AlignACE version 2.2 July 7, 1998 alignACE -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -icpxR_mtub_opreg_100.orf -g0.656 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.656 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 senX3 173 senX3 #2 regX3 227 regX3 #3 tcrA 56 tcrA #4 phoP 141 phoP #5 phoR 44 phoR #6 Rv0903c 130 hypothetical protein Rv0903c #7 Rv0981 300 hypothetical protein Rv0981 #8 Rv0983 43 hypothetical protein Rv0983 #9 Rv1033c 181 hypothetical protein Rv1033c #10 Rv1200 300 hypothetical protein Rv1200 #11 Rv1222 157 hypothetical protein Rv1222 #12 Rv1348 300 hypothetical protein Rv1348 #13 cydD 86 cydD #14 cydB 29 cydB #15 appC 110 appC #16 Rv2723 25 hypothetical protein Rv2723 #17 mtrB 49 mtrB #18 mtrA 69 mtrA #19 tmk 96 tmk #20 sahH 104 sahH #21 Rv3764c 70 hypothetical protein Rv3764c #22 Rv3765c 300 hypothetical protein Rv3765c Motif number 1 TGAGATCCCACCTGCCGGCGGTTTCGGCGG 1 16 1 CCTGCCGGCG 0.914496 -158 AAGCACACCATCAGCCGCCGAAACCGCCGG 1 30 0 TCAGCCGCCG 0.953042 -144 CGGTGAACGTCGCCCTAGCGCGGCAAGGCC 1 135 0 CGCCCTAGCG 0.512988 -39 CCTGCGCCGACGACGATGCAGA 2 3 1 TGCGCCGACG 0.978802 -225 GCCACTCTCCCCCGCAAGCGGGTGGTGCCC 2 50 0 CCCGCAAGCG 0.951379 -178 GCTGATGACCTGCGCCGACGACGATGCAGA 2 80 1 TGCGCCGACG 0.978802 -148 GCCACTCTCCCCCGCAAGCGGGTGGTGCCC 2 127 0 CCCGCAAGCG 0.951379 -101 GCTGATGACCTGCGCCGACGACGATGCAGA 2 157 1 TGCGCCGACG 0.978802 -71 GCCACTCTCCCCCGCAAGCGGGTGGTGCCC 2 204 0 CCCGCAAGCG 0.951379 -24 CTGTCTACCTCGCTGTGACGGTGTGCGGCT 3 25 1 CGCTGTGACG 0.727704 -32 GACGGTGTGCGGCTCCGACGGTAGGG 3 41 1 GGCTCCGACG 0.858514 -16 AGTGTATTCACGGCGCGCCGTGGATTGAGC 4 17 1 CGGCGCGCCG 0.49846 -125 CCGTGGATTGAGCGGCAACGGTCCAAGCTG 4 34 1 AGCGGCAACG 0.702577 -108 GCGTTCTCCTCGGGCTGCCGATCCGATTAA 5 21 0 CGGGCTGCCG 0.953266 -24 CCCGCGCGCACCCCGCGAGCAGAC 6 5 1 CGCGCACCCC 0.889906 -126 GTCTGCTCGCCCAGCACGCGACCCGGCGGC 6 75 1 CCAGCACGCG 0.79994 -56 GGTGGGAGGGTGAGCCGCCGGGTCGCGTGC 6 88 0 TGAGCCGCCG 0.970041 -43 CGGCGGCTCACCCTCCCACCCTGCTGGACG 6 98 1 CCCTCCCACC 0.614276 -33 TTTGTGCCTGCGCCCAGGCGTGGAACGGCA 7 37 0 CGCCCAGGCG 0.939118 -264 TCATCGTGTGTCAGCAGGCGAAACCCGCGC 7 118 1 TCAGCAGGCG 0.796636 -183 AGGCGAAACCCGCGCGGACGAGAACTCTTC 7 133 1 CGCGCGGACG 0.88131 -168 CTGGCCTGAGAGGCGCGCCGTGGTATGCGG 7 258 0 AGGCGCGCCG 0.522554 -43 CAGTCTCAGGCGCTGCGACGACACTG 7 285 1 CGCTGCGACG 0.801628 -16 CCGGTCCACCGGGGGCTCCGT 9 2 1 CGGTCCACCG 0.795955 -180 GCTCCGTATACCCGGAAACCGAGATCCGCT 9 25 1 CCCGGAAACC 0.589877 -157 CTACGACACGCCCACCGGCCTTACCTGCCC 10 45 1 CCCACCGGCC 0.872735 -256 ATCCTGGGGACCGTCCAGCGAGTTTCACCA 10 148 0 CCGTCCAGCG 0.848686 -153 TACGGATGTACACGGCGACGACGGTATGGG 10 226 0 CACGGCGACG 0.734832 -75 ACTACTCAACGGCCGCCGAGCGCGTCGG 11 9 1 ACGGCCGCCG 0.920328 -149 ATGCGGTAGCCGAACCGACGCGCTCGGCGG 11 23 0 CGAACCGACG 0.899894 -135 TGGGGTTTTACCGGCTGGCGATGGTTTTCC 11 76 1 CCGGCTGGCG 0.890032 -82 TGTAGCGCGGCGCGGTGCCGGAAAACCATC 11 95 0 CGCGGTGCCG 0.950752 -63 CGCCACCTAGCGAGCCACCGGTATCTCGAA 11 125 0 CGAGCCACCG 0.977715 -33 GGGTTCGAGTCCCTCCGCCCGCACTCCATG 12 53 1 CCCTCCGCCC 0.958399 -248 GCGCTGATACTCAGCCCGCGCATACAACCC 12 150 0 TCAGCCCGCG 0.68308 -151 CGATACCCCGAGCTGCGCCGCGACCGCGCT 12 175 0 AGCTGCGCCG 0.847928 -126 AACGGCGTCGCGCTCCGCCGATACCCCGAG 12 193 0 CGCTCCGCCG 0.929576 -108 GGGTTACCGGCCAACCGGCGTGCAACGGCG 12 216 0 CCAACCGGCG 0.896482 -85 ACTTCTCAGATCGGGCGACCACGAACGCTG 12 245 0 TCGGGCGACC 0.550861 -56 GGTCCTCTCTCGCGGCGGCCTAATCCGCCA 12 277 0 CGCGGCGGCC 0.74953 -24 CCCGGGGAACCCGGGCGCCCCTGGATCCGC 13 20 1 CCGGGCGCCC 0.946963 -67 GCCGATGCCTGCCACAGCCGCGGATCCAGG 13 39 0 GCCACAGCCG 0.58419 -48 GCATCGGCGGCGCTGCGCCGCTATCTACTC 13 61 1 CGCTGCGCCG 0.578047 -26 ACCCCGGAAAGGAGCAGCCG 14 20 1 GGAGCAGCCG 0.847788 -10 CGCAGAATCGCGGTGCACCCACGATTGCCA 15 12 1 CGGTGCACCC 0.46929 -99 TAGGCACGAGTGGGCCCGCGCTACTGGCAA 15 36 0 TGGGCCCGCG 0.814507 -75 TCCGCGCCGGCGACGATGCAGA 17 3 1 CGCGCCGGCG 0.886887 -47 GATGCTAAGGAGCGGCGCCG 17 40 1 AGCGGCGCCG 0.955063 -10 CTCCCACCCGCGAGCAGACGCAAAATCGCC 19 15 1 CGAGCAGACG 0.960561 -82 GGTGGCGGCGCGAGCAGACGCAAAATCGCC 19 63 0 CGAGCAGACG 0.960561 -34 GTCTGCTCGCGCCGCCACCGACAGGGCCGC 19 74 1 GCCGCCACCG 0.9038 -23 TAGCCGCCGTCGGTCAGCCCCGCAGG 20 7 0 CGGTCAGCCC 0.810141 -98 GAGCCGCAGCCGAAGCGACCAAATTCGCGG 21 15 0 CGAAGCGACC 0.503834 -56 ACCTGTCCGACCAGGAGCCGCAGCCGAAGC 21 29 0 CCAGGAGCCG 0.949765 -42 TTGTGGAAGTCGCCGACCCGG 22 2 0 CGCCGACCCG 0.523531 -299 GGCAGCGTCCCGGACCAACGCCAATTGGTC 22 46 0 CGGACCAACG 0.736206 -255 CTGCCACGCTTGAGGCAGCGTCCCGGACCA 22 59 0 TGAGGCAGCG 0.705729 -242 AAGCAAATCCCGCTGCCACGCTTGAGGCAG 22 71 0 CGCTGCCACG 0.531403 -230 GGGATTTGCTTCAGCAGCCCGGTCGCCAGC 22 90 1 TCAGCAGCCC 0.585763 -211 AGCCCGGTCGCCAGCAGCCGCTACTGGTAC 22 105 1 CCAGCAGCCG 0.974128 -196 TACCAACATGCGCGCCGACGTGAGTGGGGT 22 132 1 CGCGCCGACG 0.990742 -169 TGGGGTACCGCCCGGATCCGGCCCGCTGGC 22 156 1 CCCGGATCCG 0.55879 -145 ACGTTCGGAGCCTGCCAGCGGGCCGGATCC 22 169 0 CCTGCCAGCG 0.717334 -132 GCATGGCGTCTGCTCAGCCGTGTGCGGATA 22 236 1 TGCTCAGCCG 0.894218 -65 GACGCTGTGACGCAGCACCGCATCTCGGTT 22 269 1 CGCAGCACCG 0.716578 -32 TACGACACGCTCAACCGAGATGCGGTG 22 284 0 CGCTCAACCG 0.921998 -17 ********** Masking position 9 Map Score: 100.848 Number of sites scoring better than the average of aligned sites = 80671 Number in coding regions = 75469 Number in noncoding regions = 5202 Number of orfs with sites within 600 bp upstream = 1572 Fraction of orfs with sites within 600 bp upstream = 0.25249 Motif number 2 AGCGCACCAAAGCACACCATCAGCCGCCGAAACC 1 35 0 AGCCCTCAGC 0.447984 -139 GAACGGTAACCGAACAGCTGTGGCGTAGTGTGTG 1 87 1 CGACCGTGGC 0.890084 -87 CGGTGAACGTCGCCCTAGCGCGGCAAGGCCAAAA 1 131 0 CGCCGGCGGC 0.99582 -43 CTCATCGCTACGCTCTGCATCGTCGTCGGCGCAG 2 12 0 CGCCCTCGTC 0.973706 -216 CACCCGCTTGCGGGGGAGAGTGGCGCTGATGACC 2 56 1 CGGGGGTGGC 0.979551 -172 TCGTCGTCGGCGCAGGTCATCAGCGCCACTCTCC 2 70 0 CGCGCTCAGC 0.977535 -158 CTCATCGCTACGCTCTGCATCGTCGTCGGCGCAG 2 89 0 CGCCCTCGTC 0.973706 -139 CACCCGCTTGCGGGGGAGAGTGGCGCTGATGACC 2 133 1 CGGGGGTGGC 0.979551 -95 TCGTCGTCGGCGCAGGTCATCAGCGCCACTCTCC 2 147 0 CGCGCTCAGC 0.977535 -81 CTCATCGCTACGCTCTGCATCGTCGTCGGCGCAG 2 166 0 CGCCCTCGTC 0.973706 -62 CACCCGCTTGCGGGGGAGAGTGGCGCTG 2 210 1 CGGGGGTGGC 0.979551 -18 CCCTACCGTCGGAGCCGCACACCGTCACAGCGA 3 34 0 CGGGGACACC 0.493432 -23 AGTGTATTCACGGCGCGCCGTGGATTGAGCGGCA 4 17 1 CGGGCGTGGA 0.673989 -125 TGCCGCGTTCTCCTCGGGCTGCCGATCCG 5 26 0 CGTCCCGGGC 0.743717 -19 CCCGCGCGCACCCCGCGAGCAGACACAGAG 6 7 1 CGCCCCGAGC 0.923239 -124 GACACAGAGTCGCACAAAATCGGCGGTTTTGATG 6 32 1 CGCCATCGGC 0.968131 -99 TCGCCCAGCACGCGACCCGGCGGCTCACCCTCCC 6 81 1 CGCACGCGGC 0.960491 -50 AGGCGTGGAACGGCAGGGATCGTCCGAATAAACG 7 18 0 CGGAGTCGTC 0.579678 -283 TTTGTGCCTGCGCCCAGGCGTGGAACGGCAGGGA 7 33 0 CGCCGGTGGA 0.692343 -268 AGTTCTCGTCCGCGCGGGTTTCGCCTGCTGACAC 7 125 0 CGCCGTTCGC 0.82416 -176 CGGGTTTGTTCGACGAGGTTTAGCCACATCAGCC 7 227 0 CGAGGTTAGC 0.406629 -74 CATACCACGGCGCGCCTCTCAGGCCAGTCTCAGG 7 261 1 CGCCCCAGGC 0.955008 -40 CCGGTCCACCGGGGGCTCCGTATAC 9 2 1 CGGCCGGGGG 0.755154 -180 GGCGGGATGTCGGGCTTCGGCGGTGAGAAAGCGG 9 50 0 CGGCCGCGGT 0.92063 -132 GTGTGGTGTACGGGCAGGTAAGGCCGGTGGGCGT 10 52 0 CGGCGAAGGC 0.654352 -249 TGGTGAAACTCGCTGGACGGTCCCCAGGATGTTG 10 148 1 CGCGCGTCCC 0.671973 -153 GGTCTTGCTCCGGTCATGTCCGGTGAATGTGCTG 10 183 0 CGGCGCCGGT 0.841059 -118 GCCGAACCGACGCGCTCGGCGGCCGTTGAGTAGT 11 11 0 CGCCGCGGCC 0.909531 -147 CCCCAGGATTCGGGACCGATTGGCAACCATGCGG 11 47 0 CGGAGTTGGC 0.759046 -111 TCGAATGTAGCGCGGCGCGGTGCCGGAAAACCAT 11 96 0 CGCGCGTGCC 0.95188 -62 CAAACTCTTTCGAGCACCGGCACCTAAAACCGGC 12 18 0 CGACCGCACC 0.596195 -283 TCCCTCCGCCCGCACTCCATGGTCCCCGAGTTTG 12 62 1 CGCCCTGGTC 0.901201 -239 CGGCCCCAGTCGGACGATCTCGTCCAAACTAAGG 12 113 0 CGGCTTCGTC 0.67719 -188 GCCGCGACCGCGCTGATACTCAGCCCGCGCATAC 12 155 0 CGCGATCAGC 0.83399 -146 AGCGCGGTCGCGGCGCAGCTCGGGGTATCGGCGG 12 175 1 CGGGGTCGGG 0.835811 -126 CTCGGGGTATCGGCGGAGCGCGACGCCGTTGCAC 12 193 1 CGGGGGCGAC 0.767763 -108 ACCGGCCAACCGGCGTGCAACGGCGTCGCGCTCC 12 207 0 CGGGCACGGC 0.960651 -94 GGTAACCCAGCGTTCGTGGTCGCCCGATCTGAGA 12 238 1 CGTCGTCGCC 0.716958 -63 TCTCTCGCGGCGGCCTAATCCGCCACGACTTCTC 12 268 0 CGGCACCGCC 0.857176 -33 CAGCGGTCCTCTCTCGCGGCGGCCTAA 12 284 0 CGGCCCTCGC 0.828522 -17 CACCAAGGCCCGGGGAACCCGGGCGCCCCTGGAT 13 12 1 CGGGCCGGGC 0.97307 -75 GGCGCAGCGCCGCCGATGCCTGCCACAGCCGCGG 13 46 0 CGCGGCTGCC 0.919671 -41 TGCTCCTTTCCGGGGTCAGTTGGCC 14 2 0 CGGGATTGGC 0.859293 -28 CCGCAGAATCGCGGTGCACCCACGA 15 2 1 CGCGTGCGGT 0.457256 -109 AGCATCGCTGCGCTCTGCATCGTCGCCGGCGCGG 17 12 0 CGCCCTCGTC 0.973706 -38 CGGCGCCGCTCCTTAGCATCGCTGCGC 17 33 0 CGCGCTTAGC 0.933282 -17 ACAAAACTGGCGCACCACACGGGCGTTTCTTGCT 18 29 0 CGCCCCGGGC 0.982987 -41 TGCGTCTGCTCGCGGGTGGGAGGCAC 19 3 0 CGCGGGAGGC 0.944843 -94 TCACTGTAGCCGCCGTCGGTCAGCCCCGCAGG 20 9 0 CGCGGTCAGC 0.967344 -96 GGGATCCGAGCGGGCTACTTAGCCTAGGTACGCT 20 50 0 CGGCCTAGCC 0.840704 -55 GCCAATTGGTCGCTCTCCGTCGCCGTTGTGGAAG 22 23 0 CGCCCTCGCC 0.986616 -278 TTCAGCAGCCCGGTCGCCAGCAGCCGCTACTGGT 22 99 1 CGGCCGCAGC 0.982863 -202 AGTGGGGTACCGCCCGGATCCGGCCCGCTGGCAG 22 154 1 CGCCACCGGC 0.964379 -147 GGGGCACGTTCGGAGCCTGCCAGCGGGCCGGATC 22 170 0 CGGGTCCAGC 0.687258 -131 GACGCTGTGACGCAGCACCGCATCTCGGTTGAGC 22 269 1 CGCGCGCATC 0.89067 -32 *** * * ***** Masking position 2 Map Score: 89.2326 Number of sites scoring better than the average of aligned sites = 39542 Number in coding regions = 36797 Number in noncoding regions = 2745 Number of orfs with sites within 600 bp upstream = 1159 Fraction of orfs with sites within 600 bp upstream = 0.186155 Motif number 3 GGCGGTTTCGGCGGCTGATGGTGTGCTTTGGTG 1 32 1 GCGGCTATGG 0.541318 -142 CCTGCGCCGACGACGATGCAGAGCGTAG 2 6 1 GCCGACACGG 0.853747 -222 CCCGCTTGCGGGGGAGAGTGGCGCTGATGACCT 2 58 1 GGGGAGGTGG 0.987797 -170 GATGACCTGCGCCGACGACGATGCAGAGCGTAG 2 83 1 GCCGACACGG 0.853747 -145 CCCGCTTGCGGGGGAGAGTGGCGCTGATGACCT 2 135 1 GGGGAGGTGG 0.987797 -93 GATGACCTGCGCCGACGACGATGCAGAGCGTAG 2 160 1 GCCGACACGG 0.853747 -68 CCCGCTTGCGGGGGAGAGTGGCGCTG 2 212 1 GGGGAGGTGG 0.987797 -16 ACGGCGCGCCGTGGATTGAGCGGCAACGGTCCA 4 26 1 GTGGATGAGG 0.507927 -116 AATCGGATCGGCAGCCCGAGGAGAACGCGGCA 5 23 1 GCAGCCGAGG 0.636056 -22 GTCTGCTCGCGGGGTGCGCGCGGG 6 2 0 GGGGTGGCGG 0.750059 -129 CGGGTCGCGTGCTGGGCGAGCAGACACAGAGTC 6 67 0 GCTGGGGAGG 0.700313 -64 CAGCAGGGTGGGAGGGTGAGCCGCCGGGTCGCG 6 91 0 GGAGGGGAGG 0.461055 -40 GCGCCCAGGCGTGGAACGGCAGGGATCGTCCGA 7 25 0 GTGGAAGGCG 0.345444 -276 ACCAACATTGGTGGAACGTGGTGCACACTGCAC 7 71 1 GTGGAAGTGG 0.795999 -230 ACCCGTCCATGGGGCCAATGTGGCTGATGTGGC 7 206 1 GGGGCCATGG 0.910403 -95 GCGTGGACTGGCATGGGTGTGGCTT 8 29 0 GTGGACGGCG 0.664061 -15 GGGCTTCGGCGGTGAGAAAGCGGATCTCGGTTT 9 40 0 GGTGAGAAGG 0.742269 -142 GGCCTGAAAAGGTGACCGGGCGGGATGTCGGGC 9 69 0 GGTGACGGGG 0.889513 -113 AGGTAAGGCCGGTGGGCGTGTCGTAGCCCAGTA 10 38 0 GGTGGGGTGG 0.793509 -263 CCAACATCCTGGGGACCGTCCAGCGAGTTTCAC 10 150 0 GGGGACGTCG 0.921613 -151 GGTCATGTCCGGTGAATGTGCTGCCAACATCCT 10 173 0 GGTGAAGTGG 0.76517 -128 CGTCGTGGCAGGTGTTGGGCTGATTTT 10 284 0 GTGGCAGTGG 0.715094 -17 CTCAACGGCCGCCGAGCGCGTCGGTTCGGCTAC 11 15 1 GCCGAGGCGG 0.967652 -143 TCGCTAGGTGGCGGAAGGAGGTGGTG 11 142 1 GCGGAAGAGG 0.903096 -16 TGGAGTGCGGGCGGAGGGACTCGAACCCTCAAA 12 48 0 GCGGAGGACG 0.909851 -253 GGTCAAACTCGGGGACCATGGAGTGCGGGCGGA 12 66 0 GGGGACATGG 0.940464 -235 TCCGACTGGGGCCGACTGGGTTGTATGCGCGGG 12 133 1 GCCGACGGGG 0.954981 -168 CAGCGCGGTCGCGGCGCAGCTCGGGGTATCGGC 12 174 1 GCGGCGAGCG 0.659638 -127 CGGGGTATCGGCGGAGCGCGACGCCGTTGCACG 12 195 1 GCGGAGGCGG 0.981617 -106 GGATTAGGCCGCCGCGAGAGAGGACCGCTG 12 281 1 GCCGCGGAGG 0.946632 -20 GCCTGCCACAGCCGCGGATCCAGGGGCGCCCGG 13 30 0 GCCGCGATCG 0.622045 -57 TCCGCGCCGGCGACGATGCAGAGCGCAGCGA 17 9 1 GGCGACATGG 0.898468 -41 CCTGTCGGTGGCGGCGCGAGCAGACGCAAAATC 19 66 0 GCGGCGGAGG 0.969385 -31 AGCGGCTGCTGGCGACCGGGCTGCTGAAGCAAA 22 94 0 GGCGACGGGG 0.954981 -207 CACTCACGTCGGCGCGCATGTTGGTACCAGTAG 22 125 0 GGCGCGATGG 0.889222 -176 CCGCATCTCGGTTGAGCGTGTCGTA 22 286 1 GTTGAGGTGG 0.81419 -15 ****** *** * Masking position 4 Map Score: 61.1404 Number of sites scoring better than the average of aligned sites = 15952 Number in coding regions = 14979 Number in noncoding regions = 973 Number of orfs with sites within 600 bp upstream = 667 Fraction of orfs with sites within 600 bp upstream = 0.107131 Motif number 4 ACAAGTCACACACTACGCCACAGCTGTTCG 1 97 0 CACTACGCCA 0.686791 -77 CATCGCTACGCTCTGCATCGTCGTCGGCGC 2 14 0 CTCTGCATCG 0.942601 -214 GTGGTGCCCCCACCTCATCGCTACGCTCTG 2 29 0 CACCTCATCG 0.969654 -199 CATCGCTACGCTCTGCATCGTCGTCGGCGC 2 91 0 CTCTGCATCG 0.942601 -137 GTGGTGCCCCCACCTCATCGCTACGCTCTG 2 106 0 CACCTCATCG 0.969654 -122 CATCGCTACGCTCTGCATCGTCGTCGGCGC 2 168 0 CTCTGCATCG 0.942601 -60 GTGGTGCCCCCACCTCATCGCTACGCTCTG 2 183 0 CACCTCATCG 0.969654 -45 CGCGAGCAGACACAGAGTCGCACAAAATCG 6 24 1 CACAGAGTCG 0.839979 -107 CACAGAGTCGCACAAAATCGGCGGTTTTGA 6 34 1 CACAAAATCG 0.691303 -97 GGCGAGCAGACACAGAGTCGCATCAAAACC 6 56 0 CACAGAGTCG 0.839979 -75 ACGTGGTGCACACTGCACCTGGGGTTCTGC 7 86 1 CACTGCACCT 0.88477 -215 CCTGCCCGTACACCACACCCCTGGACGTAA 10 68 1 CACCACACCC 0.790137 -233 GACACCAATCCACAGCACCGAGCAGTGACA 10 101 1 CACAGCACCG 0.981228 -200 CAGCGAGTTTCACCACACCTTGGGGCACCT 10 133 0 CACCACACCT 0.865203 -168 GGTTTTCCGGCACCGCGCCGCGCTACATTC 11 98 1 CACCGCGCCG 0.99241 -60 GCATCGGCGGCGCTGCGCCGCTATCTACTC 13 61 1 CGCTGCGCCG 0.8476 -26 GTGCCTACTACACTTCGTCGTAGCCAAATC 15 59 1 CACTTCGTCG 0.939909 -52 CATCGCTGCGCTCTGCATCGTCGCCGGCGC 17 14 0 CTCTGCATCG 0.942601 -36 AAAACTGGCGCACCACACGGGCGTTTCTTG 18 31 0 CACCACACGG 0.747043 -39 GGTGTCACCACATCGGGACAAAACT 18 55 0 CACCACATCG 0.984032 -15 ACACACCACGGCGAGGACGACAA 21 58 0 CACCACGGCG 0.937529 -13 CGGCGACTTCCACAACGGCGACGGAGAGCG 22 17 1 CACAACGGCG 0.851189 -284 GGTGCTGCGTCACAGCGTCAAGTATCCGCA 22 258 0 CACAGCGTCA 0.810158 -43 TGTGACGCAGCACCGCATCTCGGTTGAGCG 22 274 1 CACCGCATCT 0.942696 -27 ********** Masking position 3 Map Score: 40.1236 Number of sites scoring better than the average of aligned sites = 7884 Number in coding regions = 7313 Number in noncoding regions = 571 Number of orfs with sites within 600 bp upstream = 451 Fraction of orfs with sites within 600 bp upstream = 0.0724382 Motif number 5 GATGAGGTGGGGGCACCACCCGCTTGCGGGG 2 40 1 GGGCCCACCC 0.977425 -188 CGCAGGTCATCAGCGCCACTCTCCCCCGCAA 2 63 0 CAGCCCACTC 0.984586 -165 GATGAGGTGGGGGCACCACCCGCTTGCGGGG 2 117 1 GGGCCCACCC 0.977425 -111 CGCAGGTCATCAGCGCCACTCTCCCCCGCAA 2 140 0 CAGCCCACTC 0.984586 -88 GATGAGGTGGGGGCACCACCCGCTTGCGGGG 2 194 1 GGGCCCACCC 0.977425 -34 CAGCGCCACTCTCCCCCGCAA 2 217 0 CAGCCCACTC 0.984586 -11 CCTACCGTCGGAGCCGCACACCGTCACAGCG 3 35 0 GAGCGCACAC 0.926613 -22 GCACGCGACCCGGCGGCTCACCCTCCCACCC 6 88 1 CGGCGCTCAC 0.766607 -43 CACACGATGAGGGCAGAACCCCAGGTGCAGT 7 97 0 GGGCGAACCC 0.908972 -204 TTCCGCCAAGCAGCACAAATCGCCCTACTCT 7 160 1 CAGCCAAATC 0.303876 -141 TGACCAAAATCAGCCCAACACCTGCCACGAC 10 279 1 CAGCCAACAC 0.828474 -22 GATGGTTTTCCGGCACCGCGCCGCGCTACAT 11 95 1 CGGCCCGCGC 0.928013 -63 CGAGTCCCTCCGCCCGCACTCCATGGTCCCC 12 58 1 CGCCGCACTC 0.84043 -243 ACAACCCAGTCGGCCCCAGTCGGACGATCTC 12 126 0 CGGCCCAGTC 0.948833 -175 AGCGCGGTCGCGGCGCAGCTCGGGGTATCGG 12 175 1 CGGCCAGCTC 0.813826 -126 GCCGCGGATCCAGGGGCGCCCGGGTTCCCCG 13 22 0 CAGGGCGCCC 0.773748 -65 CCGCAGAATCGCGGTGCACCCACGATTGCCA 15 11 1 GCGGGCACCC 0.736437 -100 GCCAGTAGCGCGGGCCCACTCGTGCCTACTA 15 38 1 CGGGCCACTC 0.9643 -73 CGGCGCCGCTCCTTAGCATCG 17 39 0 CGGCCCGCTC 0.88168 -11 GACAAAACTGGCGCACCACACGGGCGTTTCT 18 33 0 GCGCCCACAC 0.903961 -37 GTCCGACCAGGAGCCGCAGCCGAAGCGACCA 21 24 0 GAGCGCAGCC 0.817031 -47 GGCCGGATCCGGGCGGTACCCCACTCACGTC 22 148 0 GGGCGTACCC 0.600016 -153 **** ****** Masking position 11 Map Score: 40.7593 Number of sites scoring better than the average of aligned sites = 5276 Number in coding regions = 4865 Number in noncoding regions = 411 Number of orfs with sites within 600 bp upstream = 319 Fraction of orfs with sites within 600 bp upstream = 0.0512367 Motif number 6 AGCGATGAGGTGGGGGCACCACCCGCTTGCGGG 2 37 1 TGGGGGCACC 0.998111 -191 AGCGATGAGGTGGGGGCACCACCCGCTTGCGGG 2 114 1 TGGGGGCACC 0.998111 -114 AGCGATGAGGTGGGGGCACCACCCGCTTGCGGG 2 191 1 TGGGGGCACC 0.998111 -37 GTTCCACGCCTGGGCGCAGGCACAAACCGCACC 7 41 1 TGGGCGCAGC 0.955385 -260 TGACACACGATGAGGGCAGAACCCCAGGTGCAG 7 98 0 TGAGGGCAGC 0.958678 -203 TCACCACACCTTGGGGCACCTTCTGTCACTGCT 10 121 0 TTGGGGCACC 0.993457 -180 CCCAGGATGTTGGCAGCACATTCACCGGACATG 10 170 1 TGGCAGCACC 0.899452 -131 CTGGCAATCGTGGGTGCACCGCGATTCTGCGG 15 10 0 TGGGTGCACG 0.890663 -101 TCTTGCTTGATTAGGGCAAATACCC 18 3 0 TTAGGGCAAC 0.626656 -67 GCCCTGTCGGTGGCGGCGCGAGCAGACGCAAAA 19 68 0 TGGCGGCGCC 0.951195 -29 CATCCTTCTTTGGGGGCTCACAGGGATCCGAGC 20 73 0 TGGGGGCTCG 0.922927 -32 GCTGCCACGCTTGAGGCAGCGTCCCGGACCAAC 22 57 0 TTGAGGCAGC 0.805939 -244 GAAACCCGATTTGGGGCACGTTCGGAGCCTGCC 22 183 0 TTGGGGCACC 0.993457 -118 ********* * Masking position 1 Map Score: 23.9208 Number of sites scoring better than the average of aligned sites = 451 Number in coding regions = 398 Number in noncoding regions = 53 Number of orfs with sites within 600 bp upstream = 54 Fraction of orfs with sites within 600 bp upstream = 0.00867331 Motif number 7 TCGCCCTAGCGCGGCAAGGCCAAAATCGGAC 1 125 0 GCGGCAAGCC 0.923887 -49 CGATGAGGTGGGGGCACCACCCGCTTGCGGG 2 39 1 GGGGCACCCC 0.990087 -189 CGATGAGGTGGGGGCACCACCCGCTTGCGGG 2 116 1 GGGGCACCCC 0.990087 -112 CGATGAGGTGGGGGCACCACCCGCTTGCGGG 2 193 1 GGGGCACCCC 0.990087 -35 GTGACGGTGTGCGGCTCCGACGGTAGGG 3 39 1 GCGGCTCCAC 0.815434 -18 ACGCGACCCGGCGGCTCACCCTCCCACCCTG 6 90 1 GCGGCTCACC 0.815155 -41 CGGTCCACCGGGGGCTCCGTATACCCGGAAA 9 12 1 GGGGCTCCTA 0.677621 -170 ACCACACCTTGGGGCACCTTCTGTCACTGCT 10 121 0 GGGGCACCTC 0.98783 -180 CCAACATCCTGGGGACCGTCCAGCGAGTTTC 10 152 0 GGGGACCGCC 0.613835 -149 CAGGATGTTGGCAGCACATTCACCGGACATG 10 172 1 GCAGCACATC 0.602986 -129 GGACATGACCGGAGCAAGACCGGACATCCTC 10 196 1 GGAGCAAGCC 0.84998 -105 ACCCCGAGCTGCGCCGCGACCGCGCTGATAC 12 170 0 GCGCCGCGCC 0.784839 -131 AGTAGATAGCGGCGCAGCGCCGCCGATGCCT 13 59 0 GGCGCAGCCC 0.553867 -28 GCAGAATCGCGGTGCACCCACGATTGCCAGT 15 13 1 GGTGCACCAC 0.666029 -98 GCGATGCTAAGGAGCGGCGCCG 17 38 1 GGAGCGGCCC 0.526873 -12 GGACAAAACTGGCGCACCACACGGGCGTTTC 18 34 0 GGCGCACCCA 0.846249 -36 CCTGTCGGTGGCGGCGCGAGCAGACGCAAAA 19 68 0 GCGGCGCGGC 0.747466 -29 GCAGCGTCCCGGACCAACGCCAATTGGTCGC 22 44 0 GGACCAACCC 0.520952 -257 TGCCACGCTTGAGGCAGCGTCCCGGACCAAC 22 57 0 GAGGCAGCTC 0.488475 -244 ATTTGCTTCAGCAGCCCGGTCGCCAGCAGCC 22 93 1 GCAGCCCGTC 0.642864 -208 CGACGTGAGTGGGGTACCGCCCGGATCCGGC 22 147 1 GGGGTACCCC 0.919439 -154 AACCCGATTTGGGGCACGTTCGGAGCCTGCC 22 183 0 GGGGCACGTC 0.979814 -118 ACGCTGTGACGCAGCACCGCATCTCGGTTGA 22 270 1 GCAGCACCCA 0.848751 -31 ******** ** Masking position 1 Map Score: 29.1141 Number of sites scoring better than the average of aligned sites = 8516 Number in coding regions = 7832 Number in noncoding regions = 684 Number of orfs with sites within 600 bp upstream = 503 Fraction of orfs with sites within 600 bp upstream = 0.0807902 Motif number 8 GGTGTGCTTTGGTGCGCTGTTTGCCAAACAG 1 51 1 GGGCGCTGTT 0.958365 -123 GATGCAGAGCGTAGCGATGAGGTGGGGGCAC 2 25 1 GTGCGATGAG 0.978866 -203 GCGGGGGAGAGTGGCGCTGATGACCTGCGCC 2 65 1 GTGCGCTGAT 0.983724 -163 GATGCAGAGCGTAGCGATGAGGTGGGGGCAC 2 102 1 GTGCGATGAG 0.978866 -126 GCGGGGGAGAGTGGCGCTGATGACCTGCGCC 2 142 1 GTGCGCTGAT 0.983724 -86 GATGCAGAGCGTAGCGATGAGGTGGGGGCAC 2 179 1 GTGCGATGAG 0.978866 -49 CTCAATCCACGGCGCGCCGTGAATACACTCG 4 15 0 GGGCGCCGTG 0.942136 -127 TGGCCTGAGAGGCGCGCCGTGGTATGCGGGT 7 256 0 GGGCGCCGTG 0.942136 -45 CGTGGCAGGTGTTGGGCTGATTTTGGTCAAC 10 277 0 GTGGGCTGAT 0.903176 -24 TATCTCGAATGTAGCGCGGCGCGGTGCCGGA 11 103 0 GTGCGCGGCG 0.950275 -55 GGGTTGTATGCGCGGGCTGAGTATCAGCGCG 12 150 1 CGGGGCTGAG 0.602106 -151 CTGCGCCGCGACCGCGCTGATACTCAGCCCG 12 162 0 ACGCGCTGAT 0.656577 -139 GTGCAACGGCGTCGCGCTCCGCCGATACCCC 12 196 0 GTGCGCTCCG 0.911217 -105 GCAGGCATCGGCGGCGCTGCGCCGCTATCTA 13 57 1 GCGCGCTGCG 0.98653 -30 GATGCAGAGCGCAGCGATGCTAAGGAGCGGC 17 25 1 GCGCGATGCT 0.889922 -25 CGCCAGTTTTGTCCCGATGTGGTGACACC 18 51 1 GTCCGATGTG 0.653009 -19 ** ******** Masking position 6 Map Score: 22.5463 Number of sites scoring better than the average of aligned sites = 5234 Number in coding regions = 4827 Number in noncoding regions = 407 Number of orfs with sites within 600 bp upstream = 334 Fraction of orfs with sites within 600 bp upstream = 0.053646 Motif number 9 GATGAGGTGGGGGCACCACCCGCTTGCGGG 2 40 1 GGGCACCACC 0.994588 -188 GATGAGGTGGGGGCACCACCCGCTTGCGGG 2 117 1 GGGCACCACC 0.994588 -111 GATGAGGTGGGGGCACCACCCGCTTGCGGG 2 194 1 GGGCACCACC 0.994588 -34 CTGTGACGGTGTGCGGCTCCGACGGTAGGG 3 37 1 GTGCGGCTCC 0.476746 -20 CCCGCGCGCACCCCGCGAGCAGACA 6 6 1 GCGCACCCCG 0.922927 -125 CAGGTGCAGTGTGCACCACGTTCCACCAAT 7 77 0 GTGCACCACG 0.93096 -224 CACACGATGAGGGCAGAACCCCAGGTGCAG 7 98 0 GGGCAGAACC 0.826232 -203 CCACACCTTGGGGCACCTTCTGTCACTGCT 10 121 0 GGGCACCTTC 0.954043 -180 CCAACATCCTGGGGACCGTCCAGCGAGTTT 10 153 0 GGGGACCGTC 0.861057 -148 GATGGTTTTCCGGCACCGCGCCGCGCTACA 11 95 1 CGGCACCGCG 0.868547 -63 GGTCAAACTCGGGGACCATGGAGTGCGGGC 12 69 0 GGGGACCATG 0.70528 -232 CGCGGTCGCGGCGCAGCTCGGGGTATCGGC 12 177 1 GCGCAGCTCG 0.887309 -124 GTAGATAGCGGCGCAGCGCCGCCGATGCCT 13 59 0 GCGCAGCGCC 0.975195 -28 GCAATCGTGGGTGCACCGCGATTCTGCGG 15 10 0 GTGCACCGCG 0.942489 -101 GACAAAACTGGCGCACCACACGGGCGTTTC 18 34 0 GCGCACCACA 0.783194 -36 GCCACCGACAGGGCCGCGCC 19 87 1 GGGCCGCGCC 0.960938 -10 AGCCGCCGTCGGTCAGCCCCGCAGG 20 6 0 GGTCAGCCCC 0.641195 -99 GACGTGAGTGGGGTACCGCCCGGATCCGGC 22 148 1 GGGTACCGCC 0.91382 -153 GCCTGCCAGCGGGCCGGATCCGGGCGGTAC 22 160 0 GGGCCGGATC 0.364335 -141 ACCCGATTTGGGGCACGTTCGGAGCCTGCC 22 183 0 GGGCACGTTC 0.72563 -118 ********** Masking position 3 Map Score: 27.7839 Number of sites scoring better than the average of aligned sites = 7576 Number in coding regions = 7090 Number in noncoding regions = 486 Number of orfs with sites within 600 bp upstream = 417 Fraction of orfs with sites within 600 bp upstream = 0.0669772 Motif number 10 CATCAGCCGCCGAAACCGCCGGCAGGTGGG 1 22 0 CGAAACCGCC 0.965619 -152 GCGGCAAGGCCAAAATCGGACAAGTCACAC 1 116 0 CAAAATCGGA 0.882521 -58 GAAAATCCTACAAATCCGGTGAACGTCGCC 1 151 0 CAAATCCGGT 0.833217 -23 AGAGTCGCATCAAAACCGCCGATTTTGTGC 6 43 0 CAAAACCGCC 0.990532 -88 TGTCAGCAGGCGAAACCCGCGCGGACGAGA 7 126 1 CGAAACCCGC 0.930757 -175 GACCACCAAACAAAACCCGTCCATGGGGCC 7 192 1 CAAAACCCGT 0.874324 -109 CCTCGTCGAACAAACCCGCATACCACGGCG 7 243 1 CAAACCCGCA 0.810524 -58 ATGACCGGAGCAAGACCGGACATCCTCCCA 10 200 1 CAAGACCGGA 0.814685 -101 CTGGGTTGACCAAAATCAGCCCAACACCTG 10 273 1 CAAAATCAGC 0.675244 -28 CGCCAGCCGGTAAAACCCCAGGATTCGGGA 11 66 0 TAAAACCCCA 0.503292 -92 CACCGGCACCTAAAACCGGCATGTTTG 12 8 0 TAAAACCGGC 0.930276 -293 TCGCGGCGGCCTAATCCGCCACGACTTCTC 12 268 0 CTAATCCGCC 0.734659 -33 CACATCGGGACAAAACTGGCGCACCACACG 18 42 0 CAAAACTGGC 0.876057 -28 CGAGCAGACGCAAAATCGCCCATTTTCATG 19 25 1 CAAAATCGCC 0.957755 -72 CGAGCAGACGCAAAATCGCCCTTTTCGTCA 19 53 0 CAAAATCGCC 0.957755 -44 GCTGCTGAAGCAAATCCCGCTGCCACGCTT 22 78 0 CAAATCCCGC 0.930861 -223 ********** Masking position 3 Map Score: 16.3273 Number of sites scoring better than the average of aligned sites = 1987 Number in coding regions = 1823 Number in noncoding regions = 164 Number of orfs with sites within 600 bp upstream = 123 Fraction of orfs with sites within 600 bp upstream = 0.0197559 Motif number 11 CGCACCAAAGCACACCATCAGCCGCCGAAAC 1 36 0 CACCCATCAG 0.849224 -138 GCCACTCTCCCCCGCAAGCGGGTGGTGCCCC 2 49 0 CCCCAAGCGG 0.973627 -179 GTCGTCGGCGCAGGTCATCAGCGCCACTCTC 2 71 0 CAGTCATCAG 0.592768 -157 GCCACTCTCCCCCGCAAGCGGGTGGTGCCCC 2 126 0 CCCCAAGCGG 0.973627 -102 GTCGTCGGCGCAGGTCATCAGCGCCACTCTC 2 148 0 CAGTCATCAG 0.592768 -80 GCCACTCTCCCCCGCAAGCGGGTGGTGCCCC 2 203 0 CCCCAAGCGG 0.973627 -25 GCGAGGTAGACAGATCAGGAGAAAGCG 3 7 0 CAGTCAGGAG 0.754525 -50 CCGCGCGCACCCCGCGAGCAGACACAGAGTC 6 12 1 CCCCGAGCAG 0.959955 -119 TGCCTGATTACCGTCCAGCAGGGTGGGAGGG 6 108 0 CCGCCAGCAG 0.995487 -23 GAGAACTCTTCCGCCAAGCAGCACAAATCGC 7 152 1 CCGCAAGCAG 0.984584 -149 CAAACAAAACCCGTCCATGGGGCCAATGTGG 7 198 1 CCGCCATGGG 0.943149 -103 GTGTCAAGTTACGTCCAGGGGTGTGGTGTAC 10 75 0 ACGCCAGGGG 0.80863 -226 ATCCTGGGGACCGTCCAGCGAGTTTCACCAC 10 147 0 CCGCCAGCGA 0.9148 -154 CCAACTGACCCCGGAAAGGAGCAGCCG 14 13 1 CCGAAAGGAG 0.589388 -17 GTGCCTCCCACCCGCGAGCAGACGCAAAATC 19 11 1 CCCCGAGCAG 0.959955 -86 CGCCGTCGGTCAGCCCCGCAGG 20 2 0 CAGCCCGCAG 0.859841 -103 GACAACCTGTCCGACCAGGAGCCGCAGCCGA 21 32 0 CCGCCAGGAG 0.988496 -39 ACGTTCGGAGCCTGCCAGCGGGCCGGATCCG 22 168 0 CCTCCAGCGG 0.942828 -133 *** ******* Masking position 7 Map Score: 29.3657 Number of sites scoring better than the average of aligned sites = 7353 Number in coding regions = 6859 Number in noncoding regions = 494 Number of orfs with sites within 600 bp upstream = 407 Fraction of orfs with sites within 600 bp upstream = 0.065371 Motif number 12 CGCCCTAGCGCGGCAAGGCCAAAATCGGACA 1 124 0 CGGCAGGCCA 0.703264 -50 CCTGCGCCGACGACGATGCAGAGCG 2 5 1 CGCCACGACG 0.875809 -223 TGATGACCTGCGCCGACGACGATGCAGAGCG 2 82 1 CGCCACGACG 0.875809 -146 TGATGACCTGCGCCGACGACGATGCAGAGCG 2 159 1 CGCCACGACG 0.875809 -69 TGACGGTGTGCGGCTCCGACGGTAGGG 3 40 1 CGGCCCGACG 0.94995 -17 TGTGTCTGCTCGCCCAGCACGCGACCCGGCG 6 72 1 CGCCAGCACG 0.924932 -59 GTCTCAGGCGCTGCGACGACACTG 7 287 1 CTGCACGACA 0.905472 -14 GCGGGATGTCGGGCTTCGGCGGTGAGAAAGC 9 52 0 GGGCTCGGCG 0.800425 -130 CTCAAGTCCTGTGCAAGCGCACATGCAGTTG 9 148 0 GTGCAGCGCA 0.389138 -34 GCCCACTACTGGGCTACGACACGCCCACCGG 10 32 1 GGGCACGACA 0.908613 -269 CGGATGTACACGGCGACGACGGTATGGGAGG 10 223 0 CGGCACGACG 0.979858 -78 AACCCAGCACCTGCCAGGACGGGCTACGGAT 10 249 0 CTGCAGGACG 0.965608 -52 AGCCCAACACCTGCCACGACG 10 290 1 CTGCACGACG 0.983165 -11 ACTCAACGGCCGCCGAGCGCGTCGGTTCGGC 11 14 1 CGCCAGCGCG 0.909638 -144 CGCGTCGGTTCGGCTACCGCATGGTTGCCAA 11 31 1 CGGCACCGCA 0.949919 -127 CCGAGCTGCGCCGCGACCGCGCTGATACTCA 12 167 0 CCGCACCGCG 0.890495 -134 GCCAACCGGCGTGCAACGGCGTCGCGCTCCG 12 206 0 GTGCACGGCG 0.949179 -95 TTCTCAGATCGGGCGACCACGAACGCTGGGT 12 242 0 GGGCACCACG 0.964778 -59 CCGACTGATTTGGCTACGACGAAGTGTAGTA 15 64 0 TGGCACGACG 0.905115 -47 TCCGCGCCGGCGACGATGCAGAGCGCAG 17 8 1 CGGCACGATG 0.938246 -42 TGACCGACGGCGGCTACAGTGACTGCAAGAG 20 21 1 CGGCACAGTG 0.607564 -84 GCTACAGTGACTGCAAGAGCGTACCTAGGCT 20 33 1 CTGCAGAGCG 0.742091 -72 ACACACCACGGCGAGGACGACAACCTGTC 21 52 0 CGGCAGGACG 0.975181 -19 ACTTCCACAACGGCGACGGAGAGCGACCAAT 22 22 1 CGGCACGGAG 0.824288 -279 CGTTCGGAGCCTGCCAGCGGGCCGGATCCGG 22 167 0 CTGCAGCGGG 0.45073 -134 **** ****** Masking position 4 Map Score: 54.5808 Number of sites scoring better than the average of aligned sites = 20675 Number in coding regions = 19770 Number in noncoding regions = 905 Number of orfs with sites within 600 bp upstream = 589 Fraction of orfs with sites within 600 bp upstream = 0.0946033 Motif number 13 ACAGCTGTTCGGTTACCGTTCACATGCTGTT 1 77 0 GGTTACCGTC 0.979419 -97 CAGCTTGGACCGTTGCCGCTCAATCCACGGC 4 33 0 CGTTGCCGTC 0.917714 -109 GTTCTCCTCGGGCTGCCGATCCGATTAACTA 5 18 0 GGCTGCCGTC 0.947167 -27 TTTGCCTGATTACCGTCCAGCAGGGTGG 6 113 0 GATTACCGCC 0.948504 -18 GGCCTGAAAAGGTGACCGGGCGGGATGTCGG 9 71 0 GGTGACCGGC 0.97495 -111 AGGATCACGCGATGACCGCCCACTACTGGGC 10 15 1 GATGACCGCC 0.957232 -286 CCAACATCCTGGGGACCGTCCAGCGAGTTTC 10 152 0 GGGGACCGCC 0.976876 -149 GGTATGGGAGGATGTCCGGTCTTGCTCCGGT 10 203 0 GATGTCCGTC 0.583745 -98 GCAACCATGCGGTAGCCGAACCGACGCGCTC 11 28 0 GGTAGCCGAC 0.723137 -130 GCTACCGCATGGTTGCCAATCGGTCCCGAAT 11 43 1 GGTTGCCATC 0.766492 -115 ACGAACGCTGGGTTACCGGCCAACCGGCGTG 12 224 0 GGTTACCGCC 0.991625 -77 ACCCAGCGTTCGTGGTCGCCCGATCTGAGAA 12 242 1 CGTGGTCGCC 0.77291 -59 TGGTCGGACAGGTTGTCGTCCTCGCCGTGGT 21 46 1 GGTTGTCGCC 0.943372 -25 CCGTTGTGGAAGTCGCCGACCCGG 22 4 0 AGTCGCCGCC 0.701953 -297 AGCGGCTGCTGGCGACCGGGCTGCTGAAGCA 22 96 0 GGCGACCGGC 0.91868 -205 GACGTGAGTGGGGTACCGCCCGGATCCGGCC 22 148 1 GGGTACCGCC 0.971945 -153 ******** ** Masking position 7 Map Score: 19.7698 Number of sites scoring better than the average of aligned sites = 5759 Number in coding regions = 5372 Number in noncoding regions = 387 Number of orfs with sites within 600 bp upstream = 342 Fraction of orfs with sites within 600 bp upstream = 0.0549309 Motif number 14 GCCGAAACCGCCGGCAGGTGGGATCTCAAACA 1 12 0 CCGCAGGTGG 0.980928 -162 TGTTTGCCAAACAGCATGTGAACGGTAACCGA 1 68 1 ACGCATGTGA 0.727053 -106 GCCACTCTCCCCCGCAAGCGGGTGGTGCCCCC 2 48 0 CCGCAAGCGG 0.584383 -180 GCCACTCTCCCCCGCAAGCGGGTGGTGCCCCC 2 125 0 CCGCAAGCGG 0.584383 -103 GCCACTCTCCCCCGCAAGCGGGTGGTGCCCCC 2 202 0 CCGCAAGCGG 0.584383 -26 TGATTACCGTCCAGCAGGGTGGGAGGGTGAGC 6 103 0 CCGCAGGGTG 0.943469 -28 GCGTGGACTGGCATGGGTGTGGCTTTCAA 8 25 0 CTGCATGGGG 0.897751 -19 TCCCGTGACAACTGCATGTGCGCTTGCACAGG 9 140 1 ACGCATGTGG 0.97762 -42 TGGACGGTCCCCAGGATGTTGGCAGCACATTC 10 161 1 CCGGATGTTG 0.805148 -140 CACGGCGACGACGGTATGGGAGGATGTCCGGT 10 214 0 ACGTATGGGG 0.757443 -87 CGGTTCGGCTACCGCATGGTTGCCAATCGGTC 11 36 1 ACGCATGGTG 0.943499 -122 GCACCTAAAACCGGCATGTTTG 12 1 0 CCGCATGTTG 0.977229 -300 GGCTACAGTGACTGCAAGAGCGTACCTAGGCT 20 32 1 ACGCAAGAGG 0.824929 -73 CTCACGTCGGCGCGCATGTTGGTACCAGTAGC 22 124 0 CGGCATGTTG 0.537191 -177 ** ******* * Masking position 6 Map Score: 19.3405 Number of sites scoring better than the average of aligned sites = 1505 Number in coding regions = 1338 Number in noncoding regions = 167 Number of orfs with sites within 600 bp upstream = 127 Fraction of orfs with sites within 600 bp upstream = 0.0203983 Motif number 15 ACAGTCTGCCAGGAATCGCCAAATCAGCTT 4 58 0 AGGAATCGCC 0.923916 -84 AACCTCGTCGAACAAACCCGCATACCACGG 7 241 1 AACAAACCCG 0.831328 -60 TGAAAAATTTATGAATCCCGTGACAACTGC 9 125 1 ATGAATCCCG 0.967504 -57 CCGCAGAATCGCGGTGCACCCAC 15 4 1 CAGAATCGCG 0.82937 -107 TGCGGTGAGAGGAATCCCGGCTGAC 16 10 1 AGGAATCCCG 0.969532 -16 CTAATCAAGCAAGAAACGCCCGTGTGGTGC 18 22 1 AAGAAACGCC 0.918369 -48 CCAAAGAAGGATGAAAGCCCCT 20 93 1 ATGAAAGCCC 0.751823 -12 TGTGCGCGCTATGAAACCCGATTTGGGGCA 22 198 0 ATGAAACCCG 0.96751 -103 ********** Masking position 5 Map Score: 0.934142 Number of sites scoring better than the average of aligned sites = 350 Number in coding regions = 323 Number in noncoding regions = 27 Number of orfs with sites within 600 bp upstream = 26 Fraction of orfs with sites within 600 bp upstream = 0.00417604