AlignACE version 2.2 July 7, 1998 alignACE -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -icpxR9_mtub_opreg_300.orf -g0.656 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.656 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 Rv0488 300 hypothetical protein Rv0488 #2 gpm 156 gpm #3 senX3 173 senX3 #4 regX3 227 regX3 #5 tcrA 56 tcrA #6 phoP 141 phoP #7 phoR 44 phoR #8 Rv0903c 130 hypothetical protein Rv0903c #9 accD3 26 accD3 #10 Rv0981 300 hypothetical protein Rv0981 #11 Rv0983 43 hypothetical protein Rv0983 #12 Rv1033c 181 hypothetical protein Rv1033c #13 Rv1034c 67 hypothetical protein Rv1034c #14 Rv1035c 33 hypothetical protein Rv1035c #15 Rv1036c 110 hypothetical protein Rv1036c #16 Rv1037c 26 hypothetical protein Rv1037c #17 Rv1038c 145 hypothetical protein Rv1038c #18 PPE 76 PPE #19 PE 300 PE #20 sigE 262 sigE #21 Rv1222 157 hypothetical protein Rv1222 #22 Rv2723 25 hypothetical protein Rv2723 #23 mtrB 49 mtrB #24 mtrA 69 mtrA #25 tmk 96 tmk #26 sahH 104 sahH #27 Rv3252c 108 hypothetical protein Rv3252c #28 Rv3253c 90 hypothetical protein Rv3253c #29 Rv3764c 70 hypothetical protein Rv3764c #30 Rv3765c 300 hypothetical protein Rv3765c Motif number 1 GCTCTGCATCGTCGTCGGGCTCGACCTAAC 1 39 0 GTCGTCGGGC 0.971321 -262 CTTCTCATCGCGCTGCGCGCTCTGCATCGT 1 57 0 CGCTGCGCGC 0.977305 -244 GCTCTGCATCGTCGTCGGGCTCGACCTAAC 1 97 0 GTCGTCGGGC 0.971321 -204 TTTCTCATCGCGCTGCGCGCTCTGCATCGT 1 115 0 CGCTGCGCGC 0.977305 -186 CCAGCCCATCACCGGCGGGCGTCTTGACCT 1 157 0 ACCGGCGGGC 0.938498 -144 GCCGGTGATGGGCTGGTGGCGCTCACCCCG 1 171 1 GGCTGGTGGC 0.828161 -130 GGTATGAACGCGCTGCGCAGCGGACCGAGG 2 77 1 CGCTGCGCAG 0.854108 -80 TTGAGATCCCACCTGCCGGCGGTTTCGGCG 3 15 1 ACCTGCCGGC 0.617495 -159 TCCGATTTTGGCCTTGCCGCGCTAGGGCGA 3 126 1 GCCTTGCCGC 0.610674 -48 AAATCCGGTGAACGTCGCCCTAGCGCGGCA 3 140 0 AACGTCGCCC 0.575204 -34 CTGCATCGTCGTCGGCGCAGG 4 2 0 GTCGGCGCAG 0.964371 -226 CTGCATCGTCGTCGGCGCAGGTCATCAGCG 4 79 0 GTCGGCGCAG 0.964371 -149 CTGCATCGTCGTCGGCGCAGGTCATCAGCG 4 156 0 GTCGGCGCAG 0.964371 -72 CCCTACCGTCGGAGCCGCACACCG 5 43 0 ACCGTCGGAG 0.580516 -14 CGAGTGTATTCACGGCGCGCCGTGGATTGA 6 15 1 CACGGCGCGC 0.971167 -127 TGCCGCGTTCTCCTCGGGCTGCCGATCCG 7 26 0 CTCCTCGGGC 0.815493 -19 TCTGCTCGCGGGGTGCGCGCGGG 8 4 0 GGGTGCGCGC 0.667004 -127 GCGACTCTGTGTCTGCTCGCGGGGTGCGCG 8 15 0 GTCTGCTCGC 0.956285 -116 GCGACTCTGTGTCTGCTCGCCCAGCACGCG 8 65 1 GTCTGCTCGC 0.956285 -66 AGGGTGAGCCGCCGGGTCGCGTGCTGGGCG 8 82 0 GCCGGGTCGC 0.961924 -49 GCCGTTCCACGCCTGGGCGCAGGCACAAAC 10 38 1 GCCTGGGCGC 0.966177 -263 CGCGGGTTTCGCCTGCTGACACACGATGAG 10 117 0 GCCTGCTGAC 0.657272 -184 AAGAGTTCTCGTCCGCGCGGGTTTCGCCTG 10 132 0 GTCCGCGCGG 0.939853 -169 ACCCGCATACCACGGCGCGCCTCTCAGGCC 10 256 1 CACGGCGCGC 0.971167 -45 CAGTGTCGTCGCAGCGCCTGAGAC 10 287 0 GTCGTCGCAG 0.918759 -14 CCGGTCCACCGGGGGCTCCGTATACC 12 7 1 CACCGGGGGC 0.627584 -175 CGGGATGTCGGGCTTCGGCGGTGAGAAAGC 12 52 0 GGCTTCGGCG 0.72532 -130 CTGAAAAGGTGACCGGGCGGGATGTCGGGC 12 69 0 GACCGGGCGG 0.877042 -113 CGTTGTAATTGACGGCGCGGGCCTTAAGCC 15 15 0 GACGGCGCGG 0.985285 -96 GTCCTCCTGAGTCGTCGGGCCGGG 16 5 0 GTCGTCGGGC 0.971321 -22 CGGTGGTGGCCGCGTGGCGGACAGGTTATG 17 65 0 CGCGTGGCGG 0.922371 -81 AGCGGCTGTGATCGGCGCGGTGGTGGCCGC 17 82 0 ATCGGCGCGG 0.979352 -64 TTGTTGGTTGAGCGTGGCCGCCCGTACGTC 18 17 0 AGCGTGGCCG 0.588377 -60 AAATGAGACGCGCGGCGCGCGGATTCTAGG 19 38 0 CGCGGCGCGC 0.975215 -263 AAGTGTGCTAGCCCGGGCACCAGATCACAC 19 76 1 GCCCGGGCAC 0.833357 -225 ACAAGGTCTTGGCGGCTGACATGGCGGTGT 19 102 0 GGCGGCTGAC 0.87414 -199 AAAAACCGTAAACGTCGGGCGTCCCATGCC 19 155 1 AACGTCGGGC 0.765781 -146 CGACTGTGGAGGCTTGGCCGGTTAGCGTTA 19 194 1 GGCTTGGCCG 0.649132 -107 AACACACAGGGTCGGCCCGGGGTGCTAGCG 19 250 1 GTCGGCCCGG 0.946647 -51 CCGGGGTGCTAGCGGCCGGCAGGTTTCACA 19 266 1 AGCGGCCGGC 0.855609 -35 GTCGTCGTGTCCGGGGGTGCCGT 20 4 1 GTCGTGTCCG 0.534943 -259 ATTGGACATACGCTGCGGGCATGGACGGCA 20 28 0 CGCTGCGGGC 0.928878 -235 AATTGGCGACGCCGTCGGGCAGGCGCGCCT 20 55 1 GCCGTCGGGC 0.953807 -208 GGCGTTCGAACCAGGCGCGCCTGCCCGACG 20 67 0 CCAGGCGCGC 0.564135 -196 CAGCTCGGTGCTCGGCCGGCGTTCGAACCA 20 84 0 CTCGGCCGGC 0.527727 -179 CGGCACGCCGGGCGTGTCGGGTACAGCCGC 20 121 0 GGCGTGTCGG 0.893619 -142 CGACACGCCCGGCGTGCCGGACGCGACGAA 20 132 1 GGCGTGCCGG 0.836152 -131 AACCGACGCGCTCGGCGGCCGTTGAGTAGT 21 11 0 CTCGGCGGCC 0.593723 -147 CTGGGGTTTTACCGGCTGGCGATGGTTTTC 21 75 1 ACCGGCTGGC 0.895767 -83 TCGAATGTAGCGCGGCGCGGTGCCGGAAAA 21 100 0 CGCGGCGCGG 0.983906 -58 TGAGAGGAATCCCGGCTGAC 22 16 1 CCCGGCTGAC 0.661278 -10 CTGCATCGTCGCCGGCGCGGA 23 2 0 GCCGGCGCGG 0.951782 -48 GATGCTAAGGAGCGGCGCCG 23 40 1 AGCGGCGCCG 0.929335 -10 GCGATTTTGCGTCTGCTCGCGGGTGGGAGG 25 14 0 GTCTGCTCGC 0.956285 -83 GCGATTTTGCGTCTGCTCGCGCCGCCACCG 25 64 1 GTCTGCTCGC 0.956285 -33 GGCGCGGCCCTGTCGGTGGCGGCGCG 25 81 0 GCCCTGTCGG 0.671982 -16 AGGCTAAGTAGCCCGCTCGGATCCCTGTGA 26 59 1 GCCCGCTCGG 0.945427 -46 ACTAGCTTCGCCGCGTATTTACA 27 4 1 AGCTTCGCCG 0.573544 -105 CTGCGAGGATGACGGGTCGCGTAGGGAACC 28 25 0 GACGGGTCGC 0.888259 -66 GCGACCCGTCATCCTCGCAGAGTACCCAGT 28 35 1 ATCCTCGCAG 0.463695 -56 GCACCCGTCCTCTCGCACTCGTTGTG 28 75 0 GTCCTCTCGC 0.881375 -16 ACAGGTTGTCGTCCTCGCCGTGGTGTGT 29 53 1 GTCCTCGCCG 0.802491 -18 CGCTTGAGGCAGCGTCCCGGACCAACGCCA 30 53 0 AGCGTCCCGG 0.787675 -248 CGCTGCCTCAAGCGTGGCAGCGGGATTTGC 30 69 1 AGCGTGGCAG 0.559248 -232 TACCAGTAGCGGCTGCTGGCGACCGGGCTG 30 104 0 GGCTGCTGGC 0.935505 -197 CCCCACTCACGTCGGCGCGCATGTTGGTAC 30 131 0 GTCGGCGCGC 0.975677 -170 AGCGGGCCGGATCCGGGCGGTACCCCACTC 30 153 0 ATCCGGGCGG 0.833232 -148 CCCGGATCCGGCCCGCTGGCAGGCTCCGAA 30 166 1 GCCCGCTGGC 0.665478 -135 TCCGCATGGCGTCTGCTCAGCCGTGTGCGG 30 233 1 GTCTGCTCAG 0.74449 -68 ********** Masking position 3 Map Score: 108.223 Number of sites scoring better than the average of aligned sites = 74649 Number in coding regions = 69331 Number in noncoding regions = 5318 Number of orfs with sites within 600 bp upstream = 1617 Fraction of orfs with sites within 600 bp upstream = 0.259717 Motif number 2 CGACCTAACCGCCCAACTCCTTCTCATCGCGCTGC 1 13 0 GCCACCCTTC 0.836693 -288 CTCATCGCGCTGCGCGCTCTGCATCGTCGTCGGGC 1 49 0 TGCCCCTGCC 0.982527 -252 CGACCTAACCGCCCAACTCCTTCTCATCGCGCTGC 1 71 0 GCCACCCTTC 0.836693 -230 CTCATCGCGCTGCGCGCTCTGCATCGTCGTCGGGC 1 107 0 TGCCCCTGCC 0.982527 -194 GGGCTGGTGGCGCTCACCCCGTTCCGGACTCAGAA 1 180 1 CGCCCCCGTC 0.989581 -121 CCACCTCGTAGGCCGCCCATGTATCGGCCTTGGTG 2 11 1 GGCGCATGTC 0.62784 -146 CCGTTACGGTGCCGACCACCTCGGCGGTATGAACG 2 52 1 GCCACCCTCC 0.950904 -105 GCCCGAATTCTCCTCGGTCCGCTGCGCAGCGCGTT 2 83 0 TCCCGCCGCC 0.979224 -74 CTCACGCACTCCCGCACTCCTCATCGTGGACCAAA 2 120 0 CCCCCCCTCC 0.983205 -37 CATGCTGTTTGGCAAACAGCGCACCAAAGCACACC 3 51 0 GGCACGCGCC 0.787762 -123 CCACCTCATCGCTACGCTCTGCATCGTCGTCGGCG 4 15 0 GCTCCCTGCC 0.954252 -213 AAGCGGGTGGTGCCCCCACCTCATCGCTACGCTCT 4 30 0 TGCCCCCTCC 0.983357 -198 GGTCATCAGCGCCACTCTCCCCCGCAAGCGGGTGG 4 55 0 GCCCCCCCCC 0.990513 -173 CCACCTCATCGCTACGCTCTGCATCGTCGTCGGCG 4 92 0 GCTCCCTGCC 0.954252 -136 AAGCGGGTGGTGCCCCCACCTCATCGCTACGCTCT 4 107 0 TGCCCCCTCC 0.983357 -121 GGTCATCAGCGCCACTCTCCCCCGCAAGCGGGTGG 4 132 0 GCCCCCCCCC 0.990513 -96 CCACCTCATCGCTACGCTCTGCATCGTCGTCGGCG 4 169 0 GCTCCCTGCC 0.954252 -59 AAGCGGGTGGTGCCCCCACCTCATCGCTACGCTCT 4 184 0 TGCCCCCTCC 0.983357 -44 CAGCGCCACTCTCCCCCGCAAGCGGGTGG 4 209 0 GCCCCCCCCC 0.990513 -19 TACCGTCGGAGCCGCACACCGTCACAGCGAGGTAG 5 29 0 GCCCCCCGTC 0.99078 -28 CCCGCGCGCACCCCGCGAGCAGACACAGA 8 5 1 CGCCCCCGCG 0.905827 -126 TGTGTCTGCTCGCCCAGCACGCGACCCGGCGGCTC 8 72 1 CGCCGACGCC 0.915167 -59 GCGACCCGGCGGCTCACCCTCCCACCCTGCTGGAC 8 92 1 GGCCCCTCCC 0.971351 -39 CCTGGGCGCAGGCACAAACCGCACCAACATTGGTG 10 49 1 GGCCACCGCC 0.966288 -252 GGTGGAACGTGGTGCACACTGCACCTGGGGTTCTG 10 80 1 GGTCCCTGCC 0.636314 -221 CTGCACCTGGGGTTCTGCCCTCATCGTGTGTCAGC 10 98 1 GGTCGCCTCC 0.910612 -203 TCAGGCCAGTCTCAGGCGCTGCGACGACACTG 10 279 1 CTCGCCTGCC 0.692575 -22 CGACATCCCGCCCGGTCACCTTTTCAGGCCGAAGT 12 72 1 CCCGCCCTTC 0.785737 -110 GCTGGCTTAAGGCCCGCGCCGTCAATTACAACGTG 15 12 1 GGCCCCCGTA 0.836279 -99 CGCGCCGACTTTAGCAGGTCGAAGT 15 96 0 CGCCGCTTTC 0.548675 -15 TCCGCCACGCGGCCACCACCGCGCCGATCACAGCC 17 74 1 GGCACCCGCC 0.992534 -72 GCTGCTGTCTCCTTGTCTCGAAGTCGT 17 129 0 TGCGCCCTTC 0.787008 -17 GCCTAGAATCCGCGCGCCGCGCGTCTCATTTGTGT 19 37 1 CGCCCGCGCC 0.953193 -264 CGGGGGTGCCGTCCATGCCCGCAGCGTATGTCCAA 20 22 1 GTCAGCCGCC 0.789917 -241 AGGCGCGCCTGCCCGACGGCGTCGCCAATTGGACA 20 50 0 GCCGCGCGTC 0.849605 -213 ACACGCCCGGCGTGCCGGACGCGACGAAGGTCACT 20 134 1 CGTCGACGCC 0.62338 -129 CTACTCAACGGCCGCCGAGCGCGTCGGTTCGGCTA 21 12 1 GCCCGGCGCC 0.917458 -146 GGCGATGGTTTTCCGGCACCGCGCCGCGCTACATT 21 92 1 TTCGCCCGCC 0.87602 -66 CCTTAGCATCGCTGCGCTCTGCATCGTCGCCGGCG 23 15 0 GCTCCCTGCC 0.927885 -35 ATTTTGCGTCTGCTCGCGCCGCCACCGACAGGGCC 25 67 1 TGCCCCCGCC 0.996251 -30 GGTACGCTCTTGCAGTCACTGTAGCCGCCGTCGGT 26 23 0 TGCGCCTGTC 0.785804 -82 TGGTCCTTCGGGTTCCCTACGCGACCCGTCATCCT 28 15 1 GGTCCACGCC 0.949382 -76 ACGCCAATTGGTCGCTCTCCGTCGCCGTTGTGGAA 30 24 0 GTCCCCCGTC 0.966551 -277 AATTGGCGTTGGTCCGGGACGCTGCCTCAAGCGTG 30 50 1 GGTCGACGCC 0.83036 -251 CAGCCCGGTCGCCAGCAGCCGCTACTGGTACCAAC 30 104 1 GCCGACCGCC 0.888779 -197 CCCGCTGGCAGGCTCCGAACGTGCCCCAAATCGGG 30 177 1 GGCCGACGTC 0.886793 -124 *** * * **** * Masking position 15 Map Score: 92.8883 Number of sites scoring better than the average of aligned sites = 25048 Number in coding regions = 23435 Number in noncoding regions = 1613 Number of orfs with sites within 600 bp upstream = 879 Fraction of orfs with sites within 600 bp upstream = 0.141182 Motif number 3 CGACCTAACCGCCCAACTCCTTCTCATCGCGCT 1 15 0 GCCACCCTTC 0.590122 -286 CTCATCGCGCTGCGCGCTCTGCATCGTCGTCGG 1 51 0 TGCCCCTGCA 0.933752 -250 CGACCTAACCGCCCAACTCCTTCTCATCGCGCT 1 73 0 GCCACCCTTC 0.590122 -228 CTCATCGCGCTGCGCGCTCTGCATCGTCGTCGG 1 109 0 TGCCCCTGCA 0.933752 -192 AGCGCCACCAGCCCATCACCGGCGGGCGTCTTG 1 161 0 GCCACCCGGC 0.900687 -140 ATGGGCTGGTGGCGCTCACCCCGTTCCGGACTC 1 178 1 GGCCCCCCCG 0.990136 -123 CCGTTACGGTGCCGACCACCTCGGCGGTATGAA 2 52 1 GCCACCCTCG 0.927401 -105 AATTCTCCTCGGTCCGCTGCGCAGCGCGTTCAT 2 80 0 GGTCCGCGCA 0.831025 -77 CTCACGCACTCCCGCACTCCTCATCGTGGACCA 2 122 0 CCCCCCCTCA 0.917128 -35 CATGCTGTTTGGCAAACAGCGCACCAAAGCACA 3 53 0 GGCACGCGCA 0.780939 -121 CCACCTCATCGCTACGCTCTGCATCGTCGTCGG 4 17 0 GCTCCCTGCA 0.938026 -211 AAGCGGGTGGTGCCCCCACCTCATCGCTACGCT 4 32 0 TGCCCCCTCA 0.957625 -196 GGTCATCAGCGCCACTCTCCCCCGCAAGCGGGT 4 57 0 GCCCCCCCCC 0.992689 -171 CCACCTCATCGCTACGCTCTGCATCGTCGTCGG 4 94 0 GCTCCCTGCA 0.938026 -134 AAGCGGGTGGTGCCCCCACCTCATCGCTACGCT 4 109 0 TGCCCCCTCA 0.957625 -119 GGTCATCAGCGCCACTCTCCCCCGCAAGCGGGT 4 134 0 GCCCCCCCCC 0.992689 -94 CCACCTCATCGCTACGCTCTGCATCGTCGTCGG 4 171 0 GCTCCCTGCA 0.938026 -57 AAGCGGGTGGTGCCCCCACCTCATCGCTACGCT 4 186 0 TGCCCCCTCA 0.957625 -42 CAGCGCCACTCTCCCCCGCAAGCGGGT 4 211 0 GCCCCCCCCC 0.992689 -17 TACCGTCGGAGCCGCACACCGTCACAGCGAGGT 5 31 0 GCCCCCCGTC 0.966967 -26 TTGGACCGTTGCCGCTCAATCCACGGCGCGCCG 6 27 0 GCCCCATCCA 0.5595 -115 CCCGCGCGCACCCCGCGAGCAGACACA 8 5 1 CGCCCCCGCG 0.965875 -126 ACTCTGTGTCTGCTCGCCCAGCACGCGACCCGG 8 68 1 TGCCCCAGCA 0.820319 -63 GCGACCCGGCGGCTCACCCTCCCACCCTGCTGG 8 92 1 GGCCCCTCCC 0.968183 -39 CCTGGGCGCAGGCACAAACCGCACCAACATTGG 10 49 1 GGCCACCGCA 0.933942 -252 GGTGGAACGTGGTGCACACTGCACCTGGGGTTC 10 80 1 GGTCCCTGCA 0.945271 -221 CTGCACCTGGGGTTCTGCCCTCATCGTGTGTCA 10 98 1 GGTCGCCTCA 0.436412 -203 TGTGTCAGCAGGCGAAACCCGCGCGGACGAGAA 10 124 1 GGCAACCGCG 0.610731 -177 CGCATACCACGGCGCGCCTCTCAGGCCAGTCTC 10 259 1 GGCCCTCTCA 0.728874 -42 ACTGTTGAAAGCCACACCCATGCCAGTCCACGC 11 21 1 GCCCCCATGC 0.53066 -23 GCTGGCTTAAGGCCCGCGCCGTCAATTACAACG 15 12 1 GGCCCCCGTC 0.970948 -99 TTACAACGTGGCCGCACACCGGTTGGTGTGTGG 15 37 1 GCCCCCCGGT 0.764959 -74 TCCGCCACGCGGCCACCACCGCGCCGATCACAG 17 74 1 GGCACCCGCG 0.979059 -72 CGTACGGGCGGCCACGCTCAACCAACAACGAAA 18 19 1 GCCCCCAACC 0.456218 -58 TCGCCTAGAATCCGCGCGCCGCGCGTCTCATTT 19 35 1 TCCCCCCGCG 0.978051 -266 ACCTGCCGGCCGCTAGCACCCCGGGCCGACCCT 19 257 0 CGCACCCCCG 0.603405 -44 TGGTTTTCCGGCACCGCGCCGCGCTACATTCGA 21 97 1 GCACCCCGCG 0.862711 -61 CAGCCGGGATTCCTCTCACCGCA 22 1 0 TCCCCCCGCA 0.984484 -25 CCTTAGCATCGCTGCGCTCTGCATCGTCGCCGG 23 17 0 GCTCCCTGCA 0.938024 -33 GTGCCTCCCACCCGCGAGCAGACGC 25 3 1 GCCCCCCCGC 0.951159 -94 ATTTTGCGTCTGCTCGCGCCGCCACCGACAGGG 25 67 1 TGCCCCCGCC 0.987239 -30 AGCCGCCGTCGGTCAGCCCCGCAGG 26 3 0 GGTACCCGCA 0.932788 -102 ACTTAGCCTAGGTACGCTCTTGCAGTCACTGTA 26 35 0 GGTCCCTTGC 0.456427 -70 TGGTCCTTCGGGTTCCCTACGCGACCCGTCATC 28 15 1 GGTCCACGCG 0.762246 -76 GGATCCGGGCGGTACCCCACTCACGTCGGCGCG 30 142 0 GGTCCACTCA 0.586975 -159 *** * * ***** Masking position 7 Map Score: 70.5791 Number of sites scoring better than the average of aligned sites = 15006 Number in coding regions = 13860 Number in noncoding regions = 1146 Number of orfs with sites within 600 bp upstream = 752 Fraction of orfs with sites within 600 bp upstream = 0.120784 Motif number 4 GAAGGAGTTGGGCGGTTAGGTCGAGCCCGACGA 1 25 1 GGCGGTGGCG 0.972611 -276 GAAGGAGTTGGGCGGTTAGGTCGAGCCCGACGA 1 83 1 GGCGGTGGCG 0.972611 -218 CATCACCGGCGGGCGTCTTGACCTCCACGAGTG 1 148 0 GGGCGTTGCC 0.925093 -153 CAAGACGCCCGCCGGTGATGGGCTGGTGGCGCT 1 161 1 GCCGGTTGGC 0.761648 -140 ATGGGCTGGTGGCGCTCACCCCGTTCCGGACTC 1 178 1 GGCGCTCCCG 0.617873 -123 TTGGTGAACCGGCCGTTACGGTGCCGACCACCT 2 40 1 GGCCGTCGTG 0.729944 -117 CGACCACCTCGGCGGTATGAACGCGCTGCGCAG 2 64 1 GGCGGTGACG 0.68417 -93 CGAAACCGCCGGCAGGTGGGATCTCAAACAA 3 9 0 GGCAGGGGTC 0.261772 -165 CCCACCTGCCGGCGGTTTCGGCGGCTGATGGTG 3 22 1 GGCGGTCGCG 0.98569 -152 TCCCCCGCAAGCGGGTGGTGCCCCCACCTCATC 4 40 0 GCGGGTTGCC 0.976416 -188 GGGGGAGAGTGGCGCTGATGACCTGCGCCGACG 4 67 1 GGCGCTTGCC 0.982373 -161 TCCCCCGCAAGCGGGTGGTGCCCCCACCTCATC 4 117 0 GCGGGTTGCC 0.976416 -111 GGGGGAGAGTGGCGCTGATGACCTGCGCCGACG 4 144 1 GGCGCTTGCC 0.982373 -84 TCCCCCGCAAGCGGGTGGTGCCCCCACCTCATC 4 194 0 GCGGGTTGCC 0.976416 -34 CCCGCTTGCGGGGGAGAGTGGCGCTG 4 212 1 GGGGAGTGCG 0.527846 -16 CGTGGATTGAGCGGCAACGGTCCAAGCTGATTT 6 35 1 GCGGCAGGCC 0.77968 -107 GTGTCTGCTCGCGGGGTGCGCGCGGG 8 4 0 GCGGGGCGGC 0.707562 -127 GCACAAAATCGGCGGTTTTGATGCGACTCTGTG 8 43 1 GGCGGTTGTG 0.914958 -88 CAGGGTGGGAGGGTGAGCCGCCGGGTCGCGTGC 8 88 0 GGGTGACGCG 0.412524 -43 GCGTGGAACGGCAGGGATCGTCCGAATAAACGG 10 17 0 GCAGGGCGCC 0.747797 -284 ACACTGCACCTGGGGTTCTGCCCTCATCGTGTG 10 95 1 TGGGGTTGCC 0.739062 -206 TCTCGTCCGCGCGGGTTTCGCCTGCTGACACAC 10 123 0 GCGGGTCGCT 0.630761 -178 AGCCACATCAGCCACATTGGCCCCATGGACGGG 10 207 0 GCCACAGGCC 0.258317 -94 AAAGGTGACCGGGCGGGATGTCGGGCTTCGGCG 12 62 0 GGGCGGTGCG 0.889051 -120 TCGACGACCTGGGCCTTGTGCTCAAACTCGACC 13 14 0 GGGCCTTGTC 0.551702 -54 CGGCGGTTTTGCCGCATTGCGCTG 14 2 1 GGCGGTTGCG 0.986219 -32 CTGTGATCGGCGCGGTGGTGGCCGCGTGGCGGA 17 74 0 CGCGGTTGCC 0.690494 -72 TGAAGTTCTAGCGGCTGTGATCGGCGCGGTGGT 17 88 0 GCGGCTGACG 0.410107 -58 CAGACGTACGGGCGGCCACGCTCAACCAACAAC 18 15 1 GGCGGCCGTC 0.532629 -62 AGGTCTTGGCGGCTGACATGGCGGTGTGATCTG 19 96 0 GGCTGATGCG 0.420681 -205 CGAAAGGCATGGGACGCCCGACGTTTACGGTTT 19 157 0 GGGACGCGCG 0.723743 -144 AAACCTGCCGGCCGCTAGCACCCCGGGCCGACC 19 259 0 GCCGCTCACC 0.746694 -42 CGTCGTGTCCGGGGGTGCCGTCCATGCCCGCAG 20 13 1 GGGGGTCGCC 0.965555 -250 GTCCATGCCCGCAGCGTATGTCCAATTGGCGAC 20 32 1 GCAGCGTGCC 0.592479 -231 GTTCGAACCAGGCGCGCCTGCCCGACGGCGTCG 20 61 0 GGCGCGTGCC 0.973551 -202 GTCGGGTACAGCCGCAAGCGTCCAGCTCGGTGC 20 103 0 GCCGCACGCC 0.927174 -160 CGTCCGGCACGCCGGGCGTGTCGGGTACAGCCG 20 122 0 GCCGGGTGCG 0.972962 -141 CGCCCGGCGTGCCGGACGCGACGAAGGTCACTT 20 137 1 GCCGGACGCG 0.94259 -126 GCTCATATATGGCCCATACGCCGGTACGCGACG 20 231 1 GGCCCACGCG 0.673428 -32 TAGCCGAACCGACGCGCTCGGCGGCCGTTGAGT 21 14 0 GACGCGCGCG 0.570597 -144 CTCGAATGTAGCGCGGCGCGGTGCCGGAAAACC 21 98 0 GCGCGGCGTG 0.515809 -60 CGTGTGGTGCGCCAGTTTTGTCCCGATGTGGTG 24 42 1 GCCAGTTGCC 0.803081 -28 GGCGCGGCCCTGTCGGTGGCGGCGCGAG 25 79 0 GGCCCTCGTG 0.652646 -18 CCTGCGGGGCTGACCGACGGCGGCT 26 3 1 TGCGGGTGCC 0.74361 -102 AGGGGCTTTCATCCTTCTTTGGGG 26 91 0 GGGGCTCACC 0.768655 -14 CGCTTCGGCTGCGGCTCCTGGTCGGACAGGTTG 29 28 1 GCGGCTTGTC 0.80296 -43 GGTACCAGTAGCGGCTGCTGGCGACCGGGCTGC 30 103 0 GCGGCTTGCG 0.958515 -198 CACTCACGTCGGCGCGCATGTTGGTACCAGTAG 30 125 0 GGCGCGTGTG 0.843181 -176 CCGACGTGAGTGGGGTACCGCCCGGATCCGGCC 30 146 1 TGGGGTCGCC 0.789931 -155 ****** ** ** Masking position 1 Map Score: 69.4471 Number of sites scoring better than the average of aligned sites = 49838 Number in coding regions = 47404 Number in noncoding regions = 2434 Number of orfs with sites within 600 bp upstream = 1063 Fraction of orfs with sites within 600 bp upstream = 0.170736 Motif number 5 AGAAGGAGTTGGGCGGTTAGGTCGAGCCCGA 1 24 1 GGGGGTTAGG 0.390113 -277 AGAAGGAGTTGGGCGGTTAGGTCGAGCCCGA 1 82 1 GGGGGTTAGG 0.390113 -219 GCCCATCACCGGCGGGCGTCTTGACCTCCAC 1 153 0 GGCGGCGTCT 0.730303 -148 GGTGATGGGCTGGTGGCGCTCACCCCGTTCC 1 174 1 TGGGGCGCTC 0.469982 -127 CCGATACATGGGCGGCCTACGAGGTGG 2 7 0 GGCGCCTACG 0.85039 -150 GCACCGTAACGGCCGGTTCACCAAGGCCGAT 2 33 0 GGCGGTTCAC 0.54551 -124 CCGGCCGTTACGGTGCCGACCACCTCGGCGG 2 48 1 CGGGCCGACC 0.732438 -109 ATTCTCCTCGGTCCGCTGCGCAGCGCGTTCA 2 81 0 GTCGCTGCGC 0.678503 -76 CGGCGGTTTCGGCGGCTGATGGTGTGCTTTG 3 31 1 GGCGCTGATG 0.725298 -143 TGCCGCGCTAGGGCGACGTTCACCGGATTTG 3 140 1 GGGGACGTTC 0.378441 -34 CCCCGCAAGCGGGTGGTGCCCCCACCTCATC 4 40 0 GGGGGTGCCC 0.937888 -188 CCCCGCAAGCGGGTGGTGCCCCCACCTCATC 4 117 0 GGGGGTGCCC 0.937888 -111 CCCCGCAAGCGGGTGGTGCCCCCACCTCATC 4 194 0 GGGGGTGCCC 0.937888 -34 CCCTACCGTCGGAGCCGCACACCGTCACAG 5 37 0 CGGGCCGCAC 0.449615 -20 GTTCTCCTCGGGCTGCCGATCCGATTAACTA 7 18 0 GGCGCCGATC 0.938902 -27 GGGTGGGAGGGTGAGCCGCCGGGTCGCGTGC 8 88 0 GTGGCCGCCG 0.717275 -43 GGGCCAATGTGGCTGATGTGGCTAAACCTCG 10 217 1 GGCGATGTGG 0.306303 -84 AGACTGGCCTGAGAGGCGCGCCGTGGTATGC 10 260 0 GAGGGCGCGC 0.570732 -41 CGGGCGGGATGTCGGGCTTCGGCGGTGAGAA 12 55 0 GTCGGCTTCG 0.296735 -127 GCTGGCTTAAGGCCCGCGCCGTCAATTACAA 15 12 1 GGCCGCGCCG 0.675455 -99 GCGGCAGACGTACGGGCGGCCAC 18 3 1 GGCGACGTAC 0.517998 -74 CAGACGTACGGGCGGCCACGCTCAACCAACA 18 15 1 GGCGCCACGC 0.588191 -62 CAAATGAGACGCGCGGCGCGCGGATTCTAGG 19 38 0 GCGGGCGCGC 0.484342 -263 CGTCTCATTTGTGTGCCGAAGTGTGCTAGCC 19 58 1 GTGGCCGAAG 0.402108 -243 ACAAGGTCTTGGCGGCTGACATGGCGGTGTG 19 101 0 GGCGCTGACA 0.379185 -200 ACCTTGTTAAGGATGCTGACGTAAACGTTAA 19 125 1 GGAGCTGACG 0.271358 -176 AACCGTAAACGTCGGGCGTCCCATGCCTTTC 19 158 1 GTCGGCGTCC 0.849674 -143 GTGGAGGCTTGGCCGGTTAGCGTTACGCCAA 19 199 1 GGCGGTTAGC 0.627535 -102 CCAATCCACAGGCAGCCGTACGCAAACACAC 19 226 1 GGCGCCGTAC 0.921126 -75 TCGTGTCCGGGGGTGCCGTCCATGCCCGCAG 20 15 1 GGGGCCGTCC 0.903255 -248 GACGCCGTCGGGCAGGCGCGCCTGGTTCGAA 20 62 1 GGCGGCGCGC 0.978797 -201 CTCGGTGCTCGGCCGGCGTTCGAACCAGGCG 20 80 0 GGCGGCGTTC 0.917269 -183 GCTGGACGCTTGCGGCTGTACCCGACACGCC 20 110 1 TGCGCTGTAC 0.141461 -153 TACCCGACACGCCCGGCGTGCCGGACGCGAC 20 128 1 GCCGGCGTGC 0.718038 -135 ACTACTCAACGGCCGCCGAGCGCGTCGGTTC 21 11 1 GGCGCCGAGC 0.970968 -147 GCAACCATGCGGTAGCCGAACCGACGCGCTC 21 28 0 GGTGCCGAAC 0.44613 -130 GGGTTTTACCGGCTGGCGATGGTTTTCCGGC 21 78 1 GGCGGCGATG 0.908033 -80 TCCGCGCCGGCGACGATGCAGAGCG 23 5 1 CGCGGCGACG 0.784868 -45 CGATGCTAAGGAGCGGCGCCG 23 39 1 GAGGGCGCCG 0.463399 -11 AGAAACGCCCGTGTGGTGCGCCAGTTTTGTC 24 33 1 GTGGGTGCGC 0.597404 -37 CAGTCACTGTAGCCGCCGTCGGTCAGCCCCG 26 15 0 AGCGCCGTCG 0.364605 -90 TGGTCGCTTCGGCTGCGGCTCCTGGTCGGAC 29 24 1 GGCGCGGCTC 0.641477 -47 CCGGGTCGGCGACTTCCACAACGG 30 4 1 GGTGGCGACT 0.160116 -297 CCACGCTTGAGGCAGCGTCCCGGACCAACGC 30 55 0 GGCGCGTCCC 0.527463 -246 CTGGCGACCGGGCTGCTGAAGCAAATCCCGC 30 88 0 GGCGCTGAAG 0.750094 -213 CAGTAGCGGCTGCTGGCGACCGGGCTGCTGA 30 100 0 TGCGGCGACC 0.799693 -201 GTACCAACATGCGCGCCGACGTGAGTGGGGT 30 131 1 GCGGCCGACG 0.585228 -170 GACGTGAGTGGGGTACCGCCCGGATCCGGCC 30 148 1 GGGACCGCCC 0.459812 -153 CCGGCCCGCTGGCAGGCTCCGAACGTGCCCC 30 173 1 GGCGGCTCCG 0.906608 -128 *** ******* Masking position 5 Map Score: 43.7191 Number of sites scoring better than the average of aligned sites = 47885 Number in coding regions = 44793 Number in noncoding regions = 3092 Number of orfs with sites within 600 bp upstream = 1235 Fraction of orfs with sites within 600 bp upstream = 0.198362 Motif number 6 TCATCGTGGACCAAAATGCCCGAATTCTCC 2 105 0 CCAAAATGCC 0.79775 -52 CCATCAGCCGCCGAAACCGCCGGCAGGTGG 3 23 0 CCGAAACCGC 0.872297 -151 CGCGGCAAGGCCAAAATCGGACAAGTCACA 3 117 0 CCAAAATCGG 0.8984 -57 GGAAAATCCTACAAATCCGGTGAACGTCGC 3 152 0 ACAAATCCGG 0.870024 -22 CCAGGAATCGCCAAATCAGCTTGGACCGTT 6 50 0 CCAAATCAGC 0.649494 -92 CAGAGTCGCATCAAAACCGCCGATTTTGTG 8 44 0 TCAAAACCGC 0.763653 -87 GTGTCAGCAGGCGAAACCCGCGCGGACGAG 10 125 1 GCGAAACCCG 0.591868 -176 GCCAAGCAGCACAAATCGCCCTACTCTTGA 10 164 1 ACAAATCGCC 0.748601 -137 TGACCACCAAACAAAACCCGTCCATGGGGC 10 191 1 ACAAAACCCG 0.804709 -110 GCCACATCAGCCACATTGGCCCCATGGACG 10 209 0 CCACATTGGC 0.716741 -92 ACCTCGTCGAACAAACCCGCATACCACGGC 10 242 1 ACAAACCCGC 0.692151 -59 GTGTGATCCAGCACAATCCCGTCATCGTTG 13 47 0 GCACAATCCC 0.658101 -21 GCGCAATGCGGCAAAACCGCCG 14 3 0 GCAAAACCGC 0.9614 -31 GGTGTCACCACATCGGGACAAAACTGG 24 53 0 CCACATCGGG 0.802739 -17 GCGAGCAGACGCAAAATCGCCCATTTTCAT 25 24 1 GCAAAATCGC 0.90555 -73 GCGAGCAGACGCAAAATCGCCCTTTTCGTC 25 54 0 GCAAAATCGC 0.90555 -43 CCGCGTATTTACAAATTGCGTTATATGTCT 27 21 1 ACAAATTGCG 0.416556 -88 GCCGAAGCGACCAAATTCGCGGACTG 29 7 0 CCAAATTCGC 0.909845 -64 TCGGCGACTTCCACAACGGCGACGGAGAGC 30 16 1 CCACAACGGC 0.888415 -285 GGCTGCTGAAGCAAATCCCGCTGCCACGCT 30 79 0 GCAAATCCCG 0.865791 -222 CGAACGTGCCCCAAATCGGGTTTCATAGCG 30 192 1 CCAAATCGGG 0.911509 -109 ********** Masking position 5 Map Score: 16.3216 Number of sites scoring better than the average of aligned sites = 2657 Number in coding regions = 2350 Number in noncoding regions = 307 Number of orfs with sites within 600 bp upstream = 209 Fraction of orfs with sites within 600 bp upstream = 0.0335689 Motif number 7 CATCGTCGTCGGGCTCGACCTAACCGCCCAACT 1 30 0 GGCTCGACTA 0.873545 -271 CATCGTCGTCGGGCTCGACCTAACCGCCCAACT 1 88 0 GGCTCGACTA 0.873545 -213 ATCGTCGTCGGCGCAGGTCATCAGCGCCACTCT 4 72 0 GCCAGGTCTA 0.973379 -156 ATCGTCGTCGGCGCAGGTCATCAGCGCCACTCT 4 149 0 GCCAGGTCTA 0.973379 -79 CATCCCGCCCGGTCACCTTTTCAGGCCGAAGTA 12 75 1 GGCACCTTTA 0.82565 -107 ATGTGCGCTTGCACAGGACTTGAGAGGATACGG 12 155 1 GCCAGGACTA 0.9215 -27 TGAGCACAAGGCCCAGGTCGTCGACAACGATGA 13 23 1 GCCAGGTCTG 0.92033 -45 ACCGGTGTGCGGCCACGTTGTAATTGACGGCGC 15 27 0 GGCACGTTTA 0.979802 -84 GTTGGTGTGTGGCCACGTTGTTATCTGAACGAC 15 58 1 GGCACGTTTA 0.979802 -53 GCCGCGTGGCGGACAGGTTATGACTCAACGGTT 17 54 0 GGCAGGTTTA 0.976615 -92 CCGTCCTCTCGCACTCGTTGTGACCGCACAGTA 28 64 0 GCCTCGTTTA 0.907997 -27 GCTCCTGGTCGGACAGGTTGTCGTCCTCGCCGT 29 41 1 GGCAGGTTTG 0.929547 -30 ACCCGATTTGGGGCACGTTCGGAGCCTGCCAGC 30 180 0 GGCACGTTGA 0.884409 -121 ** ****** * * Masking position 4 Map Score: 14.453 Number of sites scoring better than the average of aligned sites = 355 Number in coding regions = 333 Number in noncoding regions = 22 Number of orfs with sites within 600 bp upstream = 20 Fraction of orfs with sites within 600 bp upstream = 0.00321234 Motif number 8 CTCCTTCTCATCGCGCTGCGC 1 2 0 TCGCGCTGCG 0.972722 -299 CTCCTTCTCATCGCGCTGCGCGCTCTGCAT 1 60 0 TCGCGCTGCG 0.972722 -241 CTATTTCTCATCGCGCTGCGCGCTCTGCAT 1 118 0 TCGCGCTGCG 0.972722 -183 CCGACCACCTCGGCGGTATGAACGCGCTGC 2 63 1 CGGCGGTATG 0.665661 -94 GGCGGTATGAACGCGCTGCGCAGCGGACCG 2 74 1 ACGCGCTGCG 0.943636 -83 TTTCGGCGGCTGATGGTGTGCTTTGGTGCG 3 37 1 TGATGGTGTG 0.709079 -137 TACCTCGCTGTGACGGTGTGCGGCTCCGAC 5 30 1 TGACGGTGTG 0.930336 -27 GCCGCTCAATCCACGGCGCGCCGTGAATAC 6 20 0 CCACGGCGCG 0.868964 -122 CTGTGTCTGCTCGCGGGGTGCGCGCGGG 8 9 0 TCGCGGGGTG 0.899033 -122 CGATTTTGTGCGACTCTGTGTCTGCTCGCG 8 24 0 CGACTCTGTG 0.575805 -107 GGTTTTGATGCGACTCTGTGTCTGCTCGCC 8 56 1 CGACTCTGTG 0.575805 -75 GTTCCACCAATGTTGGTGCGGTTTGTGCCT 10 58 0 TGTTGGTGCG 0.322799 -243 GCAGAACCCCAGGTGCAGTGTGCACCACGT 10 86 0 AGGTGCAGTG 0.2097 -215 AACCCGCATACCACGGCGCGCCTCTCAGGC 10 255 1 CCACGGCGCG 0.868964 -46 GGCCAGTCTCAGGCGCTGCGACGACACTG 10 282 1 AGGCGCTGCG 0.965803 -19 TGTCGGGCTTCGGCGGTGAGAAAGCGGATC 12 47 0 CGGCGGTGAG 0.856017 -135 ACGTTGTAATTGACGGCGCGGGCCTTAAGC 15 16 0 TGACGGCGCG 0.873897 -95 CGGCTGTGATCGGCGCGGTGGTGGCCGCGT 17 80 0 CGGCGCGGTG 0.96305 -66 CACAAATGAGACGCGCGGCGCGCGGATTCT 19 41 0 ACGCGCGGCG 0.862084 -260 GCGGCTGACATGGCGGTGTGATCTGGTGCC 19 91 0 TGGCGGTGTG 0.975747 -210 CACCCCGGGCCGACCCTGTGTGTTTGCGTA 19 244 0 CGACCCTGTG 0.53291 -57 GAATGTAGCGCGGCGCGGTGCCGGAAAACC 21 98 0 CGGCGCGGTG 0.96305 -60 GCCCTGTCGGTGGCGGCGCGAGCAGACGCA 25 71 0 TGGCGGCGCG 0.95429 -26 TCAAATCCCAACGTGGTGTGGCTCATGAGG 27 78 1 ACGTGGTGTG 0.671436 -31 GTCGTCCTCGCCGTGGTGTGT 29 60 1 CCGTGGTGTG 0.87541 -11 TGCGGATACTTGACGCTGTGACGCAGCACC 30 258 1 TGACGCTGTG 0.934926 -43 AACCGAGATGCGGTGCTGCGTCACAGCGTC 30 269 0 CGGTGCTGCG 0.946585 -32 ********** Masking position 10 Map Score: 43.6111 Number of sites scoring better than the average of aligned sites = 13773 Number in coding regions = 12783 Number in noncoding regions = 990 Number of orfs with sites within 600 bp upstream = 640 Fraction of orfs with sites within 600 bp upstream = 0.102795 Motif number 9 CGATGAGAAGGAGTTGGGCGGTTAGGTCGAG 1 19 1 GGTTGGGCGG 0.94635 -282 CCTTCTCATCGCGCTGCGCGCTCTGCATCGT 1 57 0 GGCTGCGCGC 0.774853 -244 CGATGAGAAGGAGTTGGGCGGTTAGGTCGAG 1 77 1 GGTTGGGCGG 0.94635 -224 ATTTCTCATCGCGCTGCGCGCTCTGCATCGT 1 115 0 GGCTGCGCGC 0.774853 -186 ACGCCCGCCGGTGATGGGCTGGTGGCGCTCA 1 165 1 GGATGGGCTG 0.38487 -136 GCCTCTTCAGGTGTTTGTCGGCTTCGTTGCC 1 280 1 GGTTTGTCGG 0.474218 -21 CCAAGGCCGATACATGGGCGGCCTACGAGGT 2 13 0 TCATGGGCGG 0.32227 -144 TCATACCGCCGAGGTGGTCGGCACCGTAACG 2 53 0 GGGTGGTCGG 0.884488 -104 CACTACGCCACAGCTGTTCGGTTACCGTTCA 3 86 0 CGCTGTTCGG 0.829572 -88 GCCGGGTCGCGTGCTGGGCGAGCAGACACAG 8 71 0 GGCTGGGCGA 0.819802 -60 GAGGGTGAGCCGCCGGGTCGCGTGCTGGGCG 8 82 0 CCCGGGTCGC 0.706474 -49 CCCTCCCACCCTGCTGGACGGTAATCAGGCA 8 108 1 CGCTGGACGG 0.982857 -23 TGCCGTTCCACGCCTGGGCGCAGGCACAAAC 10 37 1 CCCTGGGCGC 0.941657 -264 GCGATTTGTGCTGCTTGGCGGAAGAGTTCTC 10 152 0 CGCTTGGCGG 0.943519 -149 CCACATTGGCCCCATGGACGGGTTTTGTTTG 10 198 0 CCATGGACGG 0.814629 -103 TACGGAGCCCCCGGTGGACCGG 12 2 0 CGGTGGACCG 0.22817 -180 TTGCCGCATTGCGCTGGACGGGTCG 14 19 1 GGCTGGACGG 0.985579 -15 CACACACCAACCGGTGTGCGGCCACGTTGTA 15 38 0 CGGTGTGCGG 0.660888 -73 GCGGTGGTGGCCGCGTGGCGGACAGGTTATG 17 65 0 CGCGTGGCGG 0.855544 -81 GCGGCAGACGTACGGGCGGCCACGC 18 5 1 CGACGTACGG 0.286797 -72 TCCTTAACAAGGTCTTGGCGGCTGACATGGC 19 107 0 GTCTTGGCGG 0.42224 -194 CGACTGTGGAGGCTTGGCCGGTTAGCGTTAC 19 194 1 GCTTGGCCGG 0.545057 -107 AATCCACAGGCAGCCGTACGCAAACACACAG 19 228 1 CGCCGTACGC 0.418976 -73 TACGCAAACACACAGGGTCGGCCCGGGGTGC 19 244 1 CCAGGGTCGG 0.572917 -57 ATACGCTGCGGGCATGGACGGCACCCCCGGA 20 20 0 GCATGGACGG 0.847374 -243 CCAGGCGCGCCTGCCCGACGGCGTCGCCAAT 20 56 0 CGCCCGACGG 0.600824 -207 GCCGAGCACCGAGCTGGACGCTTGCGGCTGT 20 98 1 GGCTGGACGC 0.957729 -165 CCGGCACGCCGGGCGTGTCGGGTACAGCCGC 20 121 0 GGCGTGTCGG 0.758861 -142 CACGCCCGGCGTGCCGGACGCGACGAAGGTC 20 135 1 GGCCGGACGC 0.886813 -128 CCGAACCGACGCGCTCGGCGGCCGTTGAGTA 21 13 0 GGCTCGGCGG 0.855336 -145 GGCGCGGCCCTGTCGGTGGCGGCGCG 25 81 0 GCCCTGTCGG 0.536959 -16 AGAGTACCCAGTACTGTGCGGTCACAACGAG 28 53 1 GACTGTGCGG 0.372327 -38 TCGGCTGCGGCTCCTGGTCGGACAGGTTGTC 29 32 1 CCCTGGTCGG 0.948789 -39 ATTGGCGTTGGTCCGGGACGCTGCCTCAAGC 30 51 1 GCCGGGACGC 0.805391 -250 CGGAGCCTGCCAGCGGGCCGGATCCGGGCGG 30 163 0 CGCGGGCCGG 0.882006 -138 * ********* Masking position 9 Map Score: 42.885 Number of sites scoring better than the average of aligned sites = 21206 Number in coding regions = 19851 Number in noncoding regions = 1355 Number of orfs with sites within 600 bp upstream = 863 Fraction of orfs with sites within 600 bp upstream = 0.138612 Motif number 10 TAACCGAACAGCTGTGGCGTAGTGTGTGAC 3 93 1 GCTGTGGCGT 0.896801 -81 TTCACGGCGCGCCGTGGATTGAGCGGCAAC 6 23 1 GCCGTGGATT 0.879859 -119 TGAGAGGCGCGCCGTGGTATGCGGGTTTGT 10 252 0 GCCGTGGTAT 0.879859 -49 CCAGCAATTAACCGTTGAGTCATAACCTGT 17 45 1 ACCGTTGAGT 0.905973 -101 GTATTCCGTTTCCGTGGAGTTATTTGGCTG 18 54 0 TCCGTGGAGT 0.912121 -23 TTCGGTCGCGACTGTGGAGGCTTGGCCGGT 19 186 1 ACTGTGGAGG 0.621836 -115 GTCGTCGTGTCCGGGGGTGC 20 1 1 GTCGTCGTGT 0.690467 -262 GGGAATTACCGTCGCGTACCGGCGTAT 20 246 0 ACCGTCGCGT 0.874987 -17 GCGCTCGGCGGCCGTTGAGTAGT 21 4 0 GCCGTTGAGT 0.96327 -154 GTCAAATCCCAACGTGGTGTGGCTCATGAG 27 77 1 AACGTGGTGT 0.729047 -32 TGTCGTCCTCGCCGTGGTGTGT 29 59 1 GCCGTGGTGT 0.989356 -12 GCTCTCCGTCGCCGTTGTGGAAGTCGCCGA 30 16 0 GCCGTTGTGG 0.900882 -285 ********** Masking position 5 Map Score: 8.29134 Number of sites scoring better than the average of aligned sites = 2255 Number in coding regions = 2115 Number in noncoding regions = 140 Number of orfs with sites within 600 bp upstream = 130 Fraction of orfs with sites within 600 bp upstream = 0.0208802 Motif number 11 GCGCAGCGCGATGAGAAGGAGTTGGGC 1 8 1 GCGATGAGAA 0.940953 -293 AGCGCGCAGCGCGATGAGAAGGAGTTGGGC 1 66 1 GCGATGAGAA 0.940953 -235 AGCGCGCAGCGCGATGAGAAATAGCACTCG 1 124 1 GCGATGAGAA 0.940953 -177 TGAACGCGCTGCGCAGCGGACCGAGGAGAA 2 81 1 GCGCAGCGGA 0.770932 -76 ATTTTGGTCCACGATGAGGAGTGCGGGAGT 2 118 1 ACGATGAGGA 0.71653 -39 GCAGAGCGTAGCGATGAGGTGGGGGCACCA 4 28 1 GCGATGAGGT 0.943149 -200 GGGGAGAGTGGCGCTGATGACCTGCGCCGA 4 68 1 GCGCTGATGA 0.934077 -160 GCAGAGCGTAGCGATGAGGTGGGGGCACCA 4 105 1 GCGATGAGGT 0.943149 -123 GGGGAGAGTGGCGCTGATGACCTGCGCCGA 4 145 1 GCGCTGATGA 0.934077 -83 GCAGAGCGTAGCGATGAGGTGGGGGCACCA 4 182 1 GCGATGAGGT 0.943149 -46 GCGATGAGGCTATATAGGCT 9 17 0 GCGATGAGGC 0.980627 -10 CCAGTCTCAGGCGCTGCGACGACACTG 10 284 1 GCGCTGCGAC 0.889633 -17 TCGGGCTTCGGCGGTGAGAAAGCGGATCTC 12 45 0 GCGGTGAGAA 0.852855 -137 CCCGTCCAGCGCAATGCGGCAAAACCGCCG 14 11 0 GCAATGCGGC 0.704635 -23 TAACCTGTCCGCCACGCGGCCACCACCGCG 17 67 1 GCCACGCGGC 0.567625 -79 TCCGCGCCGGCGACGATGCAGAGCGCAGC 23 10 1 GCGACGATGC 0.789491 -40 GCAGAGCGCAGCGATGCTAAGGAGCGGCGC 23 28 1 GCGATGCTAA 0.865656 -22 CCTGCGGGGCTGACCGACGGCGG 26 4 1 GCGGGGCTGA 0.669442 -101 TGGGTACTCTGCGAGGATGACGGGTCGCGT 28 33 0 GCGAGGATGA 0.831726 -58 GCTGGCGACCGGGCTGCTGAAGCAAATCCC 30 90 0 GGGCTGCTGA 0.472686 -211 CTGAGCAGACGCCATGCGGATCCTATGTGC 30 223 0 GCCATGCGGA 0.895577 -78 CAACCGAGATGCGGTGCTGCGTCACAGCGT 30 270 0 GCGGTGCTGC 0.881561 -31 ********** Masking position 6 Map Score: 33.3649 Number of sites scoring better than the average of aligned sites = 5015 Number in coding regions = 4597 Number in noncoding regions = 418 Number of orfs with sites within 600 bp upstream = 338 Fraction of orfs with sites within 600 bp upstream = 0.0542885 Motif number 12 ATGCATGTGATGGTTTAGCGTTCCGCTGTG 1 251 1 TGGTTTAGCG 0.83827 -50 GCGGTTTCGGCGGCTGATGGTGTGCTTTGG 3 33 1 CGGCTGATGG 0.803588 -141 CGAACAGCTGTGGCGTAGTGTGTGACTTGT 3 97 1 TGGCGTAGTG 0.662966 -77 TGGTTGAACGTTACCTTCAC 6 132 0 TGGTTGAACG 0.910227 -10 GCACCAACATTGGTGGAACGTGGTGCACAC 10 69 1 TGGTGGAACG 0.948807 -232 TTGTGCTGCTTGGCGGAAGAGTTCTCGTCC 10 148 0 TGGCGGAAGA 0.727515 -153 ACGGAGCCCCCGGTGGACCGG 12 2 0 CGGTGGACCG 0.822412 -180 AGCTGGCTTAAGGCCCGCGCCGT 15 4 1 TGGCTTAAGG 0.81294 -107 ATTTCGTTGTTGGTTGAGCGTGGCCGCCCG 18 23 0 TGGTTGAGCG 0.941955 -54 GCCTGTGGATTGGCGTAACGCTAACCGGCC 19 209 0 TGGCGTAACG 0.933629 -92 CGTCGCGTACCGGCGTATGGGCCATATATG 20 234 0 CGGCGTATGG 0.704896 -29 GCTCGCTAGGTGGCGGAAGGAGGTGGTG 21 140 1 TGGCGGAAGG 0.961351 -18 GCCCTGTCGGTGGCGGCGCGAGCAGACGCA 25 71 0 TGGCGGCGCG 0.905345 -26 TATCCGCACACGGCTGAGCAGACGCCATGC 30 236 0 CGGCTGAGCA 0.772718 -65 CACCGCATCTCGGTTGAGCGTGTCGTA 30 284 1 CGGTTGAGCG 0.930189 -17 ********** Masking position 3 Map Score: 12.9359 Number of sites scoring better than the average of aligned sites = 4092 Number in coding regions = 3799 Number in noncoding regions = 293 Number of orfs with sites within 600 bp upstream = 256 Fraction of orfs with sites within 600 bp upstream = 0.0411179 Motif number 13 CAGCATGTGAACGGTAACCGAACAGCTGTG 3 79 1 ACGGTAACCG 0.523887 -95 TAACAGTCTGCCAGGAATCGCCAAATCAGC 6 60 0 CCAGGAATCG 0.883591 -82 CTCCGTATACCCGGAAACCGAGATCCGCTT 12 26 1 CCGGAAACCG 0.896872 -156 CGTCATTCGCCTAGAATCCGCGCGCCGCGC 19 29 1 CTAGAATCCG 0.741348 -272 CGCCAATCCACAGGCAGCCGTACGCAAACA 19 224 1 CAGGCAGCCG 0.839734 -77 CGGTAAAACCCCAGGATTCGGGACCGATTG 21 59 0 CCAGGATTCG 0.943704 -99 GTCAGCCGGGATTCCTCTCACCGCA 22 11 0 CCGGGATTCC 0.654654 -15 TGGGGGCTCACAGGGATCCGAGCGGGCTAC 26 66 0 CAGGGATCCG 0.960255 -39 ACCTGTCCGACCAGGAGCCGCAGCCGAAGC 29 29 0 CCAGGAGCCG 0.983593 -42 AGCCCGGTCGCCAGCAGCCGCTACTGGTAC 30 105 1 CCAGCAGCCG 0.94808 -196 TGGGGTACCGCCCGGATCCGGCCCGCTGGC 30 156 1 CCCGGATCCG 0.957199 -145 TAGCGCGCACATAGGATCCGCATGGCGTCT 30 217 1 ATAGGATCCG 0.64809 -84 GTCACAGCGTCAAGTATCCGCACACGGCTG 30 250 0 CAAGTATCCG 0.804188 -51 ********** Masking position 6 Map Score: 8.23877 Number of sites scoring better than the average of aligned sites = 3110 Number in coding regions = 2887 Number in noncoding regions = 223 Number of orfs with sites within 600 bp upstream = 194 Fraction of orfs with sites within 600 bp upstream = 0.0311597 Motif number 14 ********** No masking Map Score: -6.10824e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: -6.10824e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0