATTAAATAATAAAAGAGGGGATAG 11 12 0 ATAATAAAAA 0.886181 -161 ATTACTAAAAATAACTTAAAAATAGAATAAGATT 11 36 0 AAATTAAATA 0.962439 -137 TAAATTTCTAATATATTACTAAAAATAACTTAAA 11 50 0 AATTTAAAAA 0.938056 -123 TAGAACTTCTAACTAATACAATAATTGTGAAATA 11 82 0 ACTATAATAA 0.443165 -91 CCCATAAAAATTAGTATTAGAAGCTATAA 12 6 1 AAATTAATTA 0.893766 -33 AACCATAAAAAATAAATATTATAATGATTTAGAT 13 25 0 ATAATAATAA 0.718816 -214 GGTAAAGCTAATAATATAAAAATACAACCATAAA 13 50 0 AAAATAAATA 0.943795 -189 TAAATAGTTCAACATATATGAATAAAAGTTCTAT 13 107 0 ACAATAAATA 0.803976 -132 TATATGTTGAACTATTTATAAATATGTGAGCAAG 13 123 1 ATATTAAATA 0.917998 -116 * ** *** **** Masking position 7 Map Score: 46.2303 Number of sites scoring better than the average of aligned sites = 1671 Number in coding regions = 1176 Number in noncoding regions = 495 Number of orfs with sites within 600 bp upstream = 407 Fraction of orfs with sites within 600 bp upstream = 0.065371 Motif number 2 TTCTTGTTCTTTTTTTATTTATACTATGCCA 2 140 1 TTTTTATTTA 0.962887 -115 CTATGCCAATTTTTTCATTTAGGATTATTTT 2 163 1 TTTTTATTTA 0.962887 -92 CATCAAAGCTATTTTGATTTATAAGTTTTAA 2 197 1 ATTTTATTTA 0.945866 -58 TTTAAAGATTTTTTTAATTTTATCATTTTAA 3 163 1 TTTTTATTTT 0.925684 -138 TAATTTTATCATTTTAATATTATTATTTTAA 3 177 1 ATTTTATATT 0.80099 -124 TAAAATAGAAAATTTTATATACCTATTACTA 3 230 1 AATTTATATA 0.699851 -71 TCTTTATTATCTTATTTTAAGTTTTATT 4 8 1 TATCTATTTT 0.665714 -254 TCTTATTTTAAGTTTTATTTTTTGGACTTTA 4 20 1 AGTTTATTTT 0.620777 -242 TTGGACTTTATTTTTAATTTTAAAATTTTAA 4 41 1 TTTTTATTTT 0.925684 -221 TAAAACCTAATATCTTATTTAGTATAAATCT 4 211 0 TATCTATTTA 0.805625 -51 CCTCTCCCTCAGTCTGATTTAAATTTAATTA 4 240 0 AGTCTATTTA 0.652876 -22 CTTTTTTCTATTTTTTATATAATTTTTATGA 5 11 1 TTTTTATATA 0.925383 -124 AAATTTTTAATATCTAATATATATTTTTCGG 5 80 0 TATCTATATA 0.651659 -55 TTTTTAATTTTTTATAATTTT 6 1 1 TTTTTATTTT 0.925684 -36 ATTTTTTATAATTTTTATTTTGGTGATAAA 6 17 1 ATTTTATTTT 0.893484 -20 ACTATCACATTTTTTGAATTATT 7 3 0 TTTTTAATTA 0.728707 -21 TCTTTTTTATATAATGAGGTCAT 8 3 1 TTTTTATATA 0.925383 -78 ATTTTTTTAAATTTTAAATTATATTTGAAGT 8 54 0 ATTTTAATTA 0.64401 -27 AATAATGATAAATCTTATTTATAACTTTTGG 10 143 0 AATCTATTTA 0.736402 -44 TATCCCCTCTTTTATTATTTAATAATCTTAT 11 13 1 TTTATATTTA 0.649885 -160 TCTTATTCTATTTTTAAGTTATTTTTAGTAA 11 38 1 TTTTTAGTTA 0.693053 -135 GTGAAATAAATTTCTAATATATTACTAAAAA 11 59 0 TTTCTATATA 0.872707 -114 TTATGGTTGTATTTTTATATTATTAGCTTTA 13 51 1 ATTTTATATT 0.80099 -188 AAGTAGAAACTTTTTTATATAGGTGTGTGTC 13 156 0 TTTTTATATA 0.925383 -83 TTAGTTGATGATTTTCATTTATAAATACTAT 13 198 0 ATTTTATTTA 0.945866 -41 ***** ***** Masking position 5 Map Score: 29.8216 Number of sites scoring better than the average of aligned sites = 1370 Number in coding regions = 908 Number in noncoding regions = 462 Number of orfs with sites within 600 bp upstream = 343 Fraction of orfs with sites within 600 bp upstream = 0.0550916 Motif number 3 TAGTAAAAGGTTCATCAAAACGGATGCACT 2 36 0 TTCATCAAAA 0.980986 -219 GATTATTTTTTTCATCAAAGCTATTTTGAT 2 185 1 TTCATCAAAG 0.867426 -70 TTAAAACTTATAAATCAAAATAGCTTTGAT 2 198 0 TAAATCAAAA 0.623792 -57 TTTTTATCACCAAAAATAGGATACC 2 240 0 ATCACCAAAA 0.968683 -15 GCCTAAAAGTATCATCAATAGCAAATAGAG 3 52 0 ATCATCAATA 0.936809 -249 ATTCAAACATTTTATCAAAAGTTTTAGATA 4 91 1 TTTATCAAAA 0.911276 -171 TACATCAATATTCATAAAAATTATATAAAA 5 23 0 TTCATAAAAA 0.731691 -112 TCGTTAAAAATACATCAATATTCATAAAAA 5 33 0 TACATCAATA 0.796342 -102 TTTTCGGTAGTTTATCAAAAATAATCGTTA 5 57 0 TTTATCAAAA 0.911276 -78 TTTATCACCAAAATAAAAATTAT 6 24 0 ATCACCAAAA 0.968683 -13 TAAAATAGCAATAACCAATATGACCTCATT 8 23 0 ATAACCAATA 0.743011 -58 AAATTTTCAGTTCATCCATATTGTAT 9 7 0 TTCATCCATA 0.754413 -89 TAAGCCTATTATCACCAAAAGTTATAAATA 10 129 1 ATCACCAAAA 0.968683 -58 AAAAATGAACTTAACCAAAAAGTTTTTATA 11 114 0 TTAACCAAAA 0.909599 -59 CAAAATCATGATCATCAAAAAGGATAAAAA 11 148 1 ATCATCAAAA 0.969303 -25 TATTATTAGCTTTACCAATATAAAGCTTTT 13 68 1 TTTACCAATA 0.825297 -171 ********** Masking position 4 Map Score: 19.1524 Number of sites scoring better than the average of aligned sites = 567 Number in coding regions = 448 Number in noncoding regions = 119 Number of orfs with sites within 600 bp upstream = 117 Fraction of orfs with sites within 600 bp upstream = 0.0187922 Motif number 4 TAGAAGTTAGAAAAATGTTATAAGCCTCGAGG 1 119 1 AAAAAGTTAA 0.953138 -182 TTAAACCCTTAAAAAACTTAAA 1 289 1 AAAAACTTAA 0.87593 -12 ATTTTGATTTATAAGTTTTAAATATCTGATGA 2 207 1 ATAAGTTTAA 0.809294 -48 AAAAATCTTTAAAATCTTTAAAAAAATTTTGA 3 144 0 AAAATTTTAA 0.871951 -157 AAAATTACTAAAAAATGTTAAAATAATAATAT 3 193 0 AAAAAGTTAA 0.953138 -108 GGATAAAATAGAAAATTTTATATACCTATTAC 3 227 1 GAAAATTTAA 0.625377 -74 AGTCCAAAAAATAAAACTTAAAATAAGATAAT 4 16 0 ATAAACTTAA 0.698184 -246 GCCCTCCAATTAAAATTTTAAAATTAAAAATA 4 49 0 TAAAATTTAA 0.529701 -213 ACATTTTATCAAAAGTTTTAGATAAAATAATA 4 97 1 AAAAGTTTAA 0.928324 -165 ACTTGTTAGAAAAAGATTTATACTAAATAAGA 4 198 1 AAAAGTTTAA 0.928324 -64 CAATATTCATAAAAATTATATAAAAAATAGAA 5 16 0 AAAAATATAA 0.836838 -119 TTTATCAAAAATAATCGTTAAAAATACATCAA 5 45 0 ATAATGTTAA 0.659017 -90 TGATATGAACAAAAATTTTTAATATCTAATAT 5 91 0 AAAAATTTTA 0.690514 -44 CATATAGCCTAAAATGGTGACAAT 5 121 1 AAAATGTGAA 0.538506 -14 TCACCAAAATAAAAATTATAAAAAATTAAAAA 6 11 0 AAAAATATAA 0.836838 -26 AATAATTCAAAAAATGTGATAGT 7 10 1 AAAAAGTGAA 0.800941 -14 TATACTTCAAATATAATTTAAAATTTAAAAAA 8 51 1 ATATATTTAA 0.491849 -30 TTAAAATTTAAAAAAATTTCTAA 8 68 1 AAAAATTTCA 0.834076 -13 ATATTCTGCAATAATATTTAAACTTAAGCAAA 9 35 0 ATAATTTTAA 0.690517 -61 AAAAGTTATACATCCAAGGGTT 10 1 1 AAAAGTATAA 0.738836 -186 TATTATCACCAAAAGTTATAAATAAGATTTAT 10 135 1 AAAAGTATAA 0.738836 -52 ATATTACTAAAAATAACTTAAAAATAGAATAA 11 40 0 AAATACTTAA 0.470402 -133 AACTAATACAATAATTGTGAAATAAATTTCTA 11 74 0 ATAATGTGAA 0.276586 -99 GAACTTAACCAAAAAGTTTTTATAGAACTTCT 11 106 0 AAAAATTTTA 0.690284 -67 CATGATCATCAAAAAGGATAAAAAATAAT 11 154 1 AAAAAGATAA 0.816268 -19 TAAAATAAGTTATAGCTTCTAATA 12 25 0 AAATAGTTAA 0.719012 -14 TTTTTGGTAGAAAAGCTTTATATTGGTAAAGC 13 76 0 AAAAGTTTAA 0.928324 -163 ACATATATGAATAAAAGTTCTATTTTTGGTAG 13 98 0 ATAAAGTTCA 0.587933 -141 CACCTATATAAAAAAGTTTCTACTTAAACTTC 13 162 1 AAAAATTTCA 0.834083 -77 ***** **** * Masking position 3 Map Score: 27.6226 Number of sites scoring better than the average of aligned sites = 1845 Number in coding regions = 1338 Number in noncoding regions = 507 Number of orfs with sites within 600 bp upstream = 382 Fraction of orfs with sites within 600 bp upstream = 0.0613556 Motif number 5 CACAGCAGTATGCTGAAGTCATAATGAGAGC 1 23 1 TGCTAAGTCA 0.914509 -278 TATTTATTCCTGCGAAAGTCCTGTTATGCCT 1 172 0 TGCGAAGTCC 0.993047 -129 ATATATAAACTGCGAAAGTCCTGTTTCTTTG 1 248 1 TGCGAAGTCC 0.993047 -53 GTATAGCCTCTGCGTAAGTTCCATTGTGGGA 3 22 0 TGCGAAGTTC 0.991615 -279 TTCAAAAAAATGCGTAAGTTCTATTGAATAG 3 93 1 TGCGAAGTTC 0.991615 -208 CTGAAAATTTTGCTTAAGTTTAAATATTATT 9 27 1 TGCTAAGTTT 0.898562 -69 AAAAACTTTTTGGTTAAGTTCATTTTTGTGT 11 117 1 TGGTAAGTTC 0.916722 -56 **** ****** Masking position 6 Map Score: 10.0028 Number of sites scoring better than the average of aligned sites = 53 Number in coding regions = 13 Number in noncoding regions = 40 Number of orfs with sites within 600 bp upstream = 30 Fraction of orfs with sites within 600 bp upstream = 0.0048185 Motif number 6 AAAATAGTAATATTTTTAATAAGGCACTGG 2 112 0 TATTTTTAAT 0.952495 -143 TCTTTAAAAAAATTTTGAATTCCTCACAGA 3 132 0 AATTTTGAAT 0.608196 -169 ATTTTAAAGATTTTTTTAATTTTATCATTT 3 161 1 TTTTTTTAAT 0.552083 -140 TAAAATAGAAAATTTTATATACCTATTACT 3 230 1 AATTTTATAT 0.588575 -71 TTTTGGACTTTATTTTTAATTTTAAAATTT 4 39 1 TATTTTTAAT 0.952495 -223 TTTAATTTTAAAATTTTAATTGGAGGGCAT 4 53 1 AAATTTTAAT 0.735215 -209 CTTTTTTCTATTTTTTATATAATTTTTA 5 9 1 TATTTTTTAT 0.939508 -126 ATTTTTTATATAATTTTTATGAATATTGAT 5 20 1 TAATTTTTAT 0.716806 -115 AATATTGATGTATTTTTAACGATTATTTTT 5 41 1 TATTTTTAAC 0.63569 -94 TTTTAACGATTATTTTTGATAAACTACCGA 5 54 1 TATTTTTGAT 0.74521 -81 TATGAACAAAAATTTTTAATATCTAATATA 5 90 0 AATTTTTAAT 0.94456 -45 TTTTTAATTTTTTATAATTTTTATT 6 6 1 AATTTTTTAT 0.929564 -31 AATTTTTTATAATTTTTATTTTGGTGATAA 6 16 1 AATTTTTATT 0.5001 -21 TCTTTTTTATATAATGAGGT 8 1 1 TCTTTTTTAT 0.722543 -80 AATTTTTTTAAATTTTAAATTATATTTGAA 8 56 0 AATTTTAAAT 0.648732 -25 CTTATTAGGAATTTATAATGATTAATAAT 10 168 0 AATTTATAAT 0.500098 -19 AATCTTATTCTATTTTTAAGTTATTTTTAG 11 36 1 TATTTTTAAG 0.63569 -137 ATTTTTAAGTTATTTTTAGTAATATATTAG 11 47 1 TATTTTTAGT 0.63569 -126 TTGTGAAATAAATTTCTAATATATTACTAA 11 62 0 AATTTCTAAT 0.597216 -111 CTTAACCAAAAAGTTTTTATAGAACTTCTA 11 105 0 AAGTTTTTAT 0.557839 -68 ATTATTTTTTATCCTTTTTGAT 11 161 0 TATTTTTTAT 0.939508 -12 CTTCTAATACTAATTTTTATGGG 12 4 0 TAATTTTTAT 0.716806 -35 TTATAATATTTATTTTTTATGGTTGTATTT 13 35 1 TATTTTTTAT 0.939508 -204 TTAAGTAGAAACTTTTTTATATAGGTGTGT 13 159 0 ACTTTTTTAT 0.68875 -80 ********** Masking position 5 Map Score: 22.6494 Number of sites scoring better than the average of aligned sites = 1014 Number in coding regions = 689 Number in noncoding regions = 325 Number of orfs with sites within 600 bp upstream = 286 Fraction of orfs with sites within 600 bp upstream = 0.0459364 Motif number 7 TGAAGTCATAATGAGAGCTTATGATATATGA 1 36 1 AGAGAGCTTA 0.902246 -265 GAAGAGACAAAAGAGATTATAGAAGTTAGAA 1 100 1 AGAGATTATA 0.8184 -201 ATGTGAAGGAAATAGAGCATAGGAAAGAATT 2 74 1 ATAGAGCATA 0.920186 -181 TAAATATCTGATGAGGGTATCCTATTTTTGG 2 225 1 AGAGGGTATC 0.873165 -30 ATCAATAGCAAATAGAGTATAGCCTCTGCGT 3 38 0 ATAGAGTATA 0.818398 -263 AAATTTTAATTGGAGGGCATAATAATAGATT 4 63 1 TGAGGGCATA 0.95971 -199 TTTTTATATAATGAGGTCATATTGGTTATTG 8 14 1 AGAGGTCATA 0.936881 -67 TAATAAAGATTTGAGAGCATATCAATAGGAG 10 36 0 TGAGAGCATA 0.948723 -151 TAAATAATAAAAGAGGGGATAGT 11 3 0 AGAGGGGATA 0.945306 -170 * ********* Masking position 4 Map Score: 3.63977 Number of sites scoring better than the average of aligned sites = 194 Number in coding regions = 175 Number in noncoding regions = 19 Number of orfs with sites within 600 bp upstream = 17 Fraction of orfs with sites within 600 bp upstream = 0.00273049 Motif number 8 ATGAGCTTCATGTGCAACACACGTTATAGTTA 1 63 1 TGGCAAACAC 0.989439 -238 TCTAACAAGTGGAGGAACATACACTGGTCTGA 4 176 0 GGGGAAATAC 0.930093 -86 CATATCAATAGGAGCAAAACCCTTGGATGTAT 10 18 0 GGGCAAACCC 0.990915 -169 TATATTGCCATGGGGAAAACCCCTATTGGGAT 10 99 0 TGGGAAACCC 0.985801 -88 TATAAATATGTGAGCAAGACACACACCTATAT 13 139 1 TGGCAAACAC 0.989439 -100 ** **** **** Masking position 6 Map Score: 0.75239 Number of sites scoring better than the average of aligned sites = 9 Number in coding regions = 5 Number in noncoding regions = 4 Number of orfs with sites within 600 bp upstream = 5 Fraction of orfs with sites within 600 bp upstream = 0.000803084 Motif number 9 TGGAAGCTTAAATTAAACCCTTAAAAAACTTAA 1 277 1 AATAACCTTA 0.846392 -24 TTTGATGAAAAAAATAATCCTAAATGAAAAAAT 2 171 0 AAAAACCTAA 0.965602 -84 TTTGAATCATAAAGAAAGCCTAAAAGTATCATC 3 66 0 AAAAACCTAA 0.965605 -235 TGATAAAATTAAAAAAATCTTTAAAATCTTTAA 3 155 0 AAAAACTTTA 0.902281 -146 AAAGTCCAAAAAATAAAACTTAAAATAAGATAA 4 17 0 AAAAACTTAA 0.960373 -245 TAAAATTTTAAAATTAAAAATAAAGTCCAAAAA 4 38 0 AAAAAAATAA 0.451171 -224 AGTTTTAGATAAAATAATATTAATGGAAGAGAC 4 110 1 AAAAAATTAA 0.722329 -152 ATTTAAATTTAATTAAAACCTAATATCTTATTT 4 222 0 AATAACCTAA 0.935314 -40 TAGTTTATCAAAAATAATCGTTAAAAATACATC 5 47 0 AAAAACGTTA 0.71028 -88 TCTGCAATAATATTTAAACTTAAGCAAAATTTT 9 30 0 TATAACTTAA 0.533291 -66 AATATATTCAAAAACAAACTTTAATTAATTTAG 9 62 1 AAAAACTTTA 0.9023 -34 TCCCCATGGCAATATAAGCCTATTATCACCAAA 10 115 1 AATAACCTAT 0.569644 -72 ATATATTACTAAAAATAACTTAAAAATAGAATA 11 41 0 AAATACTTAA 0.704605 -132 TTTTGACACAAAAATGAACTTAACCAAAAAGTT 11 120 0 AAAGACTTAA 0.779507 -53 ATAATATAAAAATACAACCATAAAAAATAAATA 13 41 0 AATAACATAA 0.797751 -198 *** ** ***** Masking position 7 Map Score: 9.66935 Number of sites scoring better than the average of aligned sites = 354 Number in coding regions = 280 Number in noncoding regions = 74 Number of orfs with sites within 600 bp upstream = 72 Fraction of orfs with sites within 600 bp upstream = 0.0115644 Motif number 10 ********** No masking Map Score: -1.97288e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 11 ********** No masking Map Score: -1.97288e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 12 ********** No masking Map Score: -1.97288e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0