AlignACE version 2.2 July 7, 1998 alignACE -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -icpxR6_mtub_opreg_300.orf -g0.656 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.656 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 Rv0488 300 hypothetical protein Rv0488 #2 gpm 156 gpm #3 senX3 173 senX3 #4 regX3 227 regX3 #5 tcrA 56 tcrA #6 phoP 141 phoP #7 phoR 44 phoR #8 Rv0903c 130 hypothetical protein Rv0903c #9 accD3 26 accD3 #10 Rv0981 300 hypothetical protein Rv0981 #11 Rv0983 43 hypothetical protein Rv0983 #12 Rv1033c 181 hypothetical protein Rv1033c #13 Rv1034c 67 hypothetical protein Rv1034c #14 Rv1035c 33 hypothetical protein Rv1035c #15 Rv1036c 110 hypothetical protein Rv1036c #16 Rv1037c 26 hypothetical protein Rv1037c #17 Rv1038c 145 hypothetical protein Rv1038c #18 PPE 76 PPE #19 PE 300 PE #20 sigE 262 sigE #21 Rv1222 157 hypothetical protein Rv1222 #22 mtrB 49 mtrB #23 mtrA 69 mtrA #24 tmk 96 tmk #25 sahH 104 sahH #26 Rv3252c 108 hypothetical protein Rv3252c #27 Rv3253c 90 hypothetical protein Rv3253c #28 Rv3764c 70 hypothetical protein Rv3764c #29 Rv3765c 300 hypothetical protein Rv3765c Motif number 1 CTCTGCATCGTCGTCGGGCTCGACCTAACCGC 1 36 0 TGTCGGGCCG 0.745478 -265 TCCTTCTCATCGCGCTGCGCGCTCTGCATCGT 1 57 0 CCGCTGCGGC 0.962079 -244 CTCTGCATCGTCGTCGGGCTCGACCTAACCGC 1 94 0 TGTCGGGCCG 0.745478 -207 TATTTCTCATCGCGCTGCGCGCTCTGCATCGT 1 115 0 CCGCTGCGGC 0.962079 -186 GAGGTCAAGACGCCCGCCGGTGATGGGCTGGT 1 156 1 CCCCGCCGTG 0.486814 -145 TGATGGGCTGGTGGCGCTCACCCCGTTCCGGA 1 176 1 GGGCGCTCCC 0.59014 -125 ACCGCCGAGGTGGTCGGCACCGTAACGGCCGG 2 48 0 TGTCGGCACG 0.802085 -109 GCGGTATGAACGCGCTGCGCAGCGGACCGAGG 2 75 1 CCGCTGCGAG 0.810049 -82 GCAAGTCTCTCACGCACTCCCGCACTCCTCAT 2 131 0 CCGCACTCCG 0.731889 -26 TTTTGGCCTTGCCGCGCTAGGGCGACGTTCAC 3 131 1 GCGCGCTAGG 0.584022 -43 CCTGCGCCGACGACGATGCAGA 4 1 1 CTGCGCCGCG 0.972345 -227 CTCATCGCTACGCTCTGCATCGTCGTCGGCGC 4 14 0 CCTCTGCACG 0.937155 -214 TCATCAGCGCCACTCTCCCCCGCAAGCGGGTG 4 56 0 CCTCTCCCCG 0.975256 -172 GCGCTGATGACCTGCGCCGACGACGATGCAGA 4 78 1 CTGCGCCGCG 0.972345 -150 CTCATCGCTACGCTCTGCATCGTCGTCGGCGC 4 91 0 CCTCTGCACG 0.937155 -137 TCATCAGCGCCACTCTCCCCCGCAAGCGGGTG 4 133 0 CCTCTCCCCG 0.975256 -95 GCGCTGATGACCTGCGCCGACGACGATGCAGA 4 155 1 CTGCGCCGCG 0.972345 -73 CTCATCGCTACGCTCTGCATCGTCGTCGGCGC 4 168 0 CCTCTGCACG 0.937155 -60 CAGCGCCACTCTCCCCCGCAAGCGGGTG 4 210 0 CCTCTCCCCG 0.975256 -18 ATCTGTCTACCTCGCTGTGACGGTGTGCGGCT 5 23 1 CCGCTGTGCG 0.960894 -34 GTGACGGTGTGCGGCTCCGACGGTAGGG 5 39 1 GGGCTCCGCG 0.887315 -18 GTGTATTCACGGCGCGCCGTGGATTGAGCGGC 6 18 1 GCGCGCCGGG 0.973687 -124 CGCCGTGGATTGAGCGGCAACGGTCCAAGCTG 6 32 1 TAGCGGCACG 0.713855 -110 AGTCTGCTAACAGTCTGCCAGGAATCGCCAAA 6 65 0 CGTCTGCCGG 0.888832 -77 TGCCGCGTTCTCCTCGGGCTGCCGATCCGATT 7 23 0 TCTCGGGCGC 0.620163 -22 CCCGCGCGCACCCCGCGAGCAG 8 1 1 CCGCGCGCCC 0.68106 -130 ACTCTGTGTCTGCTCGCCCAGCACGCGACCCG 8 68 1 TCTCGCCCGC 0.856527 -63 CCCGGCGGCTCACCCTCCCACCCTGCTGGACG 8 96 1 CCCCTCCCCC 0.861105 -35 GCGGTTTGTGCCTGCGCCCAGGCGTGGAACGG 10 39 0 CTGCGCCCGG 0.92955 -262 GCAGGCGAAACCCGCGCGGACGAGAACTCTTC 10 131 1 CCGCGCGGCG 0.738834 -170 TGGCCTGAGAGGCGCGCCGTGGTATGCGGGTT 10 255 0 GCGCGCCGGG 0.973687 -46 GCCAGTCTCAGGCGCTGCGACGACACTG 10 283 1 GCGCTGCGCG 0.974039 -18 GAGATCCGCTTTCTCACCGCCGAAGCCCGACA 12 45 1 TCTCACCGCG 0.689378 -137 CCCGACATCCCGCCCGGTCACCTTTTCAGGCC 12 70 1 CCCCGGTCCC 0.832507 -112 TTTGCCGCATTGCGCTGGACGGGTCG 14 18 1 TCGCTGGAGG 0.431897 -16 TGGCTTAAGGCCCGCGCCGTCAATTACAACGT 15 14 1 CCGCGCCGCA 0.83441 -97 CACCAACCGGTGTGCGGCCACGTTGTAATTGA 15 33 0 TTGCGGCCCG 0.927065 -78 TCCTCCTGAGTCGTCGGGCCGGG 16 2 0 TGTCGGGCGG 0.569164 -25 ACCTGTCCGCCACGCGGCCACCACCGCGCCGA 17 69 1 CCGCGGCCCC 0.993916 -77 CTAGCGGCTGTGATCGGCGCGGTGGTGGCCGC 17 82 0 TATCGGCGGG 0.686706 -64 GGCAGACGTACGGGCGGCCACGCTCAACCAAC 18 13 1 CGGCGGCCCG 0.992432 -64 ACAAATGAGACGCGCGGCGCGCGGATTCTAGG 19 38 0 CCGCGGCGGC 0.9882 -263 CGTCCCATGCCTTTCGGTCGCGACTGTGGAGG 19 174 1 CTTCGGTCCG 0.777022 -127 CAAACACACAGGGTCGGCCCGGGGTGCTAGCG 19 248 1 GGTCGGCCGG 0.869904 -53 GCCCGGGGTGCTAGCGGCCGGCAGGTTTCACA 19 264 1 CAGCGGCCGC 0.860543 -37 ATGGACGGCACCCCCGGACACGACGAC 20 6 0 CCCCGGACCG 0.765054 -257 CAATTGGACATACGCTGCGGGCATGGACGGCA 20 28 0 TCGCTGCGGC 0.87171 -235 ATTGGCGACGCCGTCGGGCAGGCGCGCCTGGT 20 56 1 CGTCGGGCGG 0.829129 -207 TCCAGCTCGGTGCTCGGCCGGCGTTCGAACCA 20 84 0 TCTCGGCCGC 0.897323 -179 GTACCCGACACGCCCGGCGTGCCGGACGCGAC 20 127 1 CCCCGGCGGC 0.938927 -136 CATACCGTTACCTGCGCTGTCCAGGGAATATC 20 176 0 CTGCGCTGCC 0.698698 -87 CGAACCGACGCGCTCGGCGGCCGTTGAGTAGT 21 11 0 CCTCGGCGCC 0.987981 -147 GATTGGCAACCATGCGGTAGCCGAACCGACGC 21 32 0 CTGCGGTACC 0.435739 -126 GCATGGTTGCCAATCGGTCCCGAATCCTGGGG 21 49 1 CATCGGTCCG 0.725735 -109 TGCCGGAAAACCATCGCCAGCCGGTAAAACCC 21 78 0 CATCGCCACC 0.515844 -80 AATGTAGCGCGGCGCGGTGCCGGAAAACCATC 21 95 0 GCGCGGTGCG 0.953589 -63 TCCGCGCCGGCGACGATGCAGA 22 1 1 TCGCGCCGCG 0.988782 -49 AGCATCGCTGCGCTCTGCATCGTCGCCGGCGC 22 14 0 CCTCTGCACG 0.937155 -36 GCGATGCTAAGGAGCGGCGCCG 22 38 1 GAGCGGCGCG 0.912086 -12 GTGCCTCCCACCCGCGAGCAGACGCA 24 5 1 CCCCACCCCG 0.751218 -92 GGCGCGGCCCTGTCGGTGGCGGCGCGAGCAG 24 76 0 CGTCGGTGCG 0.916938 -21 GCAGTCACTGTAGCCGCCGTCGGTCAGCCCCG 25 15 0 TGCCGCCGCG 0.834629 -90 AATTTGTAAATACGCGGCGAAGCTAGT 26 6 0 TCGCGGCGAG 0.790469 -103 CAGTACTGGGTACTCTGCGAGGATGACGGGTC 27 37 0 TCTCTGCGGG 0.887962 -54 GCACCCGTCCTCTCGCACTCGTTGTGACCGC 27 70 0 CCTCGCACCG 0.842925 -21 CAGGTTGTCGTCCTCGCCGTGGTGTGT 28 54 1 TCTCGCCGGG 0.947044 -17 GCCAATTGGTCGCTCTCCGTCGCCGTTGTGGA 29 25 0 CCTCTCCGCG 0.97817 -276 TGCCACGCTTGAGGCAGCGTCCCGGACCAACG 29 56 0 GGGCAGCGCC 0.447195 -245 TGAAGCAAATCCCGCTGCCACGCTTGAGGCAG 29 71 0 CCGCTGCCCG 0.992384 -230 GGTACCAACATGCGCGCCGACGTGAGTGGGGT 29 130 1 TCGCGCCGCG 0.988913 -171 GGGCCGGATCCGGGCGGTACCCCACTCACGTC 29 148 0 CGGCGGTACC 0.682675 -153 CCGGATCCGGCCCGCTGGCAGGCTCCGAACGT 29 167 1 CCGCTGGCGG 0.916479 -134 GCGGATACTTGACGCTGTGACGCAGCACCGCA 29 259 1 GCGCTGTGCG 0.861538 -42 TACGACACGCTCAACCGAGATGCGGTG 29 284 0 CCGCTCAACG 0.486917 -17 * ******* ** Masking position 5 Map Score: 114.054 Number of sites scoring better than the average of aligned sites = 76057 Number in coding regions = 71157 Number in noncoding regions = 4900 Number of orfs with sites within 600 bp upstream = 1509 Fraction of orfs with sites within 600 bp upstream = 0.242371 Motif number 2 CCGCCCAACTCCTTCTCATCGCGCTGCGC 1 8 0 CCTCCATCGC 0.832575 -293 TCGTCGGGCTCGACCTAACCGCCCAACTCCTT 1 26 0 CGCCAACCGC 0.915653 -275 CCGCCCAACTCCTTCTCATCGCGCTGCGCGCT 1 66 0 CCTCCATCGC 0.832575 -235 TCGTCGGGCTCGACCTAACCGCCCAACTCCTT 1 84 0 CGCCAACCGC 0.915653 -217 AGCGCCACCAGCCCATCACCGGCGGGCGTCTT 1 162 0 GCCACACCGG 0.979685 -139 ATGGGCTGGTGGCGCTCACCCCGTTCCGGACT 1 178 1 GGGCCACCCC 0.739161 -123 GTTACGGTGCCGACCACCTCGGCGGTATGAAC 2 54 1 CGCCCCTCGG 0.722479 -103 AATTCTCCTCGGTCCGCTGCGCAGCGCGTTCA 2 81 0 GGCCCTGCGC 0.695229 -76 CACCATCAGCCGCCGAAACCGCCGGCAGGTGG 3 23 0 CGCGAACCGC 0.869154 -151 CATGCTGTTTGGCAAACAGCGCACCAAAGCAC 3 54 0 GGAACAGCGC 0.649299 -120 AGCGCGGCAAGGCCAAAATCGGACAAGTCACA 3 117 0 GGCAAATCGG 0.805927 -57 GGTGGTGCCCCCACCTCATCGCTACGCTCTGC 4 28 0 CCCCCATCGC 0.941367 -200 GATGAGGTGGGGGCACCACCCGCTTGCGGGGG 4 40 1 GGCACACCCG 0.961 -188 CGTCGGCGCAGGTCATCAGCGCCACTCTCCCC 4 68 0 GGCACAGCGC 0.965704 -160 GGTGGTGCCCCCACCTCATCGCTACGCTCTGC 4 105 0 CCCCCATCGC 0.941367 -123 GATGAGGTGGGGGCACCACCCGCTTGCGGGGG 4 117 1 GGCACACCCG 0.961 -111 CGTCGGCGCAGGTCATCAGCGCCACTCTCCCC 4 145 0 GGCACAGCGC 0.965704 -83 GGTGGTGCCCCCACCTCATCGCTACGCTCTGC 4 182 0 CCCCCATCGC 0.941367 -46 GATGAGGTGGGGGCACCACCCGCTTGCGGGGG 4 194 1 GGCACACCCG 0.961 -34 CTAACAGTCTGCCAGGAATCGCCAAATCAGCT 6 59 0 GCAGAATCGC 0.296697 -83 TGCCGCGTTCTCCTCGGGCTGCCGATC 7 28 0 CGTCCCTCGG 0.446391 -17 CCCGCGCGCACCCCGCGAGCAGACACA 8 6 1 GCCACCCGCG 0.655498 -125 ACACAGAGTCGCACAAAATCGGCGGTTTTGAT 8 33 1 GCCAAATCGG 0.83272 -98 GTGTCTGCTCGCCCAGCACGCGACCCGGCGGC 8 73 1 GCCACACGCG 0.856841 -58 CGACCCGGCGGCTCACCCTCCCACCCTGCTGG 8 93 1 GCCACCTCCC 0.84554 -38 CTGCGCCCAGGCGTGGAACGGCAGGGATCGTC 10 28 0 GCTGAACGGC 0.53099 -273 CCTGGGCGCAGGCACAAACCGCACCAACATTG 10 49 1 GGACAACCGC 0.617699 -252 CACACGATGAGGGCAGAACCCCAGGTGCAGTG 10 96 0 GGCAAACCCC 0.920344 -205 GTGTGTCAGCAGGCGAAACCCGCGCGGACGAG 10 123 1 AGCGAACCCG 0.379621 -178 GAACAAACCCGCATACCACGGCGCGCCTCTCA 10 250 1 GCTACACGGC 0.832212 -51 ACCACGGCGCGCCTCTCAGGCCAGTCTCAGGC 10 264 1 GCTCCAGGCC 0.626035 -37 CCGGTCCACCGGGGGCTCCGTATA 12 3 1 GGCCCCGGGG 0.588994 -179 ACCGGGGGCTCCGTATACCCGGAAACCGAGAT 12 18 1 CCTAACCCGG 0.377644 -164 CACCGCCGAAGCCCGACATCCCGCCCGGTCAC 12 59 1 GCCGCATCCC 0.931525 -123 CAGCGCAATGCGGCAAAACCGCCG 14 3 0 CGCAAACCGC 0.893722 -31 TTACAACGTGGCCGCACACCGGTTGGTGTGTG 15 37 1 GCGCCACCGG 0.772604 -74 TCCGCCACGCGGCCACCACCGCGCCGATCACA 17 74 1 GGCACACCGC 0.985049 -72 ACCACCGCGCCGATCACAGCCGCTAGAACTTC 17 88 1 CGTCCAGCCG 0.650374 -58 TGTTGGTTGAGCGTGGCCGCCCGTACGTCTGC 18 14 0 GCTGCCGCCC 0.569495 -63 GCCGTCATTCGCCTAGAATCCGCGCGCCGCGC 19 27 1 GCTAAATCCG 0.485311 -274 CCCGGGCACCAGATCACACCGCCATGTCAGCC 19 87 1 AGTCCACCGC 0.741296 -214 TAAACGTCGGGCGTCCCATGCCTTTCGGTCGC 19 163 1 GCTCCATGCC 0.582685 -138 ACCTGCCGGCCGCTAGCACCCCGGGCCGACCC 19 258 0 CGTACACCCC 0.84642 -43 CTGCGGGCATGGACGGCACCCCCGGACACGAC 20 14 0 GGCGCACCCC 0.969527 -249 TTCGAACCAGGCGCGCCTGCCCGACGGCGTCG 20 61 0 GCCGCTGCCC 0.490717 -202 AGGCGCGCCTGGTTCGAACGCCGGCCGAGCAC 20 75 1 GGTCAACGCC 0.485619 -188 TTGCGGCTGTACCCGACACGCCCGGCGTGCCG 20 119 1 ACCGCACGCC 0.456944 -144 CTCATATATGGCCCATACGCCGGTACGCGACG 20 232 1 GCCAACGCCG 0.51934 -31 CATCGCCAGCCGGTAAAACCCCAGGATTCGGG 21 67 0 CGTAAACCCC 0.614331 -91 TGGTTTTCCGGCACCGCGCCGCGCTACATTCG 21 97 1 GCCCCGCCGC 0.790742 -61 CCGCCACCTAGCGAGCCACCGGTATCTCGAAT 21 124 0 GCAGCACCGG 0.714909 -34 CGGCGCCGCTCCTTAGCATCGCTGCGCTCTGC 22 28 0 CCTACATCGC 0.793909 -22 CAAAACTGGCGCACCACACGGGCGTTTCTTGC 23 30 0 GCCCCACGGG 0.926697 -40 GTGCCTCCCACCCGCGAGCAGACG 24 3 1 GCTCCACCCG 0.921939 -94 CCGCGAGCAGACGCAAAATCGCCCATTTTCAT 24 22 1 ACCAAATCGC 0.469607 -75 GCGCGAGCAGACGCAAAATCGCCCTTTTCGTC 24 54 0 ACCAAATCGC 0.469607 -43 AGCCGCCGTCGGTCAGCCCCGCAGG 25 4 0 GGCACCCCGC 0.954238 -101 CCCCAAAGAAGGATGAAAGCCCCT 25 91 1 GGTGAAGCCC 0.549172 -14 CTACGCGACCCGTCATCCTCGCAGAGTACCCA 27 31 1 CGCACCTCGC 0.767281 -60 ACACACCACGGCGAGGACGACA 28 59 0 ACCACACGGC 0.635281 -12 GCTGCCTCAAGCGTGGCAGCGGGATTTGCTTC 29 70 1 GCTGCAGCGG 0.834214 -231 GCAGCCCGGTCGCCAGCAGCCGCTACTGGTAC 29 103 1 CGCACAGCCG 0.822567 -198 GTGGGGTACCGCCCGGATCCGGCCCGCTGGCA 29 155 1 GCCGATCCGG 0.392748 -146 CACGTTCGGAGCCTGCCAGCGGGCCGGATCCG 29 168 0 GCTGCAGCGG 0.834773 -133 CTCCGAACGTGCCCCAAATCGGGTTTCATAGC 29 189 1 GCCCAATCGG 0.86534 -112 TGACGCTGTGACGCAGCACCGCATCTCGGTTG 29 268 1 ACCACACCGC 0.895729 -33 ** ** ****** Masking position 10 Map Score: 78.9677 Number of sites scoring better than the average of aligned sites = 63016 Number in coding regions = 58933 Number in noncoding regions = 4083 Number of orfs with sites within 600 bp upstream = 1467 Fraction of orfs with sites within 600 bp upstream = 0.235625 Motif number 3 TTAGGTCGAGCCCGACGACGATGCAGAGCGC 1 40 1 CCCGCGACGA 0.93734 -261 TTAGGTCGAGCCCGACGACGATGCAGAGCGC 1 98 1 CCCGCGACGA 0.93734 -203 GGCAACGAAGCCGACAAACACCTGAAG 1 284 0 GAAGCGACAA 0.713154 -17 CGCCGAGGTGGTCGGCACCGTAACGGCCGGT 2 47 0 GTCGCACCGT 0.668558 -110 AAGCACACCATCAGCCGCCGAAACCGCCGGC 3 29 0 TCAGCGCCGA 0.980194 -145 CCTGCGCCGACGACGATGCAGAGCGT 4 6 1 GCCGCGACGA 0.993139 -222 GATGACCTGCGCCGACGACGATGCAGAGCGT 4 83 1 GCCGCGACGA 0.993139 -145 GATGACCTGCGCCGACGACGATGCAGAGCGT 4 160 1 GCCGCGACGA 0.993139 -68 TGTGACGGTGTGCGGCTCCGACGGTAGGG 5 38 1 TGCGCTCCGA 0.389749 -19 CACCCCGCGAGCAGACACAGAGTCGCACAAA 8 19 1 GCAGCACAGA 0.898268 -112 TGCTGGGCGAGCAGACACAGAGTCGCATCAA 8 60 0 GCAGCACAGA 0.898268 -71 ACGCCTGGGCGCAGGCACAAACCGCACCAAC 10 46 1 GCAGCACAAA 0.724177 -255 CAAGGCCCAGGTCGTCGACAACGATGACGGG 13 29 1 GTCGCGACAA 0.812193 -39 CTGGCTTAAGGCCCGCGCCGTCAATTACAAC 15 13 1 GCCCCGCCGT 0.851201 -98 CACCGCCATGTCAGCCGCCAAGACCTTGTTA 19 103 1 TCAGCGCCAA 0.937707 -198 CCTGCCCGACGGCGTCGCCAATTGGACATAC 20 47 0 GGCGCGCCAA 0.948734 -216 TGGCAACCATGCGGTAGCCGAACCGACGCGC 21 30 0 GCGGAGCCGA 0.722236 -128 TCCGCGCCGGCGACGATGCAGAGCGC 22 6 1 GCCGCGACGA 0.993139 -44 CCACCCGCGAGCAGACGCAAAATCGCCCATT 24 18 1 GCAGCGCAAA 0.944735 -79 GGCGGCGCGAGCAGACGCAAAATCGCCCTTT 24 59 0 GCAGCGCAAA 0.944735 -38 GTCTGCTCGCGCCGCCACCGACAGGGCCGCG 24 74 1 GCCGCACCGA 0.988774 -23 TGCAGTCACTGTAGCCGCCGTCGGTCAGCCC 25 17 0 GTAGCGCCGT 0.883045 -88 TGTCTAGACATAAGACGCAAACTGCTCTATT 26 46 1 TAAGCGCAAA 0.208744 -63 CCGACCAGGAGCCGCAGCCGAAGCGACCAAA 28 22 0 GCCGAGCCGA 0.968761 -49 CGCCGTTGTGGAAGTCGCCGACCCGG 29 6 0 GAAGCGCCGA 0.970713 -295 TTGGTCGCTCTCCGTCGCCGTTGTGGAAGTC 29 21 0 TCCGCGCCGT 0.952546 -280 CGGCCCGCTGGCAGGCTCCGAACGTGCCCCA 29 174 1 GCAGCTCCGA 0.956596 -127 ACACGGCTGAGCAGACGCCATGCGGATCCTA 29 228 0 GCAGCGCCAT 0.957161 -73 **** ****** Masking position 4 Map Score: 48.1428 Number of sites scoring better than the average of aligned sites = 25152 Number in coding regions = 23965 Number in noncoding regions = 1187 Number of orfs with sites within 600 bp upstream = 673 Fraction of orfs with sites within 600 bp upstream = 0.108095 Motif number 4 TGCGCGCTCTGCATCGTCGTCGGGCTCGAC 1 44 0 GCATCGTCGT 0.985676 -257 TGCGCGCTCTGCATCGTCGTCGGGCTCGAC 1 102 0 GCATCGTCGT 0.985676 -199 GTGTTTGTCGGCTTCGTTGCC 1 290 1 GCTTCGTTGC 0.885828 -11 ACTCCCGCACTCCTCATCGTGGACCAAAAT 2 118 0 TCCTCATCGT 0.85172 -39 GCTACGCTCTGCATCGTCGTCGGCGCAGG 4 10 0 GCATCGTCGT 0.985676 -218 TGGTGCCCCCACCTCATCGCTACGCTCTGC 4 28 0 ACCTCATCGC 0.883924 -200 GCTACGCTCTGCATCGTCGTCGGCGCAGGT 4 87 0 GCATCGTCGT 0.985676 -141 TGGTGCCCCCACCTCATCGCTACGCTCTGC 4 105 0 ACCTCATCGC 0.883924 -123 GCTACGCTCTGCATCGTCGTCGGCGCAGGT 4 164 0 GCATCGTCGT 0.985676 -64 TGGTGCCCCCACCTCATCGCTACGCTCTGC 4 182 0 ACCTCATCGC 0.883924 -46 AGCCTATATAGCCTCATCGC 9 17 1 GCCTCATCGC 0.978612 -10 TGGGGTTCTGCCCTCATCGTGTGTCAGCAG 10 105 1 CCCTCATCGT 0.861124 -196 CACAATCCCGTCATCGTTGTCGACGACCTG 13 36 0 TCATCGTTGT 0.714382 -32 CCGGTGTGCGGCCACGTTGTAATTGACGGC 15 29 0 GCCACGTTGT 0.756002 -82 TTGGTGTGTGGCCACGTTGTTATCTGAACG 15 59 1 GCCACGTTGT 0.756002 -52 GTCAAAGTGACCTTCGTCGCGTCCGGCACG 20 144 0 CCTTCGTCGC 0.869421 -119 GCTGCGCTCTGCATCGTCGCCGGCGCGGA 22 10 0 GCATCGTCGC 0.98771 -40 CCGCTCCTTAGCATCGCTGCGCTCTGCATC 22 25 0 GCATCGCTGC 0.85191 -25 ACTAGCTTCGCCGCGTATTTACAA 26 5 1 GCTTCGCCGC 0.91764 -104 CAGGTTGTCGTCCTCGCCGTGGTGTGT 28 54 1 TCCTCGCCGT 0.863702 -17 ********** Masking position 5 Map Score: 39.7985 Number of sites scoring better than the average of aligned sites = 2822 Number in coding regions = 2571 Number in noncoding regions = 251 Number of orfs with sites within 600 bp upstream = 213 Fraction of orfs with sites within 600 bp upstream = 0.0342114 Motif number 5 AACTCCTTCTCATCGCGCTGCGC 1 2 0 CATCGGCGCG 0.675642 -299 TCTGCATCGTCGTCGGGCTCGACCTAACCGCC 1 35 0 CGTCGGCCGA 0.874682 -266 AACTCCTTCTCATCGCGCTGCGCGCTCTGCAT 1 60 0 CATCGGCGCG 0.675642 -241 TCTGCATCGTCGTCGGGCTCGACCTAACCGCC 1 93 0 CGTCGGCCGA 0.874682 -208 TGCTATTTCTCATCGCGCTGCGCGCTCTGCAT 1 118 0 CATCGGCGCG 0.675642 -183 GTTACGGTGCCGACCACCTCGGCGGTATGAAC 2 54 1 CGACCCCCGG 0.82748 -103 GTTTGAGATCCCACCTGCCGGCGGTTTCGGCG 3 13 1 CCACCGCGGC 0.895417 -161 CGCGCTAGGGCGACGTTCACCGGATTTGTAGG 3 143 1 CGACGTCCCG 0.626021 -31 CGCTCTGCATCGTCGTCGGCGCAGG 4 4 0 CGTCGCGCGC 0.932659 -224 GGTGGGGGCACCACCCGCTTGCGGGGGAGAGT 4 45 1 CCACCGCTGC 0.592114 -183 CGCTCTGCATCGTCGTCGGCGCAGGTCATCAG 4 81 0 CGTCGCGCGC 0.932659 -147 GGTGGGGGCACCACCCGCTTGCGGGGGAGAGT 4 122 1 CCACCGCTGC 0.592114 -106 CGCTCTGCATCGTCGTCGGCGCAGGTCATCAG 4 158 0 CGTCGCGCGC 0.932659 -70 GGTGGGGGCACCACCCGCTTGCGGGGGAGAGT 4 199 1 CCACCGCTGC 0.592114 -29 CCCTACCGTCGGAGCCGCACACCGTCAC 5 39 0 CGTCGAGCGC 0.819471 -18 GCCGCGTTCTCCTCGGGCTGCCGATCCGATTA 7 22 0 CCTCGGCGCC 0.91571 -23 GCCCAGCACGCGACCCGGCGGCTCACCCTCCC 8 83 1 CGACCGGGGC 0.967104 -48 GCCTGATTACCGTCCAGCAGGGTGGGAGGGTG 8 106 0 CGTCCGCGGG 0.979751 -25 GAAGAGTTCTCGTCCGCGCGGGTTTCGCCTGC 10 131 0 CGTCCCGGGG 0.877508 -170 AAACAAAACCCGTCCATGGGGCCAATGTGGCT 10 199 1 CGTCCTGGGC 0.895576 -102 CAGTGTCGTCGCAGCGCCTGAGACTGGC 10 283 0 CGTCGAGGCC 0.714836 -18 CGAAGCCCGACATCCCGCCCGGTCACCTTTTC 12 65 1 CATCCGCCGG 0.804992 -117 TCGTTGTCGACGACCTGGGCCTTGTGCTCAAA 13 21 0 CGACCGGCCT 0.368865 -47 CCTCCTGAGTCGTCGGGCCGGG 16 1 0 CGTCGGCGGG 0.977882 -26 GCGGCAGACGTACGGGCGGCCACGCTCAAC 18 9 1 CGTACGGGGC 0.762991 -68 AAACCGTAAACGTCGGGCGTCCCATGCCTTTC 19 157 1 CGTCGGCTCC 0.897463 -144 TGTGTGTTTGCGTACGGCTGCCTGTGGATTGG 19 226 0 CGTACGCGCC 0.731075 -75 GTCGTCGTGTCCGGGGGTGCCGTC 20 3 1 CGTCGGTCGG 0.732902 -260 CCGGGGGTGCCGTCCATGCCCGCAGCGTATGT 20 21 1 CGTCCTGCCG 0.750848 -242 TTGGCGACGCCGTCGGGCAGGCGCGCCTGGTT 20 57 1 CGTCGGCGGC 0.988334 -206 CAGCCGCAAGCGTCCAGCTCGGTGCTCGGCCG 20 96 0 CGTCCGCCGG 0.981598 -167 ACCTTCGTCGCGTCCGGCACGCCGGGCGTGTC 20 133 0 CGTCCGCCGC 0.990327 -130 GGGAATTACCGTCGCGTACCGGCGTATGGGC 20 242 0 CGTCGGTCCG 0.625918 -21 GTAGCCGAACCGACGCGCTCGGCGGCCGTTGA 21 16 0 CGACGGCCGG 0.950283 -142 GAATGTAGCGCGGCGCGGTGCCGGAAAACCAT 21 96 0 CGGCGGGGCC 0.81468 -62 CACCACCTCCTTCCGCCACCTAGCGAG 21 141 0 CCTCCTCGCC 0.603651 -17 CGCTCTGCATCGTCGCCGGCGCGGA 22 4 0 CGTCGCGCGC 0.932633 -46 GTGCCTCCCACCCGCGAGCAGACGC 24 4 1 CCTCCACCGC 0.591288 -93 GCGCCGCCACCGACAGGGCCGCGCC 24 82 1 CGACAGGCGC 0.529184 -15 CTGTAGCCGCCGTCGGTCAGCCCCGCAGG 25 8 0 CGTCGTCGCC 0.868727 -97 ACAACCTGTCCGACCAGGAGCCGCAGCCGAAG 28 30 0 CGACCGGGCC 0.947166 -41 CTTGAGGCAGCGTCCCGGACCAACGCCAATTG 29 49 0 CGTCCGGCCA 0.770826 -252 CGGCTGCTGGCGACCGGGCTGCTGAAGCAAAT 29 93 0 CGACCGGTGC 0.832941 -208 CGCCCGGATCCGGCCCGCTGGCAGGCTCCGAA 29 164 1 CGGCCGCGGC 0.916167 -137 TGGCAGGCTCCGAACGTGCCCCAAATCGGGTT 29 182 1 CGAACTGCCC 0.108686 -119 ***** ** *** Masking position 1 Map Score: 84.3109 Number of sites scoring better than the average of aligned sites = 27765 Number in coding regions = 26119 Number in noncoding regions = 1646 Number of orfs with sites within 600 bp upstream = 930 Fraction of orfs with sites within 600 bp upstream = 0.149374 Motif number 6 GAATTTCTGAGTCCGGAACGGGGTGAGCGC 1 189 0 GTCCGGAACG 0.816597 -112 CCGCCGAGGTGGTCGGCACCGTAACGGCCG 2 49 0 GGTCGGCACC 0.736178 -108 CCGCCGAAACCGCCGGCAGGTGGGATCTCA 3 16 0 CGCCGGCAGG 0.859189 -158 AAGCGGGTGGTGCCCCCACCTCATCGCTAC 4 35 0 TGCCCCCACC 0.898435 -193 AAGCGGGTGGTGCCCCCACCTCATCGCTAC 4 112 0 TGCCCCCACC 0.898435 -116 AAGCGGGTGGTGCCCCCACCTCATCGCTAC 4 189 0 TGCCCCCACC 0.898435 -39 CTGTGACGGTGTGCGGCTCCGACGGTAGGG 5 37 1 GTGCGGCTCC 0.376103 -20 TCTGCTAACAGTCTGCCAGGAATCGCCAAA 6 65 0 GTCTGCCAGG 0.437388 -77 GTGTCTGCTCGCCCAGCACGCGACCCGGCG 8 73 1 GCCCAGCACG 0.827693 -58 CCTGATTACCGTCCAGCAGGGTGGGAGGGT 8 107 0 GTCCAGCAGG 0.881453 -24 CAGGTGCAGTGTGCACCACGTTCCACCAAT 10 77 0 GTGCACCACG 0.552439 -224 ACGAGAACTCTTCCGCCAAGCAGCACAAAT 10 150 1 TTCCGCCAAG 0.425031 -151 GCTGGCTTAAGGCCCGCGCCGTCAATTACA 15 12 1 GGCCCGCGCC 0.730131 -99 CCAACCGGTGTGCGGCCACGTTGTAATTGA 15 33 0 TGCGGCCACG 0.793557 -78 GTCATAACCTGTCCGCCACGCGGCCACCAC 17 63 1 GTCCGCCACG 0.984984 -83 TCCGCCACGCGGCCACCACCGCGCCGATCA 17 74 1 GGCCACCACC 0.941181 -72 CAGACGTACGGGCGGCCACGCTCAACCAAC 18 15 1 GGCGGCCACG 0.926143 -62 GGGTGCTAGCGGCCGGCAGGTTTCACACAC 19 269 1 GGCCGGCAGG 0.981635 -32 CTGCGGGCATGGACGGCACCCCCGGACACG 20 16 0 GGACGGCACC 0.739282 -247 GTGCCGTCCATGCCCGCAGCGTATGTCCAA 20 27 1 TGCCCGCAGC 0.816735 -236 TGGCGACGCCGTCGGGCAGGCGCGCCTGGT 20 58 1 GTCGGGCAGG 0.801009 -205 AGCCGCAAGCGTCCAGCTCGGTGCTCGGCC 20 97 0 GTCCAGCTCG 0.707624 -166 CCTTCGTCGCGTCCGGCACGCCGGGCGTGT 20 134 0 GTCCGGCACG 0.988439 -129 GGCGATGGTTTTCCGGCACCGCGCCGCGCT 21 92 1 TTCCGGCACC 0.944565 -66 CACCACCTCCTTCCGCCACCTAGCGAGCCA 21 138 0 TTCCGCCACC 0.928948 -20 CGTCTGCTCGCGCCGCCACCGACAGGGCCG 24 73 1 CGCCGCCACC 0.889195 -24 CCGTCGGTCAGCCCCGCAGG 25 1 0 GCCCCGCAGG 0.775362 -104 GGTCGGCGACTTCCACAACGGCGACGGAGA 29 14 1 TTCCACAACG 0.186033 -287 ATTGGCGTTGGTCCGGGACGCTGCCTCAAG 29 51 1 GTCCGGGACG 0.789125 -250 GCCCGGATCCGGCCCGCTGGCAGGCTCCGA 29 165 1 GGCCCGCTGG 0.737779 -136 ********** Masking position 7 Map Score: 39.0505 Number of sites scoring better than the average of aligned sites = 19273 Number in coding regions = 18081 Number in noncoding regions = 1192 Number of orfs with sites within 600 bp upstream = 803 Fraction of orfs with sites within 600 bp upstream = 0.128975 Motif number 7 ACACCATCAGCCGCCGAAACCGCCGGCAGG 3 26 0 CCGCCGAAAC 0.962246 -148 CGCCACTCTCCCCCGCAAGCGGGTGGTGCC 4 51 0 CCCCGCAAGC 0.987893 -177 CGCCACTCTCCCCCGCAAGCGGGTGGTGCC 4 128 0 CCCCGCAAGC 0.987893 -100 CGCCACTCTCCCCCGCAAGCGGGTGGTGCC 4 205 0 CCCCGCAAGC 0.987893 -23 CCCGCGCGCACCCCGCGAGCAGACACAGAG 8 11 1 CCCCGCGAGC 0.959473 -120 CGTGTGTCAGCAGGCGAAACCCGCGCGGAC 10 122 1 CAGGCGAAAC 0.648221 -179 CGAGAACTCTTCCGCCAAGCAGCACAAATC 10 151 1 TCCGCCAAGC 0.792142 -150 CGCTTTCTCACCGCCGAAGCCCGACATCCC 12 51 1 CCGCCGAAGC 0.99082 -131 CCAAATAACTCCACGGAAACGGAATACCCC 18 57 1 CCACGGAAAC 0.686867 -20 GATCTGGTGCCCGGGCTAGCACACTTCGGC 19 72 0 CCGGGCTAGC 0.885567 -229 GTAACGCTAACCGGCCAAGCCTCCACAGTC 19 195 0 CCGGCCAAGC 0.988072 -106 TGGACGGCACCCCCGGACACGACGAC 20 7 0 CCCCGGACAC 0.696463 -256 GGTTCGAACGCCGGCCGAGCACCGAGCTGG 20 85 1 CCGGCCGAGC 0.960062 -178 TTGTAAATACGCGGCGAAGCTAGT 26 5 0 GCGGCGAAGC 0.867725 -104 CCAGGAGCCGCAGCCGAAGCGACCAAATTC 28 19 0 CAGCCGAAGC 0.920564 -52 ********** Masking position 10 Map Score: 20.3465 Number of sites scoring better than the average of aligned sites = 3700 Number in coding regions = 3413 Number in noncoding regions = 287 Number of orfs with sites within 600 bp upstream = 262 Fraction of orfs with sites within 600 bp upstream = 0.0420816 Motif number 8 TCATCGCGCTGCGCGCTCTGCATCGTCGTC 1 53 0 GCGCGCTCTG 0.982596 -248 TCATCGCGCTGCGCGCTCTGCATCGTCGTC 1 111 0 GCGCGCTCTG 0.982596 -190 TTTGGCCTTGCCGCGCTAGGGCGACGTTCA 3 132 1 CCGCGCTAGG 0.65023 -42 TGTATTCACGGCGCGCCGTGGATTGAGCGG 6 19 1 GCGCGCCGTG 0.967166 -123 TGCTCGCGGGGTGCGCGCGGG 8 2 0 GTGCGCGCGG 0.875459 -129 CTCTGTGTCTGCTCGCCCAGCACGCGACCC 8 69 1 GCTCGCCCAG 0.847863 -62 AGCAGGCGAAACCCGCGCGGACGAGAACTC 10 130 1 ACCCGCGCGG 0.837714 -171 GGCCTGAGAGGCGCGCCGTGGTATGCGGGT 10 256 0 GCGCGCCGTG 0.967166 -45 AAGCCCGACATCCCGCCCGGTCACCTTTTC 12 67 1 TCCCGCCCGG 0.886535 -115 CTGGCTTAAGGCCCGCGCCGTCAATTACAA 15 13 1 GCCCGCGCCG 0.953098 -98 CCTAGAATCCGCGCGCCGCGCGTCTCATTT 19 38 1 GCGCGCCGCG 0.960514 -263 GCCGAAGTGTGCTAGCCCGGGCACCAGATC 19 72 1 GCTAGCCCGG 0.77943 -229 GGCATGGACGGCACCCCCGGACACGACGAC 20 11 0 GCACCCCCGG 0.764133 -252 CGTCGGGCAGGCGCGCCTGGTTCGAACGCC 20 67 1 GCGCGCCTGG 0.93889 -196 CCAGCTCGGTGCTCGGCCGGCGTTCGAACC 20 85 0 GCTCGGCCGG 0.844076 -178 GTCGCGTCCGGCACGCCGGGCGTGTCGGGT 20 129 0 GCACGCCGGG 0.953474 -134 AGCCGAACCGACGCGCTCGGCGGCCGTTGA 21 16 0 ACGCGCTCGG 0.935414 -142 GATACCGGTGGCTCGCTAGGTGGCGGAAGG 21 130 1 GCTCGCTAGG 0.890359 -28 CTGCATCGTCGCCGGCGCGGA 22 2 0 GCCGGCGCGG 0.618965 -48 CTTAGCATCGCTGCGCTCTGCATCGTCGCC 22 19 0 CTGCGCTCTG 0.275282 -31 TTTTGCGTCTGCTCGCGCCGCCACCGACAG 24 68 1 GCTCGCGCCG 0.917811 -29 AGGCTAAGTAGCCCGCTCGGATCCCTGTGA 25 59 1 GCCCGCTCGG 0.981401 -46 CCCGGATCCGGCCCGCTGGCAGGCTCCGAA 29 166 1 GCCCGCTGGC 0.630356 -135 CCGATTTGGGGCACGTTCGGAGCCTGCCAG 29 181 0 GCACGTTCGG 0.585863 -120 GATCCTATGTGCGCGCTATGAAACCCGATT 29 205 0 GCGCGCTATG 0.877834 -96 ********** Masking position 5 Map Score: 39.9661 Number of sites scoring better than the average of aligned sites = 7036 Number in coding regions = 6461 Number in noncoding regions = 575 Number of orfs with sites within 600 bp upstream = 422 Fraction of orfs with sites within 600 bp upstream = 0.0677803 Motif number 9 CAAACAGCGCACCAAAGCACACCATCAGCC 3 44 0 ACCAAAGCAC 0.874311 -130 CACACACTACGCCACAGCTGTTCGGTTACC 3 91 0 GCCACAGCTG 0.865186 -83 GCCAGGAATCGCCAAATCAGCTTGGACCGT 6 51 0 GCCAAATCAG 0.935027 -91 ACGAGGTTTAGCCACATCAGCCACATTGGC 10 219 0 GCCACATCAG 0.911083 -82 CCACACCCATGCCAGTCCACGC 11 32 1 GCCAGTCCAC 0.90808 -12 ACGAAATTCAGCCAAATAACTCCACGGAAA 18 46 1 GCCAAATAAC 0.748412 -31 TAGCCCGGGCACCAGATCACACCGCCATGT 19 84 1 ACCAGATCAC 0.737923 -217 ACGCTAACCGGCCAAGCCTCCACAGTCGCG 19 192 0 GCCAAGCCTC 0.898068 -109 TTAGCGTTACGCCAATCCACAGGCAGCCGT 19 215 1 GCCAATCCAC 0.952854 -86 TGGTTTCTAAGCCAAAGCTCAGATTGCTCA 20 206 1 GCCAAAGCTC 0.962917 -57 CTCCTCATGAGCCACACCACGTTGGGATTT 26 80 0 GCCACACCAC 0.98305 -29 ATGCCAAACCTCCTCATGAGCC 26 97 0 GCCAAACCTC 0.976877 -12 ********** Masking position 4 Map Score: 9.11681 Number of sites scoring better than the average of aligned sites = 914 Number in coding regions = 808 Number in noncoding regions = 106 Number of orfs with sites within 600 bp upstream = 104 Fraction of orfs with sites within 600 bp upstream = 0.0167041 Motif number 10 GCGCCACTCTCCCCCGCAAGCGGGTGGTGC 4 52 0 CCCCCGCAAG 0.996656 -176 GCGCCACTCTCCCCCGCAAGCGGGTGGTGC 4 129 0 CCCCCGCAAG 0.996656 -99 GCGCCACTCTCCCCCGCAAGCGGGTGGTGC 4 206 0 CCCCCGCAAG 0.996656 -22 CCCGCGCGCACCCCGCGAGCAGACACAGA 8 10 1 ACCCCGCGAG 0.957526 -121 GCGCCGATCACAGCCGCTAGAACTTCAACA 17 94 1 CAGCCGCTAG 0.96337 -52 TGAAACCTGCCGGCCGCTAGCACCCCGGGC 19 264 0 CGGCCGCTAG 0.939126 -37 GTGTCGGGTACAGCCGCAAGCGTCCAGCTC 20 108 0 CAGCCGCAAG 0.983728 -155 GTGCCTCCCACCCGCGAGCAGACGCAAA 24 9 1 CACCCGCGAG 0.987374 -88 CCGTCGGTCAGCCCCGCAGG 25 1 0 GCCCCGCAGG 0.920658 -104 ********** Masking position 5 Map Score: 17.4253 Number of sites scoring better than the average of aligned sites = 421 Number in coding regions = 354 Number in noncoding regions = 67 Number of orfs with sites within 600 bp upstream = 59 Fraction of orfs with sites within 600 bp upstream = 0.00947639 Motif number 11 TGGGCTGGTGGCGCTCACCCCGTTCCGGAC 1 179 1 GCGCTCACCC 0.861528 -122 GCACAGCGGAACGCTAAACCATCACATGCA 1 252 0 ACGCTAAACC 0.828643 -49 ACCGTAACGGCCGGTTCACCAAGGCCGATA 2 32 0 CCGGTTCACC 0.689219 -125 CAGCATGTGAACGGTAACCGAACAGCTGTG 3 79 1 ACGGTAACCG 0.800462 -95 CGCTAGGGCGACGTTCACCGGATTTGTAGG 3 145 1 ACGTTCACCG 0.70471 -29 CATCAGCGCCACTCTCCCCCGCAAGCGGGT 4 57 0 ACTCTCCCCC 0.708099 -171 CATCAGCGCCACTCTCCCCCGCAAGCGGGT 4 134 0 ACTCTCCCCC 0.708099 -94 CAGCGCCACTCTCCCCCGCAAGCGGGT 4 211 0 ACTCTCCCCC 0.708099 -17 ACCGTCGGAGCCGCACACCGTCACAGCGAG 5 33 0 CCGCACACCG 0.861882 -24 TGGACCGTTGCCGCTCAATCCACGGCGCGC 6 29 0 CCGCTCAATC 0.433998 -113 TTGAGCGGCAACGGTCCAAGCTGATTTGGC 6 41 1 ACGGTCCAAG 0.538634 -101 TGTGAAGGTAACGTTCAACCA 6 131 1 ACGTTCAACC 0.742024 -11 CGCGACCCGGCGGCTCACCCTCCCACCCTG 8 91 1 CGGCTCACCC 0.622137 -40 GTCCGAATAAACGGTTACCC 10 1 0 ACGGTTACCC 0.651492 -300 ACGATCCCTGCCGTTCCACGCCTGGGCGCA 10 29 1 CCGTTCCACG 0.738986 -272 CAGGCACAAACCGCACCAACATTGGTGGAA 10 57 1 CCGCACCAAC 0.541654 -244 AGTGTGCACCACGTTCCACCAATGTTGGTG 10 70 0 ACGTTCCACC 0.784342 -231 CACACCCATGCCAGTCCACGC 11 33 1 CCAGTCCACG 0.302245 -11 CCGGTCCACCGGGGGCTCCG 12 1 1 CCGGTCCACC 0.969349 -181 CTCCGTATACCCGGAAACCGAGATCCGCTT 12 26 1 CCGGAAACCG 0.661304 -156 GACATCCCGCCCGGTCACCTTTTCAGGCCG 12 73 1 CCGGTCACCT 0.620511 -109 TACAACGTGGCCGCACACCGGTTGGTGTGT 15 38 1 CCGCACACCG 0.861882 -73 ACGGGCGGCCACGCTCAACCAACAACGAAA 18 22 1 ACGCTCAACC 0.939213 -55 GATTGGCGTAACGCTAACCGGCCAAGCCTC 19 202 0 ACGCTAACCG 0.800489 -99 AGGCAGCCGTACGCAAACACACAGGGTCGG 19 235 1 ACGCAAACAC 0.237669 -66 GCGGGCATGGACGGCACCCCCGGACACGAC 20 14 0 ACGGCACCCC 0.457286 -249 GGCCCATACGCCGGTACGCGACGGTAATTC 20 241 1 CCGGTACGCG 0.376415 -22 CCATCGCCAGCCGGTAAAACCCCAGGATTC 21 70 0 CCGGTAAAAC 0.493097 -88 CGGCGCGGTGCCGGAAAACCATCGCCAGCC 21 88 0 CCGGAAAACC 0.701839 -70 AGGCAGCGTCCCGGACCAACGCCAATTGGT 29 47 0 CCGGACCAAC 0.541654 -254 CCGGATCCGGGCGGTACCCCACTCACGTCG 29 147 0 GCGGTACCCC 0.710683 -154 TACGACACGCTCAACCGAGATGCGGT 29 285 0 ACGCTCAACC 0.939213 -16 ********** Masking position 2 Map Score: 25.9698 Number of sites scoring better than the average of aligned sites = 14145 Number in coding regions = 12987 Number in noncoding regions = 1158 Number of orfs with sites within 600 bp upstream = 784 Fraction of orfs with sites within 600 bp upstream = 0.125924 Motif number 12 CGACCTAACCGCCCAACTCCTTCTCATCGCG 1 17 0 GCCCACTCCT 0.993507 -284 CGACCTAACCGCCCAACTCCTTCTCATCGCG 1 75 0 GCCCACTCCT 0.993507 -226 GGACCAAAATGCCCGAATTCTCCTCGGTCCG 2 97 0 GCCCAATTCT 0.896878 -60 AGCACAAATCGCCCTACTCTTGACCACCAAA 10 171 1 GCCCACTCTT 0.937504 -130 GCTCCCGTATCCTCTCAAGTCCT 12 169 0 TCCCTATCCT 0.76099 -13 CCCGGCCCGACGACTCAGGAGGACA 16 5 1 GCCCACGACT 0.799695 -22 TGCCAATCGGTCCCGAATCCTGGGGTTTTAC 21 56 1 TCCCAATCCT 0.938787 -102 CGGCGCCGCTCCTTAGCATCGCT 22 37 0 GCGCGCTCCT 0.926417 -13 GTGGGGTACCGCCCGGATCCGGCCCGCTGGC 29 155 1 GCCCGATCCG 0.911539 -146 **** ****** Masking position 4 Map Score: 5.27022 Number of sites scoring better than the average of aligned sites = 563 Number in coding regions = 480 Number in noncoding regions = 83 Number of orfs with sites within 600 bp upstream = 61 Fraction of orfs with sites within 600 bp upstream = 0.00979762 Motif number 13 CCGATTTTGTGCGACTCTGTGTCTGCTCGC 8 25 0 GCGACTCTGT 0.945252 -106 CGGTTTTGATGCGACTCTGTGTCTGCTCGC 8 55 1 GCGACTCTGT 0.945252 -76 CGCCCAGCACGCGACCCGGCGGCTCACCCT 8 82 1 GCGACCCGGC 0.927219 -49 CGGTCCACCGGGGGCTCCGTATACCCGGAA 12 12 1 GGGGCTCCGT 0.829017 -170 GTGAGAAAGCGGATCTCGGTTTCCGGGTAT 12 32 0 GGATCTCGGT 0.795245 -150 GCACCCCGGGCCGACCCTGTGTGTTTGCGT 19 245 0 CCGACCCTGT 0.842013 -56 CCGGCCGCTAGCACCCCGGGCCGACCCTGT 19 255 0 GCACCCCGGG 0.662216 -46 TGTCCAATTGGCGACGCCGTCGGGCAGGCG 20 50 1 GCGACGCCGT 0.867802 -213 CCGCAAGCGTCCAGCTCGGTGCTCGGCCGG 20 95 0 CCAGCTCGGT 0.828803 -168 CGAATGTAGCGCGGCGCGGTGCCGGAAAAC 21 99 0 GCGGCGCGGT 0.974667 -59 GGCGCGGCCCTGTCGGTGGCGGC 24 84 0 GCGGCCCTGT 0.980716 -13 TAGCCCGCTCGGATCCCTGTGAGCCCCCAA 25 67 1 GGATCCCTGT 0.741556 -38 GCTTGAGGCAGCGTCCCGGACCAACGCCAA 29 52 0 GCGTCCCGGA 0.874646 -249 ATTTGCTTCAGCAGCCCGGTCGCCAGCAGC 29 93 1 GCAGCCCGGT 0.981879 -208 ACGCAGCACCGCATCTCGGTTGAGCGTGTC 29 278 1 GCATCTCGGT 0.936875 -23 ********** Masking position 5 Map Score: 14.2706 Number of sites scoring better than the average of aligned sites = 4826 Number in coding regions = 4492 Number in noncoding regions = 334 Number of orfs with sites within 600 bp upstream = 305 Fraction of orfs with sites within 600 bp upstream = 0.0489881 Motif number 14 GTAACGGCCGGTTCACCAAGGCCGATACATG 2 28 0 GTTCACCAGG 0.559763 -129 GCGCTGCGCAGCGGACCGAGGAGAATTCGGG 2 86 1 GCGGACCAGG 0.985895 -71 TTGGCAAACAGCGCACCAAAGCACACCATCA 3 47 0 GCGCACCAAG 0.896835 -127 CGTCGCCCTAGCGCGGCAAGGCCAAAATCGG 3 127 0 GCGCGGCAGG 0.90748 -47 TGTATTCACGGCGCGCCGTGGATTGAGCGGC 6 19 1 GCGCGCCTGG 0.955691 -123 CTCTGTGTCTGCTCGCCCAGCACGCGACCCG 8 69 1 GCTCGCCAGC 0.64909 -62 GGTTTCGCCTGCTGACACACGATGAGGGCAG 10 112 0 GCTGACAACG 0.794315 -189 GGCCTGAGAGGCGCGCCGTGGTATGCGGGTT 10 255 0 GCGCGCCTGG 0.955691 -46 CTGCATGTGCGCTTGCACAGGACTTGAGAGG 12 151 1 GCTTGCAAGG 0.734819 -31 TGCGGACAAAGGGGGACATCTC 17 2 1 GCGGACAAGG 0.956862 -144 AATTACCGTCGCGTACCGGCGTATGGGCCAT 20 239 0 GCGTACCGCG 0.709764 -24 CCTCCCACCCGCGAGCAGACGCAAAATCGCC 24 14 1 GCGAGCAACG 0.846948 -83 CGGTGGCGGCGCGAGCAGACGCAAAATCGCC 24 63 0 GCGAGCAACG 0.846948 -34 CCTGCGGGGCTGACCGACGGCGGCTACAG 25 9 1 GCTGACCACG 0.924081 -96 GACTGCAAGAGCGTACCTAGGCTAAGTAGCC 25 41 1 GCGTACCAGG 0.9647 -64 AGGCAGCGTCCCGGACCAACGCCAATTGGTC 29 46 0 CCGGACCACG 0.773503 -255 GTACCAACATGCGCGCCGACGTGAGTGGGGT 29 131 1 GCGCGCCACG 0.990184 -170 GTTTCATAGCGCGCACATAGGATCCGCATGG 29 211 1 GCGCACAAGG 0.972225 -90 ******* *** Masking position 2 Map Score: 25.2231 Number of sites scoring better than the average of aligned sites = 4261 Number in coding regions = 3977 Number in noncoding regions = 284 Number of orfs with sites within 600 bp upstream = 245 Fraction of orfs with sites within 600 bp upstream = 0.0393511 Motif number 15 TTAGGTCGAGCCCGACGACGATGCAGAGCG 1 40 1 CCCGACGACG 0.907053 -261 TTAGGTCGAGCCCGACGACGATGCAGAGCG 1 98 1 CCCGACGACG 0.907053 -203 TGGCGCTCACCCCGTTCCGGACTCAGAAAT 1 187 1 CCCGTTCCGG 0.594183 -114 TACATGGGCGGCCTACGAGGTGG 2 4 0 GCCTACGAGG 0.811919 -153 CGTTCATACCGCCGAGGTGGTCGGCACCGT 2 57 0 GCCGAGGTGG 0.8291 -100 CATTTTGGTCCACGATGAGGAGTGCGGGAG 2 117 1 CACGATGAGG 0.547827 -40 CCTGCGCCGACGACGATGCAGAGCG 4 6 1 GCCGACGACG 0.916969 -222 GATGACCTGCGCCGACGACGATGCAGAGCG 4 83 1 GCCGACGACG 0.916969 -145 GATGACCTGCGCCGACGACGATGCAGAGCG 4 160 1 GCCGACGACG 0.916969 -68 TCCTCGGGCTGCCGATCCGATTAACTACCA 7 15 0 GCCGATCCGA 0.848748 -30 GGATCGGCAGCCCGAGGAGAACGCGGCA 7 27 1 CCCGAGGAGA 0.613878 -18 TCGCCCAGCACGCGACCCGGCGGCTCACCC 8 81 1 CGCGACCCGG 0.810359 -50 CCTGCTGACACACGATGAGGGCAGAACCCC 10 106 0 CACGATGAGG 0.547827 -195 CGAAACCCGCGCGGACGAGAACTCTTCCGC 10 136 1 GCGGACGAGA 0.624884 -165 CGTCCATGGGGCCAATGTGGCTGATGTGGC 10 209 1 GCCAATGTGG 0.510867 -92 CATCGTTGTCGACGACCTGGGCCTTGTGCT 13 25 0 GACGACCTGG 0.61767 -43 ACCCGTCCAGCGCAATGCGGCAAAACCGCC 14 12 0 CGCAATGCGG 0.166497 -22 CCCGGCCCGACGACTCAGGA 16 1 1 CCCGGCCCGA 0.734098 -26 AGCACCCCGGGCCGACCCTGTGTGTTTGCG 19 246 0 GCCGACCCTG 0.648736 -55 AACCAGGCGCGCCTGCCCGACGGCGTCGCC 20 59 0 GCCTGCCCGA 0.189481 -204 GCCCGGCGTGCCGGACGCGACGAAGGTCAC 20 138 1 CCGGACGCGA 0.750731 -125 CCATGCGGTAGCCGAACCGACGCGCTCGGC 21 25 0 GCCGAACCGA 0.557005 -133 CTGCATCGTCGCCGGCGCGGA 22 2 0 GCCGGCGCGG 0.95609 -48 CCAGTTTTGTCCCGATGTGGTGACACC 23 53 1 CCCGATGTGG 0.925193 -17 ATTGTCAAATCCCAACGTGGTGTGGCTCAT 26 74 1 CCCAACGTGG 0.737034 -35 CCTTCGGGTTCCCTACGCGACCCGTCATCC 27 19 1 CCCTACGCGA 0.680284 -72 AGGAGCCGCAGCCGAAGCGACCAAATTCGC 28 17 0 GCCGAAGCGA 0.704231 -54 CGACAACCTGTCCGACCAGGAGCCGCAGCC 28 34 0 TCCGACCAGG 0.587934 -37 TGTGGAAGTCGCCGACCCGG 29 1 0 GCCGACCCGG 0.984225 -300 GCTCTCCGTCGCCGTTGTGGAAGTCGCCGA 29 16 0 GCCGTTGTGG 0.53319 -285 CAACATGCGCGCCGACGTGAGTGGGGTACC 29 135 1 GCCGACGTGA 0.920532 -166 GGGGTACCGCCCGGATCCGGCCCGCTGGCA 29 157 1 CCGGATCCGG 0.441477 -144 CGCTATGAAACCCGATTTGGGGCACGTTCG 29 192 0 CCCGATTTGG 0.319084 -109 ********** Masking position 3 Map Score: 38.3962 Number of sites scoring better than the average of aligned sites = 24729 Number in coding regions = 23235 Number in noncoding regions = 1494 Number of orfs with sites within 600 bp upstream = 888 Fraction of orfs with sites within 600 bp upstream = 0.142628