AlignACE version 2.2 July 7, 1998 alignACE -a/home/amcguire/genomes/ORF_mjan.txt -z/home/amcguire/genomes/mjan.fna -irpoH_mjan_opreg_100.orf -g0.314 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.314 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 MJ0153 239 acetyl-CoA decarbonylase/synthase, subunit alpha (cdhA) #2 MJ0154 43 acetyl-CoA decarbonylase/synthase, subunit epsilon (cdhB) #3 MJ0156 22 acetyl-CoA decarbonylase/synthase, subunit beta (cdhC) #4 MJ0623 300 conserved hypothetical protein #5 MJ0625 49 M. jannaschii predicted coding region MJ0625 #6 MJ0626 92 conserved hypothetical protein #7 MJ0627 30 M. jannaschii predicted coding region MJ0627 #8 MJ0999 202 thermosome (ths) #9 MJ1146 66 glyceraldehyde 3-phosphate dehydrogenase #10 MJ1156 119 cell division control protein 48 (cdc48), AAA family #11 MJ1176 121 proteasome regulatory AAA-ATPase #12 MJ1206 300 conserved hypothetical protein #13 MJ1237 120 proteasome, subunit beta (psmB) #14 MJ1376 86 cell division protein FtsJ #15 MJ1417 132 ATP-dependent protease LA, putative (lon) Motif number 1 ATGCCCTATCATAAACTTTATATTTTAT 1 7 1 TATATAACTT 0.832117 -233 ATGCCAACACTAATTTATTTTTTTAAATTAAT 1 37 1 TAATTATTTT 0.629167 -203 TTACGCATTTTAAAAATTGTTTTGTAGGGATT 1 86 0 TAAAATTTTT 0.564684 -154 AAAACTTTAATATATAAAGTTTGTTATGACTA 1 170 0 TATTAAATTT 0.942104 -70 TAAGGTTAGTTTTTAAAACTTTAATATATAAA 1 184 0 TTTAAAATTT 0.884241 -56 TAGGACTTTTTATATATAGTTTGTGGTGGTGC 4 16 0 TATTATATTT 0.866652 -285 CCAAAAAAGATATATAATGTTTGTTTAAAATC 5 21 0 TATTAATTTT 0.927101 -29 CATTACATAATAAAAAATCTTTTAGGTTTAGC 6 26 0 TAAAAATTTT 0.764593 -67 GTTTTGAGTATTTTAAAACCTTAATGGTTTCA 6 56 0 TTTAAAACTT 0.850578 -37 AATAGCATTTATATTGTTTTGAGTATTTT 6 74 0 TTTTATTTTT 0.729426 -19 TAATTTTTTATAATACTTTTTGGTGAAA 7 7 1 TTTTAATCTT 0.834164 -24 CAAAGCTATCTTATAAATCTTTGTTTCATCAG 8 45 1 TTAAAATTTT 0.632922 -158 AATGAAATTCTATATAAACCTTTCGGTTTTGT 8 139 0 TATTAAACTT 0.923819 -64 GTAGGATTAATAATAATTACTTTGGCAATATA 9 23 0 TAAAATTCTT 0.491596 -44 AGATTCACCATTTGAAATTTTTGTAGGATTAA 9 45 0 TTTAAATTTT 0.856526 -22 GTTGAAGTTCTATATAAACCTTTCGGTTTTGT 10 38 0 TATTAAACTT 0.923819 -82 TTTATCTTTTTATAATAATTTTCTCACTGGAG 10 80 0 TATATAATTT 0.869298 -40 TCCCTCCGTTTATTTTATCTTTTTATAATAAT 10 93 0 TATTTATTTT 0.854589 -27 AAAATTCTTATATTTAAATTTTATGT 11 5 0 TATTAAATTT 0.942104 -117 TCCCTTCACTTAACTTAAATTTACCGGTGATA 11 98 1 TAATTAATTT 0.684596 -24 TCAGAACTACTATAAATACTTTTCGGTTTTAT 12 135 1 TATAATATTT 0.851814 -166 GGTTTTATTGTATTAAATATTTTAATTAATGT 12 159 1 TATAAATTTT 0.918355 -142 TATAAAAAATTATTTTTATTTTGACGCCTATT 12 204 0 TATTTTATTT 0.750213 -97 TAAAAATAATTTTTTATACTTTGATTTGTTTT 12 218 1 TTTTATATTT 0.775251 -83 ATCTTTTCTTATTTTTAGGTTAAGAT 13 5 1 TTTTTATTTT 0.757236 -116 TATTTCTCACTTTTAATAGCTTTCTAATAATA 13 70 0 TTTAATACTT 0.694522 -51 TAATAGGTAATAAAATAAACTTAGGAAAAGCT 14 18 0 TAAATAACTT 0.588734 -69 TTTTATTACCTATTATTTCTTTAAAAATTACA 14 35 1 TATATTTTTT 0.674913 -52 ACATTTAATATTTTTAAAATTTGTGGTGAAAC 14 64 1 TTTTAAATTT 0.896228 -23 TAATCTTATATTTATAATTTTTAGTTATGGTG 15 13 0 TTTTAATTTT 0.870964 -120 CTTATCATAATATCATAATCTTATATTTATAA 15 28 0 TATATAACTT 0.832117 -105 TATATTGACATATATAAATCTTTTAAATTTTT 15 83 0 TATTAAACTT 0.923819 -50 *** **** *** Masking position 11 Map Score: 34.4249 Number of sites scoring better than the average of aligned sites = 2902 Number in coding regions = 1891 Number in noncoding regions = 1011 Number of orfs with sites within 600 bp upstream = 621 Fraction of orfs with sites within 600 bp upstream = 0.099743 Motif number 2 TTTTGTAGGGATTTTTAAAAATGAGTATCT 1 69 0 ATTTTTAAAA 0.862184 -171 CTACAAAACAATTTTTAAAATGCGTAATTT 1 91 1 ATTTTTAAAA 0.862184 -149 AATGCGTAATTTTTTTGTTAAAAGAAAAAT 1 109 1 TTTTTTGTTA 0.735881 -131 TATATATTAAAGTTTTAAAAACTAACCTTA 1 186 1 AGTTTTAAAA 0.626812 -54 AAAGTCCTATTATATTATTAATTGGTGTGC 4 39 1 TATATTATTA 0.68847 -262 ACCTAAAAGATTTTTTATTATGTAATGAAA 6 31 1 TTTTTTATTA 0.915764 -62 TTGTTTTGAGTATTTTAAAACCTTAATGGT 6 60 0 TATTTTAAAA 0.751183 -33 TAATTTTTTATAATACTTTTTGG 7 4 1 TTTTTTATAA 0.943528 -27 ATACGTTTTGTTTTTTGTAAATAAATAGCA 8 17 1 TTTTTTGTAA 0.810694 -186 ATAGCAAAGCTATCTTATAAATCTTTGTTT 8 41 1 TATCTTATAA 0.695656 -162 TCATCAGCATAATTTTGTAAGATATAAGTA 8 70 1 AATTTTGTAA 0.77537 -133 GGCAATATATATTTTTATAAT 9 2 0 ATTTTTATAA 0.955701 -65 TGCCAAAGTAATTATTATTAATCCTACAAA 9 28 1 ATTATTATTA 0.820455 -39 CAGTGAGAAAATTATTATAAAAAGATAAAA 10 83 1 ATTATTATAA 0.87537 -37 AAATATAAGAATTTTTATTATAATTCCATA 11 22 1 ATTTTTATTA 0.933492 -100 ATAATCATTTTATTTTATTATGGATTATCA 11 63 0 TATTTTATTA 0.871594 -59 AAGTGAAGGGAATATTATAATCATTTTATT 11 79 0 AATATTATAA 0.814307 -43 TTTGACGCCTATTCTTATAATTCAAGACAT 12 187 0 ATTCTTATAA 0.82537 -114 TACTTTGATTTGTTTTATTAGATTATGTTA 12 234 1 TGTTTTATTA 0.744816 -67 TATTTATTGAAATATTATTAGAAAGCTATT 13 58 1 AATATTATTA 0.740463 -63 TTCCTAAGTTTATTTTATTACCTATTATTT 14 23 1 TATTTTATTA 0.871594 -64 TACATTTAATATTTTTAAAATTTGTGGTGA 14 63 1 ATTTTTAAAA 0.862184 -24 ATTTACAGAGATTTTTATAAGGTGTTAAT 15 114 1 ATTTTTATAA 0.955701 -19 ********** Masking position 5 Map Score: 25.5899 Number of sites scoring better than the average of aligned sites = 1558 Number in coding regions = 1068 Number in noncoding regions = 490 Number of orfs with sites within 600 bp upstream = 388 Fraction of orfs with sites within 600 bp upstream = 0.0623193 Motif number 3 TCTACGCACCACCACAAACTATAT 4 4 1 ACGCACCCCA 0.856157 -297 CCCAACCCCCCGGCCTAGCCATGCACACCAA 4 60 0 CGGCCTACCA 0.865059 -241 GTTACAGGGGACGCCCAACCCCCCGGCCTAG 4 73 0 ACGCCCACCC 0.964355 -228 CCCAAGTTTTCGGCCCCCGCATAAGGGCGAT 4 109 0 CGGCCCCGCA 0.919233 -192 ACTGGAGGACATGCCGCCCCCAAGTTTTCGG 4 127 0 ATGCCGCCCC 0.988722 -174 TGCTCCCCCACCGCCGAGCCCCACGGGACGA 4 187 0 CCGCCGACCC 0.982203 -114 CCTACAGGAGATGCTCCCCCACCGCCGAGCC 4 198 0 ATGCTCCCCA 0.904593 -103 CCCCCTTTACCTGCCGAACCCCGCCAGGCCC 4 239 1 CTGCCGACCC 0.972078 -62 GTCCTGCCTACCGTTGCTCCCTTCCGGGCCT 4 264 0 CCGTTGCCCC 0.736378 -37 CAAATCCCGGAGGCCGCACCACTGGCTTCAA 12 24 0 AGGCCGCCCA 0.992038 -277 ACACACGGGCCTGCCACGCCCGGACCCCGGG 12 57 0 CTGCCACCCC 0.96516 -244 GTGTGTTACCAGGCTACACCAAGGCCGCTCC 12 82 1 AGGCTACCCA 0.862901 -219 GGCTACACCAAGGCCGCTCCATTGCAAGCAA 12 93 1 AGGCCGCCCA 0.992041 -208 ******* *** Masking position 10 Map Score: 16.3166 Number of sites scoring better than the average of aligned sites = 87 Number in coding regions = 61 Number in noncoding regions = 26 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555 Motif number 4 TATCATAAACTTTATATTTTATGCCAACAC 1 17 1 TTTATATTTT 0.955746 -223 CCAACACTAATTTATTTTTTTAAATTAATA 1 40 1 TTTATTTTTT 0.866777 -200 CATAACAAACTTTATATATTAAAGTTTTAA 1 174 1 TTTATATATT 0.940582 -66 AATAGGACTTTTTATATATAGTTTGTGGTG 4 20 0 TTTATATATA 0.855314 -281 AATAGCATTTATATTGTTTTGAGTATT 6 76 0 TTTATATTGT 0.927444 -17 GATATAAGTATTTATATATTTACAGTTATT 8 90 1 TTTATATATT 0.940582 -113 AACCGAAAGGTTTATATAGAATTTCATTAA 8 143 1 TTTATATAGA 0.787518 -60 ACTTTGGCAATATATATTTTTATAAT 9 7 0 TATATATTTT 0.60684 -60 AACCGAAAGGTTTATATAGAACTTCAACGG 10 42 1 TTTATATAGA 0.787518 -78 CTCCGTTTATTTTATCTTTTTATAATAATT 10 92 0 TTTATCTTTT 0.74561 -28 ACATAAAATTTAAATATAAGAATTTTTA 11 9 1 TTTAAATATA 0.456659 -113 AAAAATTATTTTTATTTTGACGCCTATTCT 12 202 0 TTTATTTTGA 0.605662 -99 AAAATAATTTTTTATACTTTGATTTGTTTT 12 220 1 TTTATACTTT 0.707859 -81 AAATAAAAATTTTATTTTGTTCATAAATCT 13 33 0 TTTATTTTGT 0.793818 -88 AAATAAAATTTTTATTTATTGAAATATTAT 13 46 1 TTTATTTATT 0.826987 -75 AAAATTACATTTAATATTTTTAAAATTTGT 14 58 1 TTAATATTTT 0.607146 -29 TAATCTTATATTTATAATTTTTAGTTATGG 15 15 0 TTTATAATTT 0.620468 -118 ATATAAATCTTTTAAATTTTTAGTTACTAT 15 74 0 TTTAAATTTT 0.74245 -59 ATTTAAAAGATTTATATATGTCAATATATT 15 87 1 TTTATATATG 0.69826 -46 ********** Masking position 1 Map Score: 17.6488 Number of sites scoring better than the average of aligned sites = 1296 Number in coding regions = 884 Number in noncoding regions = 412 Number of orfs with sites within 600 bp upstream = 339 Fraction of orfs with sites within 600 bp upstream = 0.0544491 Motif number 5 AAGGACTGAATTTTTCTTTTAACAAAAAAATT 1 116 0 TTTCTTTTAA 0.952843 -124 AGTTTTAAAAACTAACCTTAAATTATAATGAT 1 196 1 ACTCCTTAAA 0.798606 -44 CTCCTAATTCTTTTACTTTAAATTTCTGAAGT 2 11 1 TTTCTTTAAA 0.952314 -33 GCTTTCTCACCTTTAAGTGTTT 3 7 0 TCTCCTTTAA 0.965734 -16 ATCTTTTAGGTTTAGCCTTAAAATCTTAACT 6 10 0 TTTCCTTAAA 0.955784 -83 CTCCGTTTATTTTATCTTTTTATAATAATTTT 10 90 0 TTTCTTTTTA 0.739796 -30 ATTTCCTATTTCTCACTTTTAATAGCTTTCTA 13 76 0 TCTCTTTTAA 0.962982 -45 TCTTTCACCTTAAATAATTACCTA 13 107 0 TTTCCTTAAA 0.955784 -14 TATTACCTATTATTTCTTTAAAAATTACATTT 14 38 1 TATCTTTAAA 0.832912 -49 TGATAAGGCATCTTCCTTTTAATAGTAACTAA 15 53 1 TCTCTTTTAA 0.962982 -80 *** ******* Masking position 8 Map Score: 9.56129 Number of sites scoring better than the average of aligned sites = 408 Number in coding regions = 364 Number in noncoding regions = 44 Number of orfs with sites within 600 bp upstream = 49 Fraction of orfs with sites within 600 bp upstream = 0.00787022 Motif number 6 TACTATCACCAACTTCAGAAA 2 33 0 ACTATCACCA 0.958161 -11 AATATCACCAAAAAAGATAT 5 40 0 AATATCACCA 0.975026 -10 AATTTCACCAAAAAGTATTA 7 21 0 AATTTCACCA 0.975026 -10 AGATTCACCATTTGAAATTT 9 57 0 AGATTCACCA 0.912262 -10 AATATCACCGGTAAATTTAA 11 112 0 AATATCACCG 0.934536 -10 AGTTTCACCACAAATTTTAA 14 77 0 AGTTTCACCA 0.976823 -10 ********** Masking position 5 Map Score: 5.60422 Number of sites scoring better than the average of aligned sites = 67 Number in coding regions = 39 Number in noncoding regions = 28 Number of orfs with sites within 600 bp upstream = 36 Fraction of orfs with sites within 600 bp upstream = 0.0057822 Motif number 7 GGTGTGCATGGCTAGGCCGGGGGGTTGGGC 4 62 1 GCTAGGCCGG 0.993746 -239 GCCGAACCCCGCCAGGCCCGGAAGGGAGCA 4 251 1 GCCAGGCCCG 0.995948 -50 AGGGAGCAACGGTAGGCAGGACGTCGGCGC 4 273 1 GGTAGGCAGG 0.975605 -28 GTCCGGGCGTGGCAGGCCCGTGTGTTACCA 12 63 1 GGCAGGCCCG 0.995948 -238 ********** Masking position 4 Map Score: 2.96325 Number of sites scoring better than the average of aligned sites = 5 Number in coding regions = 0 Number in noncoding regions = 5 Number of orfs with sites within 600 bp upstream = 4 Fraction of orfs with sites within 600 bp upstream = 0.000642467 Motif number 8 TAATTTAAGGTTAGTTTTTAAAACTTTAAT 1 191 0 TTAGTTTTTA 0.763615 -49 AAAAAATCTTTTAGGTTTAGCCTTAAAATC 6 17 0 TTAGGTTTAG 0.957222 -76 ATGAAACCATTAAGGTTTTAAAATACTCAA 6 55 1 TAAGGTTTTA 0.837931 -38 ATATAAACCTTTCGGTTTTGTGTAAAGTTG 8 130 0 TTCGGTTTTG 0.984156 -73 ATATAAACCTTTCGGTTTTGTTCATATTTG 10 29 0 TTCGGTTTTG 0.984156 -91 ATAAATACTTTTCGGTTTTATTGTATTAAA 12 146 1 TTCGGTTTTA 0.96782 -155 TTTCTTATTTTTAGGTTAAGATTTATGAAC 13 15 1 TTAGGTTAAG 0.822871 -106 ********** Masking position 6 Map Score: 3.94037 Number of sites scoring better than the average of aligned sites = 116 Number in coding regions = 87 Number in noncoding regions = 29 Number of orfs with sites within 600 bp upstream = 36 Fraction of orfs with sites within 600 bp upstream = 0.0057822 Motif number 9 ATCTATTAATTTAAAAAAATAAATTAGTGT 1 43 0 TTAAAAAAAT 0.778953 -197 GCCAAGTTTGGTATGAAAATAAGGACTGAA 1 138 0 GTATGAAAAT 0.83898 -102 GAAATTTAAAGTAAAAGAATTAGGAG 2 7 0 GTAAAAGAAT 0.654355 -37 TTTGTTTTTTGTAAATAAATAGCAAAGCTA 8 23 1 GTAAATAAAT 0.892784 -180 ATCAATAACTGTAAATATATAAATACTTAT 8 93 0 GTAAATATAT 0.854255 -110 ACCTTATTCGGTATGTATATGTTAATGAAA 8 164 0 GTATGTATAT 0.672903 -39 ATTATAAAAATATATATTGCCAA 9 4 1 ATAAAAATAT 0.569332 -63 TTGTGTATAATTATTTCACAAATA 10 5 1 GTATAATTAT 0.446394 -115 ATTATCTCCAGTGAGAAAATTATTATAAAA 10 75 1 GTGAGAAAAT 0.409997 -45 ATTCCATATGGTATATAAATGATAATCCAT 11 44 1 GTATATAAAT 0.88122 -78 ACAAATCAAAGTATAAAAAATTATTTTTAT 12 217 0 GTATAAAAAA 0.516936 -84 GAAATAATAGGTAATAAAATAAACTTAGGA 14 24 0 GTAATAAAAT 0.595017 -63 ACCACAAATTTTAAAAATATTAAATGTAAT 14 61 0 TTAAAAATAT 0.713852 -26 TAACTAAAAATTATAAATATAAGATTATGA 15 18 1 TTATAAATAT 0.686833 -115 ATATATTGACATATATAAATCTTTTAAATT 15 86 0 ATATATAAAT 0.478776 -47 AAAAATCTCTGTAAATATATTGACATATAT 15 100 0 GTAAATATAT 0.854255 -33 ATTAACACCTTATAAAAATCTCTGTAAAT 15 114 0 TTATAAAAAT 0.758701 -19 ********** Masking position 2 Map Score: 6.6324 Number of sites scoring better than the average of aligned sites = 635 Number in coding regions = 473 Number in noncoding regions = 162 Number of orfs with sites within 600 bp upstream = 161 Fraction of orfs with sites within 600 bp upstream = 0.0258593 Motif number 10 ATCATAAACTTTATATTTTATGCCAACACT 1 18 1 TTATATTTTA 0.884339 -222 ATAACAAACTTTATATATTAAAGTTTTAAA 1 175 1 TTATATATTA 0.739346 -65 ATAGGACTTTTTATATATAGTTTGTGGTGG 4 19 0 TTATATATAG 0.582528 -282 ATATAAATACTTATATCTTACAAAATTATG 8 77 0 TTATATCTTA 0.744129 -126 ATATAAGTATTTATATATTTACAGTTATTG 8 91 1 TTATATATTT 0.690237 -112 GTTAATGAAATTCTATATAAACCTTTCGGT 8 144 0 TTCTATATAA 0.67241 -59 ACCGTTGAAGTTCTATATAAACCTTTCGGT 10 43 0 TTCTATATAA 0.67241 -77 ATAAAAATTCTTATATTTAAATTTTATGT 11 10 0 TTATATTTAA 0.742472 -112 ATTATAATCATTTTATTTTATTATGGATTA 11 66 0 TTTTATTTTA 0.563902 -56 TCTTTAAAAATTACATTTAATATTTTTAAA 14 52 1 TTACATTTAA 0.636836 -35 TATCATAATCTTATATTTATAATTTTTAGT 15 20 0 TTATATTTAT 0.724762 -113 ********** Masking position 5 Map Score: 4.10936 Number of sites scoring better than the average of aligned sites = 334 Number in coding regions = 204 Number in noncoding regions = 130 Number of orfs with sites within 600 bp upstream = 120 Fraction of orfs with sites within 600 bp upstream = 0.019274 Motif number 11 AAAATATAAAGTTTATGATAGGGCAT 1 7 0 GTTTATGATA 0.923845 -233 ATATTGTTTTGAGTATTTTAAAACCTTAAT 6 63 0 GAGTATTTTA 0.863139 -30 TATTCGGTATGTATATGTTAATGAAATTCT 8 160 0 GTATATGTTA 0.827622 -43 AAATCCCTCCGTTTATTTTATCTTTTTATA 10 98 0 GTTTATTTTA 0.900397 -22 AAAATAAAATGATTATAATATTCCCTTCAC 11 77 1 GATTATAATA 0.696977 -45 TAGTAGTTCTGAGTATGTTATTGTTGCTTG 12 117 0 GAGTATGTTA 0.941637 -184 TGTTTTATTAGATTATGTTAGATATTGTGA 12 244 1 GATTATGTTA 0.966082 -57 CTTTTCCTAAGTTTATTTTATTACCTATTA 14 20 1 GTTTATTTTA 0.900397 -67 ATAAATATAAGATTATGATATTATGATAAG 15 30 1 GATTATGATA 0.937239 -103 ********** Masking position 5 Map Score: 8.11825 Number of sites scoring better than the average of aligned sites = 127 Number in coding regions = 109 Number in noncoding regions = 18 Number of orfs with sites within 600 bp upstream = 20 Fraction of orfs with sites within 600 bp upstream = 0.00321234 Motif number 12 GGGGGGTTGGGCGTCCCCTGTAACCCGAAA 4 80 1 GCGTCCCCTG 0.985007 -221 CCCCAAGTTTTCGGCCCCCGCATAAGGGCG 4 111 0 TCGGCCCCCG 0.996048 -190 TGGAGGACATGCCGCCCCCAAGTTTTCGGC 4 126 0 GCCGCCCCCA 0.953293 -175 CGATGAGGTCTCGTCCCGTGGGGCTCGGCG 4 177 1 TCGTCCCGTG 0.869894 -124 AGCCAGTGGTGCGGCCTCCGGGATTTGAAC 12 28 1 GCGGCCTCCG 0.988891 -273 CCTGCCACGCCCGGACCCCGGGTTCAAATC 12 49 0 CCGGACCCCG 0.970442 -252 ********** Masking position 6 Map Score: 2.91846 Number of sites scoring better than the average of aligned sites = 13 Number in coding regions = 3 Number in noncoding regions = 10 Number of orfs with sites within 600 bp upstream = 11 Fraction of orfs with sites within 600 bp upstream = 0.00176678 Motif number 13 ********** No masking Map Score: -4.31056e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: -4.31056e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: -4.31056e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0