AlignACE version 2.2 July 7, 1998 alignACE -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -icpxR_mtub_opreg_300.orf -g0.656 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.656 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 Rv0488 300 hypothetical protein Rv0488 #2 gpm 156 gpm #3 senX3 173 senX3 #4 regX3 227 regX3 #5 tcrA 56 tcrA #6 phoP 141 phoP #7 phoR 44 phoR #8 Rv0903c 130 hypothetical protein Rv0903c #9 accD3 26 accD3 #10 Rv0981 300 hypothetical protein Rv0981 #11 Rv0983 43 hypothetical protein Rv0983 #12 Rv1033c 181 hypothetical protein Rv1033c #13 Rv1034c 67 hypothetical protein Rv1034c #14 Rv1035c 33 hypothetical protein Rv1035c #15 Rv1036c 110 hypothetical protein Rv1036c #16 Rv1037c 26 hypothetical protein Rv1037c #17 Rv1038c 145 hypothetical protein Rv1038c #18 PPE 76 PPE #19 PE 300 PE #20 Rv1200 300 hypothetical protein Rv1200 #21 sigE 262 sigE #22 Rv1222 157 hypothetical protein Rv1222 #23 Rv1348 300 hypothetical protein Rv1348 #24 cydD 86 cydD #25 cydB 29 cydB #26 appC 110 appC #27 Rv1624c 28 hypothetical protein Rv1624c #28 Rv1625c 300 hypothetical protein Rv1625c #29 Rv2723 25 hypothetical protein Rv2723 #30 mtrB 49 mtrB #31 mtrA 69 mtrA #32 tmk 96 tmk #33 sahH 104 sahH #34 Rv3252c 108 hypothetical protein Rv3252c #35 Rv3253c 90 hypothetical protein Rv3253c #36 Rv3764c 70 hypothetical protein Rv3764c #37 Rv3765c 300 hypothetical protein Rv3765c Motif number 1 GCGCAGCGCGATGAGAAGGA 1 1 1 GCGCAGCGCG 0.960933 -300 CGACCTAACCGCCCAACTCCTTCTCATCGC 1 18 0 GCCCAACTCC 0.588063 -283 GTTAGGTCGAGCCCGACGACGATGCAGAGC 1 39 1 GCCCGACGAC 0.867234 -262 GATGCAGAGCGCGCAGCGCGATGAGAAGGA 1 59 1 GCGCAGCGCG 0.960933 -242 CGACCTAACCGCCCAACTCCTTCTCATCGC 1 76 0 GCCCAACTCC 0.588063 -225 GTTAGGTCGAGCCCGACGACGATGCAGAGC 1 97 1 GCCCGACGAC 0.867234 -204 GATGCAGAGCGCGCAGCGCGATGAGAAATA 1 117 1 GCGCAGCGCG 0.960933 -184 CAGCCCATCACCGGCGGGCGTCTTGACCTC 1 156 0 CCGGCGGGCG 0.95885 -145 ATTTCTGAGTCCGGAACGGGGTGAGCGCCA 1 187 0 CCGGAACGGG 0.674879 -114 ACGGTGCCGACCACCTCGGCGGTATGAACG 2 57 1 CCACCTCGGC 0.574472 -100 TCGGTCCGCTGCGCAGCGCGTTCATACCGC 2 75 0 GCGCAGCGCG 0.960933 -82 CTCACGCACTCCCGCACTCCTCATCGTGGA 2 125 0 CCCGCACTCC 0.871289 -32 CGCCCTAGCGCGGCAAGGCCAAAATCGGAC 3 125 0 CGGCAAGGCC 0.724435 -49 CGGTGAACGTCGCCCTAGCGCGGCAAGGCC 3 135 0 CGCCCTAGCG 0.708065 -39 CCTGCGCCGACGACGATGCAGAGC 4 5 1 CGCCGACGAC 0.795516 -223 GCCACTCTCCCCCGCAAGCGGGTGGTGCCC 4 50 0 CCCGCAAGCG 0.941261 -178 TGATGACCTGCGCCGACGACGATGCAGAGC 4 82 1 CGCCGACGAC 0.795516 -146 GCCACTCTCCCCCGCAAGCGGGTGGTGCCC 4 127 0 CCCGCAAGCG 0.941261 -101 TGATGACCTGCGCCGACGACGATGCAGAGC 4 159 1 CGCCGACGAC 0.795516 -69 GCCACTCTCCCCCGCAAGCGGGTGGTGCCC 4 204 0 CCCGCAAGCG 0.941261 -24 GCCGCTCAATCCACGGCGCGCCGTGAATAC 6 20 0 CCACGGCGCG 0.973637 -122 CGGATCGGCAGCCCGAGGAGAACGCGGCA 7 26 1 GCCCGAGGAG 0.668764 -19 CCCGCGCGCACCCCGCGAGC 8 1 1 CCCGCGCGCA 0.811792 -130 CCGCGCGCACCCCGCGAGCAGACACAGAGT 8 12 1 CCCGCGAGCA 0.763799 -119 GTCTGCTCGCCCAGCACGCGACCCGGCGGC 8 75 1 CCAGCACGCG 0.94498 -56 TTTGTGCCTGCGCCCAGGCGTGGAACGGCA 10 37 0 CGCCCAGGCG 0.69562 -264 GCAGGCGAAACCCGCGCGGACGAGAACTCT 10 131 1 CCCGCGCGGA 0.473429 -170 GAGAACTCTTCCGCCAAGCAGCACAAATCG 10 152 1 CCGCCAAGCA 0.836015 -149 AACCCGCATACCACGGCGCGCCTCTCAGGC 10 255 1 CCACGGCGCG 0.973637 -46 CAGTGTCGTCGCAGCGCCTGAGACTGGC 10 283 0 TCGCAGCGCC 0.732788 -18 CCGGTCCACCGGGGGCTCCGTATAC 12 6 1 CCACCGGGGG 0.510654 -176 GCTTTCTCACCGCCGAAGCCCGACATCCCG 12 52 1 CGCCGAAGCC 0.81792 -130 GCCGGTCGAGTTTGAGCACA 13 1 1 GCCGGTCGAG 0.481697 -67 TCGAGTTTGAGCACAAGGCCCAGGTCGTCG 13 16 1 GCACAAGGCC 0.534019 -52 GCTGGCTTAAGGCCCGCGCCGTCAATTACA 15 12 1 GGCCCGCGCC 0.547442 -99 CCCGGCCCGACGACTCAGGAGGAC 16 5 1 GCCCGACGAC 0.867234 -22 CATAACCTGTCCGCCACGCGGCCACCACCG 17 65 1 CCGCCACGCG 0.994148 -81 CACGCGGCCACCACCGCGCCGATCACAGCC 17 79 1 CCACCGCGCC 0.939326 -67 CGGCTCTTTCGCACCTGGCG 19 1 0 GCACCTGGCG 0.595201 -300 TAGAATCCGCGCGCCGCGCGTCTCATTTGT 19 40 1 GCGCCGCGCG 0.989482 -261 TGATCTGGTGCCCGGGCTAGCACACTTCGG 19 73 0 CCCGGGCTAG 0.574645 -228 GCCATGTCAGCCGCCAAGACCTTGTTAAGG 19 107 1 CCGCCAAGAC 0.887044 -194 TAACGCTAACCGGCCAAGCCTCCACAGTCG 19 194 0 CGGCCAAGCC 0.909853 -107 TGAAACCTGCCGGCCGCTAGCACCCCGGGC 19 264 0 CGGCCGCTAG 0.62397 -37 ACGCGATGACCGCCCACTACTGGGCTACGA 20 21 1 CGCCCACTAC 0.455268 -280 GCAGGTAAGGCCGGTGGGCGTGTCGTAGCC 20 43 0 CCGGTGGGCG 0.511016 -258 CCAATCCACAGCACCGAGCAGTGACAGAAG 20 105 1 GCACCGAGCA 0.4804 -196 CGGATGTACACGGCGACGACGGTATGGGAG 20 224 0 CGGCGACGAC 0.822788 -77 CCAGCACCTGCCAGGACGGGCTACGGATGT 20 247 0 CCAGGACGGG 0.580239 -54 GCCTGCCCGACGGCGTCGCCAATTGGACAT 21 49 0 CGGCGTCGCC 0.866384 -214 GCGACGCCGTCGGGCAGGCGCGCCTGGTTC 21 60 1 CGGGCAGGCG 0.860702 -203 GTTCGAACGCCGGCCGAGCACCGAGCTGGA 21 86 1 CGGCCGAGCA 0.679422 -177 GTCGGGTACAGCCGCAAGCGTCCAGCTCGG 21 106 0 GCCGCAAGCG 0.87618 -157 GCGGCTGTACCCGACACGCCCGGCGTGCCG 21 121 1 CCGACACGCC 0.669149 -142 TTCGTCGCGTCCGGCACGCCGGGCGTGTCG 21 132 0 CCGGCACGCC 0.987335 -131 GGCCCATACGCCGGTACGCGACGGTAATTC 21 241 1 CCGGTACGCG 0.694431 -22 TACTCAACGGCCGCCGAGCGCGTCGGTTCG 22 13 1 CCGCCGAGCG 0.984641 -145 TGGGGTTTTACCGGCTGGCGATGGTTTTCC 22 76 1 CCGGCTGGCG 0.870426 -82 CTCGAATGTAGCGCGGCGCGGTGCCGGAAA 22 101 0 GCGCGGCGCG 0.984534 -57 CCTCCTTCCGCCACCTAGCGAGCCACCGGT 22 133 0 CCACCTAGCG 0.748745 -25 AGTCCCTCCGCCCGCACTCCATGGTCCCCG 23 60 1 CCCGCACTCC 0.871289 -241 AACCCAGTCGGCCCCAGTCGGACGATCTCG 23 125 0 GCCCCAGTCG 0.669236 -176 ACCCCGAGCTGCGCCGCGACCGCGCTGATA 23 171 0 GCGCCGCGAC 0.958884 -130 GCGTCGCGCTCCGCCGATACCCCGAGCTGC 23 189 0 CCGCCGATAC 0.587629 -112 TATCGGCGGAGCGCGACGCCGTTGCACGCC 23 200 1 GCGCGACGCC 0.974558 -101 GCGGCCTAATCCGCCACGACTTCTCAGATC 23 263 0 CCGCCACGAC 0.970946 -38 GCGGATTAGGCCGCCGCGAGAGAGGACCGC 23 279 1 CCGCCGCGAG 0.982302 -22 GCGCCCGGGTTCCCCGGGCCTTGGTGC 24 8 0 TCCCCGGGCC 0.694331 -79 GCCCGGGGAACCCGGGCGCCCCTGGATCCG 24 19 1 CCCGGGCGCC 0.975637 -68 CCTGCCACAGCCGCGGATCCAGGGGCGCCC 24 32 0 CCGCGGATCC 0.788101 -55 GTAGATAGCGGCGCAGCGCCGCCGATGCCT 24 59 0 GCGCAGCGCC 0.959434 -28 CACGAGTGGGCCCGCGCTACTGGCAATCGT 26 32 0 CCCGCGCTAC 0.705417 -79 CCGCCAAGCGCTATCCCGGG 27 1 1 CCGCCAAGCG 0.97583 -28 CCAAGCGCTATCCCGGGGCCGCTAC 27 14 1 TCCCGGGGCC 0.634676 -15 CCCCGAGGTTCCCGATCGCGCCCGCTCACG 28 16 0 CCCGATCGCG 0.721862 -285 ATCGGGAACCTCGGGGGGCGGTGAGTCGGG 28 30 1 TCGGGGGGCG 0.509666 -271 CCCACCGAGGGCACCAAGCGAACGCACCCG 28 154 1 GCACCAAGCG 0.821642 -147 GCGAACGCACCCGGAAAGCGCCGACAGAGT 28 171 1 CCGGAAAGCG 0.800143 -130 CATTTTCTTGCCGCCACGAACTAAAGCCTA 28 223 0 CCGCCACGAA 0.815336 -78 TCTGCATCGTCGCCGGCGCGGA 30 3 0 CGCCGGCGCG 0.935222 -47 CGGCGCCGCTCCTTAGCATCGC 30 38 0 GCGCCGCTCC 0.92872 -12 GTGCCTCCCACCCGCGAGCAGACGCAAAAT 32 11 1 CCCGCGAGCA 0.763799 -86 CCTGTCGGTGGCGGCGCGAGCAGACGCAAA 32 69 0 GCGGCGCGAG 0.921053 -28 GCCACCGACAGGGCCGCGCC 32 87 1 GGGCCGCGCC 0.959909 -10 CGGGGCTGACCGACGGCGGCTACAGTGACT 33 15 1 CGACGGCGGC 0.530725 -90 GGAACCCGAAGGACCACGCC 35 1 0 GGACCACGCC 0.821457 -90 ACAACCTGTCCGACCAGGAGCCGCAGCCGA 36 32 0 CGACCAGGAG 0.412249 -39 ACACACCACGGCGAGGACGACAACC 36 56 0 CCACGGCGAG 0.884657 -15 CCGGGTCGGCGACTTCCACA 37 1 1 CCGGGTCGGC 0.591132 -300 TCGGCGACTTCCACAACGGCGACGGAGAGC 37 16 1 CCACAACGGC 0.518245 -285 GCTTCAGCAGCCCGGTCGCCAGCAGCCGCT 37 97 1 CCCGGTCGCC 0.907288 -204 CCCACTCACGTCGGCGCGCATGTTGGTACC 37 130 0 TCGGCGCGCA 0.455453 -171 GTGGGGTACCGCCCGGATCCGGCCCGCTGG 37 155 1 GCCCGGATCC 0.577813 -146 TCGGAGCCTGCCAGCGGGCCGGATCCGGGC 37 165 0 CCAGCGGGCC 0.718363 -136 TCCGAACGTGCCCCAAATCGGGTTTCATAG 37 190 1 CCCCAAATCG 0.444598 -111 CACATAGGATCCGCATGGCGTCTGCTCAGC 37 224 1 CCGCATGGCG 0.749234 -77 TGACGCAGCACCGCATCTCGGTTGAGCGTG 37 276 1 CCGCATCTCG 0.536067 -25 ********** Masking position 8 Map Score: 117.506 Number of sites scoring better than the average of aligned sites = 85158 Number in coding regions = 78637 Number in noncoding regions = 6521 Number of orfs with sites within 600 bp upstream = 1695 Fraction of orfs with sites within 600 bp upstream = 0.272245 Motif number 2 GAGCCCGACGACGATGCAGAGCGCGCAGCGCGA 1 47 1 ACGATGGGCG 0.937936 -254 GAGCCCGACGACGATGCAGAGCGCGCAGCGCGA 1 105 1 ACGATGGGCG 0.937936 -196 CGCCGGTGATGGGCTGGTGGCGCTCACCCCGTT 1 170 1 GGGCTGGCGC 0.473232 -131 CGGTATGAACGCGCTGCGCAGCGGACCGAGGAG 2 76 1 GCGCTGCGCG 0.950478 -81 ACGATGAGGAGTGCGGGAGTGCGTGAGAGACTT 2 128 1 GTGCGGGGCG 0.891232 -29 CCACCTGCCGGCGGTTTCGGCGGCTGATGGTGT 3 23 1 GCGGTTGCGG 0.92778 -151 GGCTGATGGTGTGCTTTGGTGCGCTGTTTGCCA 3 44 1 GTGCTTGGCG 0.574316 -130 CCGAACAGCTGTGGCGTAGTGTGTGACTTGTCC 3 96 1 GTGGCGGGTG 0.827303 -78 CCGCGCTAGGGCGACGTTCACCGGATTTGTAGG 3 142 1 GCGACGCCCG 0.938783 -32 TGCGCCGACGACGATGCAGAGCGTAGCGATGAG 4 13 1 ACGATGGGCG 0.937936 -215 GCAGAGCGTAGCGATGAGGTGGGGGCACCACCC 4 28 1 GCGATGGGGG 0.979871 -200 CCACCCGCTTGCGGGGGAGAGTGGCGCTGATGA 4 55 1 GCGGGGGGTG 0.986343 -173 GGGGAGAGTGGCGCTGATGACCTGCGCCGACGA 4 68 1 GCGCTGGCCT 0.729062 -160 TGCGCCGACGACGATGCAGAGCGTAGCGATGAG 4 90 1 ACGATGGGCG 0.937936 -138 GCAGAGCGTAGCGATGAGGTGGGGGCACCACCC 4 105 1 GCGATGGGGG 0.979871 -123 CCACCCGCTTGCGGGGGAGAGTGGCGCTGATGA 4 132 1 GCGGGGGGTG 0.986343 -96 GGGGAGAGTGGCGCTGATGACCTGCGCCGACGA 4 145 1 GCGCTGGCCT 0.729062 -83 TGCGCCGACGACGATGCAGAGCGTAGCGATGAG 4 167 1 ACGATGGGCG 0.937936 -61 GCAGAGCGTAGCGATGAGGTGGGGGCACCACCC 4 182 1 GCGATGGGGG 0.979871 -46 CCACCCGCTTGCGGGGGAGAGTGGCGCTG 4 209 1 GCGGGGGGTG 0.986343 -19 CACCGTCACAGCGAGGTAGACAGATCAGGAGAA 5 15 0 GCGAGGGCAG 0.930233 -42 GTGACGGTGTGCGGCTCCGACGGTAGGG 5 39 1 GCGGCTGCGG 0.940155 -18 TATTCACGGCGCGCCGTGGATTGAGCGGCAACG 6 21 1 GCGCCGGTTG 0.839895 -121 GTGTCTGCTCGCGGGGTGCGCGCGGG 8 4 0 GCGGGGCCGC 0.792787 -127 CCGATTTTGTGCGACTCTGTGTCTGCTCGCGGG 8 22 0 GCGACTGGTC 0.720314 -109 CGGTTTTGATGCGACTCTGTGTCTGCTCGCCCA 8 55 1 GCGACTGGTC 0.720314 -76 CCAGCAGGGTGGGAGGGTGAGCCGCCGGGTCGC 8 92 0 GGGAGGGGCC 0.738127 -39 CTGCTGACACACGATGAGGGCAGAACCCCAGGT 10 102 0 ACGATGGCAG 0.627594 -199 GCCGTGGTATGCGGGTTTGTTCGACGAGGTTTA 10 239 0 GCGGGTGTCG 0.834082 -62 TGTCGTCGCAGCGCCTGAGACTGGCCTGAGAGG 10 275 0 GCGCCTGCTG 0.870348 -26 GTCATCGTTGTCGACGACCTGGGCCTTGTGCTC 13 24 0 TCGACGCGGG 0.4792 -44 CGGCGGTTTTGCCGCATTGCGCTGG 14 3 1 GCGGTTGCGC 0.794452 -31 GTTGTAATTGACGGCGCGGGCCTTAAGCCAGCT 15 11 0 ACGGCGGCCT 0.494274 -100 TGTGATCGGCGCGGTGGTGGCCGCGTGGCGGAC 17 73 0 GCGGTGGCCG 0.99212 -73 TGAAGTTCTAGCGGCTGTGATCGGCGCGGTGGT 17 88 0 GCGGCTGTCG 0.850896 -58 TGTTGGTTGAGCGTGGCCGCCCGTACGTCTGCC 18 13 0 GCGTGGGCCG 0.930431 -64 CAAATGAGACGCGCGGCGCGCGGATTCTAGGCG 19 36 0 GCGCGGCCGG 0.888426 -265 TCTCATTTGTGTGCCGAAGTGTGCTAGCCCGGG 19 60 1 GTGCCGGGTG 0.742689 -241 GAAGGATCACGCGATGACCGCCCACTACTGGGC 20 13 1 GCGATGCCCC 0.764327 -288 CGGGCAGGTAAGGCCGGTGGGCGTGTCGTAGCC 20 43 0 AGGCCGGGCG 0.660833 -258 ACGACGGTATGGGAGGATGTCCGGTCTTGCTCC 20 206 0 GGGAGGGCCG 0.862364 -95 ACGGATGTACACGGCGACGACGGTATGGGAGGA 20 222 0 ACGGCGGCGG 0.931814 -79 TGTCCAATTGGCGACGCCGTCGGGCAGGCGCGC 21 50 1 GCGACGGCGG 0.937072 -213 AGCGTCCAGCTCGGTGCTCGGCCGGCGTTCGAA 21 87 0 TCGGTGCGCC 0.432931 -176 ACCGAGCTGGACGCTTGCGGCTGTACCCGACAC 21 105 1 ACGCTTGCTG 0.427682 -158 ACCGTTACCTGCGCTGTCCAGGGAATATCGAGT 21 172 0 GCGCTGCGGG 0.906103 -91 CGGCCGCCGAGCGCGTCGGTTCGGCTACCGCAT 22 20 1 GCGCGTGTCG 0.751793 -138 CGAATGTAGCGCGGCGCGGTGCCGGAAAACCAT 22 96 0 GCGGCGGGCC 0.987556 -62 CCGGTTTTAGGTGCCGGTGCTCGAAAGAGTTTG 23 19 1 GTGCCGGTCG 0.496925 -282 CAGCGCGGTCGCGGCGCAGCTCGGGGTATCGGC 23 174 1 GCGGCGGTCG 0.965583 -127 GCTCGGGGTATCGGCGGAGCGCGACGCCGTTGC 23 192 1 TCGGCGGGCG 0.954684 -109 AACCCAGCGTTCGTGGTCGCCCGATCTGAGAAG 23 241 1 TCGTGGGCCG 0.520378 -60 AGAAGTCGTGGCGGATTAGGCCGCCGCGAGAGA 23 269 1 GCGGATGCCG 0.533684 -32 CCCTGGATCCGCGGCTGTGGCAGGCATCGGCGG 24 38 1 GCGGCTGCAG 0.856982 -49 TGAGTAGATAGCGGCGCAGCGCCGCCGATGCCT 24 59 0 GCGGCGGGCC 0.986533 -28 CCGCAGAATCGCGGTGCACCCACGATTGCCAGT 26 11 1 GCGGTGCCAC 0.515965 -100 TGTAGTAGGCACGAGTGGGCCCGCGCTACTGGC 26 38 0 ACGAGTGCCG 0.717262 -73 CGGAGATACTACGGGGCCGACTGATTTGGCTAC 26 78 0 ACGGGGGCTG 0.8828 -33 CGGGAACCTCGGGGGGCGGTGAGTCGGGACGTG 28 32 1 GGGGGGGGAG 0.752832 -269 TCCGCTGCTATCGGTGGGGCGCCGCATTTTCTT 28 244 0 TCGGTGGGCC 0.818706 -57 CGCGCCGGCGACGATGCAGAGCGCAGCGATGCT 30 13 1 ACGATGGGCG 0.937936 -37 GCGTCTGCTCGCGGGTGGGAGGCAC 32 3 0 GCGGGTGGGC 0.877358 -94 ATGAAAATGGGCGATTTTGCGTCTGCTCGCGGG 32 21 0 GCGATTGGTC 0.647475 -76 GACGAAAAGGGCGATTTTGCGTCTGCTCGCGCC 32 54 1 GCGATTGGTC 0.647475 -43 GGCCCTGTCGGTGGCGGCGCGAGCAGACGCAAA 32 69 0 GTGGCGGGAG 0.720395 -28 GGCGCGGCCCTGTCGGTGGCGGCG 32 83 0 GCGCGGCGTC 0.688587 -14 CCTGCGGGGCTGACCGACGGCGGCTA 33 4 1 GCGGGGGCCG 0.993611 -101 TTGTAAATACGCGGCGAAGCTAGT 34 2 0 GCGGCGGTAG 0.824027 -107 TGGGTACTCTGCGAGGATGACGGGTCGCGTAGG 35 30 0 GCGAGGGCGG 0.97571 -61 TGCGGTCACAACGAGTGCGAGAGGACGGGTGC 35 69 1 ACGAGTGGAG 0.387875 -22 GTTGTCGTCCTCGCCGTGGTGTGT 36 57 1 TCGCCGGGTG 0.797524 -14 TTCCACAACGGCGACGGAGAGCGACCAATTGGC 37 24 1 GCGACGGGCG 0.992688 -277 CGACCAATTGGCGTTGGTCCGGGACGCTGCCTC 37 45 1 GCGTTGCGGG 0.583575 -256 GCTGCCTCAAGCGTGGCAGCGGGATTTGCTTCA 37 70 1 GCGTGGGGGG 0.91102 -231 ACCAACATGCGCGCCGACGTGAGTGGGGTACCG 37 133 1 GCGCCGGGAG 0.963721 -168 CAACCGAGATGCGGTGCTGCGTCACAGCGTCAA 37 267 0 GCGGTGGGTC 0.946163 -34 GCACCGCATCTCGGTTGAGCGTGTCGTA 37 283 1 TCGGTTGGTG 0.486709 -18 ****** * *** Masking position 3 Map Score: 120.906 Number of sites scoring better than the average of aligned sites = 47832 Number in coding regions = 44747 Number in noncoding regions = 3085 Number of orfs with sites within 600 bp upstream = 1216 Fraction of orfs with sites within 600 bp upstream = 0.19531 Motif number 3 CGACGATGCAGAGCGCGCAGCGCGATGAGAA 1 55 1 GAGCGCCAGC 0.752956 -246 CGACGATGCAGAGCGCGCAGCGCGATGAGAA 1 113 1 GAGCGCCAGC 0.752956 -188 CACCGTAACGGCCGGTTCACCAAGGCCGATA 2 32 0 GCCGGTCACC 0.949504 -125 CCACCTGCCGGCGGTTTCGGCGGCTGATGGT 3 23 1 GCGGTTCGGC 0.528545 -151 TCCGATTTTGGCCTTGCCGCGCTAGGGCGAC 3 126 1 GCCTTGCGCG 0.695034 -48 CTGCATCGTCGTCGGCGCAGG 4 1 0 GTCGGCCAGG 0.974466 -227 TAGCGATGAGGTGGGGGCACCACCCGCTTGC 4 36 1 GTGGGGCACC 0.962293 -192 CTGCATCGTCGTCGGCGCAGGTCATCAGCGC 4 78 0 GTCGGCCAGG 0.974466 -150 TAGCGATGAGGTGGGGGCACCACCCGCTTGC 4 113 1 GTGGGGCACC 0.962293 -115 CTGCATCGTCGTCGGCGCAGGTCATCAGCGC 4 155 0 GTCGGCCAGG 0.974466 -73 TAGCGATGAGGTGGGGGCACCACCCGCTTGC 4 190 1 GTGGGGCACC 0.962293 -38 TGCTCGCGGGGTGCGCGCGGG 8 1 0 GTGCGCCGGG 0.959493 -130 GCGACTCTGTGTCTGCTCGCGGGGTGCGCGC 8 14 0 GTCTGCCGCG 0.952003 -117 GCGACTCTGTGTCTGCTCGCCCAGCACGCGA 8 65 1 GTCTGCCGCC 0.957715 -66 AGGGTGAGCCGCCGGGTCGCGTGCTGGGCGA 8 81 0 GCCGGGCGCG 0.989516 -50 GACGATCCCTGCCGTTCCACGCCTGGGCGCA 10 28 1 GCCGTTCACG 0.647342 -273 GGTGCGGTTTGTGCCTGCGCCCAGGCGTGGA 10 43 0 GTGCCTCGCC 0.500795 -258 AAGAGTTCTCGTCCGCGCGGGTTTCGCCTGC 10 131 0 GTCCGCCGGG 0.98329 -170 CAGTGTCGTCGCAGCGCCTGAGACT 10 286 0 GTCGTCCAGC 0.828599 -15 CCGACATCCCGCCCGGTCACCTTTTCAGGCC 12 71 1 GCCCGGCACC 0.981166 -111 CGACCCGTCCAGCGCAATGCGGC 14 21 0 ACCCGTCAGC 0.399055 -13 CGTTGTAATTGACGGCGCGGGCCTTAAGCCA 15 14 0 GACGGCCGGG 0.930586 -97 ACCAACCGGTGTGCGGCCACGTTGTAATTGA 15 33 0 GTGCGGCACG 0.950707 -78 ACCGGTTGGTGTGTGGCCACGTTGTTATCTG 15 54 1 GTGTGGCACG 0.828715 -57 CTCCTGAGTCGTCGGGCCGGG 16 1 0 GTCGGGCGGG 0.984938 -26 CCTGTCCGCCACGCGGCCACCACCGCGCCGA 17 70 1 ACGCGGCACC 0.535537 -76 TGTTGGTTGAGCGTGGCCGCCCGTACGTCTG 18 15 0 GCGTGGCGCC 0.903558 -62 TTCGCCTAGAATCCGCGCGCCGCGCGTCTCA 19 34 1 ATCCGCCGCC 0.832338 -267 AAGTGTGCTAGCCCGGGCACCAGATCACACC 19 76 1 GCCCGGCACC 0.981164 -225 CCTTAACAAGGTCTTGGCGGCTGACATGGCG 19 106 0 GTCTTGCGGC 0.670064 -195 AACACACAGGGTCGGCCCGGGGTGCTAGCGG 19 250 1 GTCGGCCGGG 0.983712 -51 GGCCTTACCTGCCCGTACACCACACCCCTGG 20 61 1 GCCCGTCACC 0.941952 -240 ACATCCTGGGGACCGTCCAGCGAGTTTCACC 20 149 0 GACCGTCAGC 0.718582 -152 ACCGGAGCAAGACCGGACATCCTCCCATACC 20 203 1 GACCGGCATC 0.388385 -98 TCCGTAGCCCGTCCTGGCAGGTGCTGGGTTG 20 250 1 GTCCTGCAGG 0.798998 -51 CGTCGTGGCAGGTGTTGGGCTG 20 289 0 GTCGTGCAGG 0.821627 -12 TGCGGGCATGGACGGCACCCCCGGACACGAC 21 14 0 GACGGCCCCC 0.429198 -249 TGGCGACGCCGTCGGGCAGGCGCGCCTGGTT 21 58 1 GTCGGGAGGC 0.472297 -205 CCAGCTCGGTGCTCGGCCGGCGTTCGAACCA 21 84 0 GCTCGGCGGC 0.500765 -179 TGGCCCATACGCCGGTACGCGACGGTAATTC 21 240 1 GCCGGTCGCG 0.96712 -23 CGCCGAGCGCGTCGGTTCGGCTACCGCATGG 22 24 1 GTCGGTCGGC 0.963252 -134 GAGGGTTCGAGTCCCTCCGCCCGCACTCCAT 23 51 1 GTCCCTCGCC 0.713651 -250 CTGAGTATCAGCGCGGTCGCGGCGCAGCTCG 23 166 1 GCGCGGCGCG 0.970423 -135 GGAGCGCGACGCCGTTGCACGCCGGTTGGCC 23 207 1 GCCGTTCACG 0.647343 -94 GGCCCGGGGAACCCGGGCGCCCCTGGATCCG 24 18 1 ACCCGGCGCC 0.83654 -69 ACTGGCAATCGTGGGTGCACCGCGATTCTGC 26 13 0 GTGGGTCACC 0.888259 -98 GTAGGCACGAGTGGGCCCGCGCTACTGGCAA 26 36 0 GTGGGCCGCG 0.973601 -75 GTAGCGGCCCCGGGATAGCGCTTG 27 15 0 GCGGCCCGGG 0.675294 -14 TCCCGATCGCGCCCGCTCACGACACA 28 6 0 GCCCGCCACG 0.976819 -295 GGGGCGGTGAGTCGGGACGTGGCTCCTCTAG 28 44 1 GTCGGGCGTG 0.85113 -257 CCGTGACACAGTCTGGGCGTCGTGTCGAGCC 28 278 0 GTCTGGCGTC 0.585625 -23 CTGCATCGTCGCCGGCGCGGA 30 1 0 GCCGGCCGGA 0.84152 -49 TTGTCCCGATGTGGTGACACC 31 59 1 GTGGTGCACC 0.739908 -11 GCGATTTTGCGTCTGCTCGCGGGTGGGAGGC 32 13 0 GTCTGCCGCG 0.952003 -84 GCGATTTTGCGTCTGCTCGCGCCGCCACCGA 32 64 1 GTCTGCCGCG 0.952003 -33 AGGCTAAGTAGCCCGCTCGGATCCCTGTGAG 33 59 1 GCCCGCCGGA 0.840012 -46 CTGCGAGGATGACGGGTCGCGTAGGGAACCC 35 24 0 GACGGGCGCG 0.952314 -67 ACCCAGTACTGTGCGGTCACAACGAGTGCGA 35 58 1 GTGCGGCACA 0.643789 -33 CGCGAATTTGGTCGCTTCGGCTGCGGCTCCT 36 16 1 GTCGCTCGGC 0.682432 -55 ACGACAACCTGTCCGACCAGGAGCCGCAGCC 36 34 0 GTCCGACAGG 0.522272 -37 TGCTTCAGCAGCCCGGTCGCCAGCAGCCGCT 37 96 1 GCCCGGCGCC 0.989363 -205 CCCCACTCACGTCGGCGCGCATGTTGGTACC 37 130 0 GTCGGCCGCA 0.895678 -171 TCCGCATGGCGTCTGCTCAGCCGTGTGCGGA 37 233 1 GTCTGCCAGC 0.904167 -68 AGCGTCAAGTATCCGCACACGGCTGAGCAGA 37 244 0 ATCCGCCACG 0.708742 -57 ****** **** Masking position 8 Map Score: 105.063 Number of sites scoring better than the average of aligned sites = 32727 Number in coding regions = 30273 Number in noncoding regions = 2454 Number of orfs with sites within 600 bp upstream = 1172 Fraction of orfs with sites within 600 bp upstream = 0.188243 Motif number 4 GGGCGGTTAGGTCGAGCCCGACGACGATGCAG 1 34 1 GTGAGCCCAC 0.825666 -267 GGGCGGTTAGGTCGAGCCCGACGACGATGCAG 1 92 1 GTGAGCCCAC 0.825666 -209 TCCGGAACGGGGTGAGCGCCACCAGCCCATCA 1 176 0 GGGAGCGCAC 0.989452 -125 CTACAAATCCGGTGAACGTCGCCCTAGCGCGG 3 142 0 GGGAACGTGC 0.976433 -32 CGACGACGATGCAGAGCGTAGCGATGAGGTGG 4 18 1 GCGAGCGTGC 0.992768 -210 CCCGCTTGCGGGGGAGAGTGGCGCTGATGACC 4 58 1 GGGAGAGTGC 0.975295 -170 CGACGACGATGCAGAGCGTAGCGATGAGGTGG 4 95 1 GCGAGCGTGC 0.992768 -133 CCCGCTTGCGGGGGAGAGTGGCGCTGATGACC 4 135 1 GGGAGAGTGC 0.975295 -93 CGACGACGATGCAGAGCGTAGCGATGAGGTGG 4 172 1 GCGAGCGTGC 0.992768 -56 CCCGCTTGCGGGGGAGAGTGGCGCTG 4 212 1 GGGAGAGTGC 0.975295 -16 TGGTTGAACGTTACCTTCACAGTC 6 128 0 GTGAACGTAC 0.827309 -14 GGCAGCCCGAGGAGAACGCGGCA 7 32 1 GGGAACGCGC 0.985299 -13 TGTGTCAGCAGGCGAAACCCGCGCGGACGAGA 10 124 1 GGGAAACCGC 0.76031 -177 TGCAGTTACTGTTGAAAGCCACACCCATGCCA 11 14 1 GTGAAAGCAC 0.62104 -30 TTCGAGACAAGGAGACAGCAGC 17 134 1 GGGACAGCGC 0.790117 -12 TTCGTTGTTGGTTGAGCGTGGCCGCCCGTACG 18 19 0 GTGAGCGTGC 0.985582 -58 AGGCTTGGCCGGTTAGCGTTACGCCAATCCAC 19 203 1 GGTAGCGTAC 0.651836 -98 AGGTAAGGCCGGTGGGCGTGTCGTAGCCCAGT 20 39 0 GGGGGCGTTC 0.895474 -262 CCCAAGGTGTGGTGAAACTCGCTGGACGGTCC 20 139 1 GGGAAACTGC 0.662232 -162 CGTCCGGCACGCCGGGCGTGTCGGGTACAGCC 21 123 0 GCGGGCGTTC 0.86584 -140 CGCCCGGCGTGCCGGACGCGACGAAGGTCACT 21 137 1 GCGGACGCAC 0.814906 -126 CTCAACGGCCGCCGAGCGCGTCGGTTCGGCTA 22 15 1 GCGAGCGCTC 0.973315 -143 CGGGGTATCGGCGGAGCGCGACGCCGTTGCAC 23 195 1 GCGAGCGCAC 0.975055 -106 GTAGATAGCGGCGCAGCGCCGCCGATGCCTGC 24 57 0 GCCAGCGCGC 0.951619 -30 GCTGCTATCGGTGGGGCGCCGCATTTTCTTGC 28 242 0 GTGGGCGCGC 0.828998 -59 CGGCGACGATGCAGAGCGCAGCGATGCTAAGG 30 18 1 GCGAGCGCGC 0.973017 -32 AGCCGCCGTCGGTCAGCCCCGCAGG 33 4 0 GGCAGCCCGC 0.854532 -101 CCGCATCTCGGTTGAGCGTGTCGTA 37 286 1 GTGAGCGTTC 0.918011 -15 ** ****** ** Masking position 1 Map Score: 58.6693 Number of sites scoring better than the average of aligned sites = 5321 Number in coding regions = 4874 Number in noncoding regions = 447 Number of orfs with sites within 600 bp upstream = 327 Fraction of orfs with sites within 600 bp upstream = 0.0525217 Motif number 5 CGACGATGCAGAGCGCGCAGCGCGATGAGAA 1 55 1 GAGCGCGCGC 0.910103 -246 CGACGATGCAGAGCGCGCAGCGCGATGAGAA 1 113 1 GAGCGCGCGC 0.910103 -188 GAATTCTCCTCGGTCCGCTGCGCAGCGCGTT 2 83 0 CGGTCCGCGC 0.968238 -74 GACGACGATGCAGAGCGTAGCGATGAGGTGG 4 19 1 CAGAGCGTGC 0.950697 -209 CCGCTTGCGGGGGAGAGTGGCGCTGATGACC 4 59 1 GGGAGAGTGC 0.893302 -169 GACGACGATGCAGAGCGTAGCGATGAGGTGG 4 96 1 CAGAGCGTGC 0.950697 -132 CCGCTTGCGGGGGAGAGTGGCGCTGATGACC 4 136 1 GGGAGAGTGC 0.893302 -92 GACGACGATGCAGAGCGTAGCGATGAGGTGG 4 173 1 CAGAGCGTGC 0.950697 -55 CCGCTTGCGGGGGAGAGTGGCGCTG 4 213 1 GGGAGAGTGC 0.893302 -15 CTCGCTGTGACGGTGTGCGGCTCCGACGGTA 5 33 1 CGGTGTGCGC 0.922577 -24 CAAATCAGCTTGGACCGTTGCCGCTCAATCC 6 38 0 TGGACCGTGC 0.810037 -104 GCAGCCCGAGGAGAACGCGGCA 7 33 1 GAGAACGCGC 0.837766 -12 CAGGGTGGGAGGGTGAGCCGCCGGGTCGCGT 8 90 0 GGGTGAGCGC 0.938419 -41 ACACACCAACCGGTGTGCGGCCACGTTGTAA 15 37 0 CGGTGTGCGC 0.922577 -74 GCACACCGGTTGGTGTGTGGCCACGTTGTTA 15 50 1 TGGTGTGTGC 0.474988 -61 TCGAGACAAGGAGACAGCAGC 17 135 1 GAGACAGCGC 0.63876 -11 TCGTTGTTGGTTGAGCGTGGCCGCCCGTACG 18 19 0 TTGAGCGTGC 0.408567 -58 GCGTCCAGCTCGGTGCTCGGCCGGCGTTCGA 21 88 0 CGGTGCTCGC 0.781901 -175 GCCCATACGCCGGTACGCGACGGTAATTCCC 21 242 1 CGGTACGCAC 0.601187 -21 GTATCTCGAATGTAGCGCGGCGCGGTGCCGG 22 104 0 TGTAGCGCGC 0.63521 -54 TCAGCGCGGTCGCGGCGCAGCTCGGGGTATC 23 173 1 CGCGGCGCGC 0.924846 -128 GGGGTATCGGCGGAGCGCGACGCCGTTGCAC 23 196 1 CGGAGCGCAC 0.958897 -105 CGTGGCGGATTAGGCCGCCGCGAGAGAGGAC 23 275 1 TAGGCCGCGC 0.717522 -26 TAGATAGCGGCGCAGCGCCGCCGATGCCTGC 24 57 0 CGCAGCGCGC 0.949122 -30 TGGCAATCGTGGGTGCACCGCGATTCTGCGG 26 11 0 GGGTGCACGC 0.706313 -100 GCGCTATCCCGGGGCCGCTAC 27 18 1 GGGGCCGCAC 0.707143 -11 GGCGGTGAGTCGGGACGTGGCTCCTCTAGAG 28 46 1 CGGGACGTGC 0.84902 -255 CTGCTATCGGTGGGGCGCCGCATTTTCTTGC 28 242 0 TGGGGCGCGC 0.975805 -59 GGCGACGATGCAGAGCGCAGCGATGCTAAGG 30 19 1 CAGAGCGCGC 0.984771 -31 ACAACGGCGACGGAGAGCGACCAATTGGCGT 37 28 1 CGGAGAGCAC 0.802605 -273 GGCGTTGGTCCGGGACGCTGCCTCAAGCGTG 37 54 1 CGGGACGCGC 0.94964 -247 ******** ** Masking position 11 Map Score: 46.1708 Number of sites scoring better than the average of aligned sites = 11637 Number in coding regions = 10779 Number in noncoding regions = 858 Number of orfs with sites within 600 bp upstream = 583 Fraction of orfs with sites within 600 bp upstream = 0.0936396 Motif number 6 CCACCAGCCCATCACCGGCGGGCGTCTTGACCT 1 157 0 AACCGGCGGC 0.840401 -144 TGCCCGAATTCTCCTCGGTCCGCTGCGCAGCGC 2 86 0 CCTCGGTCGC 0.963276 -71 GAGTGCGTGAGAGACTTGCCGGT 2 144 1 GACTTGCCGT 0.231046 -13 TGTTTGAGATCCCACCTGCCGGCGGTTTCGGCG 3 12 1 CACCTGCCGC 0.98816 -162 TGCCGCGTTCTCCTCGGGCTGCCGATCCGATT 7 23 0 CCTCGGGCGC 0.768862 -22 CCCGCGCGCACCCCGCGAGCAGACACAGAG 8 8 1 GCCCCGCGGC 0.802628 -123 GGCGGCTCACCCTCCCACCCTGCTGGACGGTAA 8 99 1 CCCCACCCGC 0.70194 -32 TTGAAAGCCACACCCATGCCAGTCCACGC 11 25 1 CCCATGCCGT 0.847366 -19 GCCCGACATCCCGCCCGGTCACCTTTTCAGGCC 12 69 1 CCCCGGTCCC 0.886082 -113 CGACCCGTCCAGCGCAATGCGGC 14 21 0 CCCCGTCCGC 0.865588 -13 TGGCCACACACCAACCGGTGTGCGGCCACGTTG 15 40 0 CACCGGTGGC 0.956963 -71 GTGAGATGTCCCCCTTTGTCCGCA 17 2 0 CCTTTGTCGC 0.611525 -144 CCGTTGAGTCATAACCTGTCCGCCACGCGGCCA 17 56 1 AACCTGTCGC 0.794906 -90 CCAGATCACACCGCCATGTCAGCCGCCAAGACC 19 95 1 CCCATGTCGC 0.943071 -206 CACCCCGGGCCGACCCTGTGTGTTTGCGTACGG 19 241 0 CCCCTGTGGT 0.878343 -60 CCTTGTGTGTGAAACCTGCCGGCCGCTAGCACC 19 270 0 GACCTGCCGC 0.964458 -31 GCCCACCGGCCTTACCTGCCCGTACACCACACC 20 54 1 CACCTGCCGT 0.925295 -247 CCGGGGGTGCCGTCCATGCCCGCAGCGTATGTC 21 21 1 CCCATGCCGC 0.973964 -242 GCCGGCGTTCGAACCAGGCGCGCCTGCCCGACG 21 67 0 GCCAGGCGGC 0.879769 -196 GTCCAGCTCGGTGCTCGGCCGGCGTTCGAACCA 21 84 0 GCTCGGCCGC 0.950636 -179 TGTACCCGACACGCCCGGCGTGCCGGACGCGAC 21 126 1 ACCCGGCGGC 0.93224 -137 CCTCCTTCCGCCACCTAGCGAGCCACCGGTATC 22 130 0 CCCTAGCGGC 0.715464 -28 CAAACATGCCGGTTTTAGGTGCC 23 1 1 CACATGCCGT 0.671155 -300 CCCGCGCATACAACCCAGTCGGCCCCAGTCGGA 23 133 0 CCCCAGTCGC 0.968592 -168 GACCGCGCTGATACTCAGCCCGCGCATACAACC 23 151 0 ACTCAGCCGC 0.605156 -150 GGGTTACCGGCCAACCGGCGTGCAACGGCGTCG 23 213 0 CACCGGCGGC 0.980472 -88 GGCGCAGCGCCGCCGATGCCTGCCACAGCCGCG 24 47 0 CCGATGCCGC 0.620814 -40 TCGTCGTAGCCAAATCAGTCGGCCCCGTAGTAT 26 73 1 CATCAGTCGC 0.704081 -38 TAGCGTTTACCGACTCTGTCGGCGCTTTCCGGG 28 180 0 CCTCTGTCGC 0.954747 -121 GAACTAAAGCCTAATCGGTGAGTTAGCGTTTAC 28 203 0 CATCGGTGGT 0.409164 -98 GTGCCTCCCACCCGCGAGCAGACGCAAAA 32 7 1 CACCCGCGGC 0.892891 -90 GGCGCGGCCCTGTCGGTGGCGGCGCGA 32 80 0 CCCCTGTCGT 0.937184 -17 CACTGTAGCCGCCGTCGGTCAGCCCCGCAGG 33 9 0 GGTCGGTCGC 0.45697 -96 AGCCCGCTCGGATCCCTGTGAGCCCCCAAAGAA 33 68 1 GCCCTGTGGC 0.940517 -37 TTTGCTTCAGCAGCCCGGTCGCCAGCAGCCGCT 37 94 1 CCCCGGTCCC 0.886084 -207 GCTACTGGTACCAACATGCGCGCCGACGTGAGT 37 124 1 CACATGCGGC 0.86937 -177 GGGCACGTTCGGAGCCTGCCAGCGGGCCGGATC 37 170 0 GGCCTGCCGC 0.878996 -131 * ******* ** Masking position 12 Map Score: 47.5854 Number of sites scoring better than the average of aligned sites = 22035 Number in coding regions = 20627 Number in noncoding regions = 1408 Number of orfs with sites within 600 bp upstream = 853 Fraction of orfs with sites within 600 bp upstream = 0.137006 Motif number 7 GCGGGAGTGCGTGAGAGACTTGCCGGT 2 140 1 GTGAGCTGCC 0.902082 -17 GTGTGCTTTGGTGCGCTGTTTGCCAAACAGCATG 3 52 1 GTGCGTTGCC 0.988312 -122 CTGTGGCGTAGTGTGTGACTTGTCCGATTTTGGC 3 104 1 GTGTGCTGTC 0.825326 -70 CAAGCTGATTTGGCGATTCCTGGCAGACTGTTAG 6 57 1 TGGCGCTGGC 0.918641 -85 CCGTTTATTCGGACGATCCCTGCCGTTCCACGCC 10 17 1 GGACGCTGCC 0.977827 -284 ACCAATGTTGGTGCGGTTTGTGCCTGCGCCCAGG 10 49 0 GTGCGTTGCC 0.988311 -252 GTCAAGAGTAGGGCGATTTGTGCTGCTTGGCGGA 10 161 0 GGGCGTTGCT 0.949802 -140 TTGGCCCCATGGACGGGTTTTGTTTGGTGGTCAA 10 190 0 GGACGTTGTT 0.423622 -111 CGTAAACGTCGGGCGTCCCATGCCTTTCGGTCGC 19 161 1 GGGCGCTGCC 0.996995 -140 TGCTCCTTGTGTGTGAAACCTGCCGGCCGCTAGC 19 273 0 GTGTGCTGCC 0.942014 -28 TAAGGCCGGTGGGCGTGTCGTAGCCCAGTAGTGG 20 34 0 GGGCGCTAGC 0.741328 -267 CCACACCCCTGGACGTAACTTGACACCAATCCAC 20 80 1 GGACGCTGAC 0.760717 -221 CCACACCTTGGGGCACCTTCTGTCACTGCTCGGT 20 117 0 GGGCATTGTC 0.672267 -184 GTGTCCGGGGGTGCCGTCCATGCCCGCAGCGTAT 21 17 1 GTGCCCTGCC 0.927852 -246 TGAGAAGTCGTGGCGGATTAGGCCGCCGCGAGAG 23 267 1 TGGCGTGGCC 0.735768 -34 CGCACCACACGGGCGTTTCTTGCTTGATTAGGGC 31 19 0 GGGCGCTGCT 0.97651 -51 TATTTACAAATTGCGTTATATGTCTAGACATAAG 34 26 1 TTGCGTTGTC 0.810489 -83 ATAGAGCAGTTTGCGTCTTATGTCTAGACATATA 34 42 0 TTGCGTTGTC 0.810489 -67 TTTGGGGCACGTTCGGAGCCTGCCAGCGGGCCGG 37 173 0 GTTCGCTGCC 0.907511 -128 ***** * **** Masking position 11 Map Score: 18.649 Number of sites scoring better than the average of aligned sites = 3405 Number in coding regions = 3115 Number in noncoding regions = 290 Number of orfs with sites within 600 bp upstream = 268 Fraction of orfs with sites within 600 bp upstream = 0.0430453 Motif number 8 GCGCAGCGCGATGAGAAGGAG 1 2 1 CGCAGCGCGA 0.801662 -299 ATGCAGAGCGCGCAGCGCGATGAGAAGGAG 1 60 1 CGCAGCGCGA 0.801662 -241 ATGCAGAGCGCGCAGCGCGATGAGAAATAG 1 118 1 CGCAGCGCGA 0.801662 -183 TTTCTGAGTCCGGAACGGGGTGAGCGCCAC 1 186 0 CGGAACGGGG 0.742065 -115 AGAGGCACAGCGGAACGCTAAACCATCACA 1 256 0 CGGAACGCTA 0.703249 -45 CCGAGGTGGTCGGCACCGTAACGGCCGGTT 2 46 0 CGGCACCGTA 0.439068 -111 AGCATGTGAACGGTAACCGAACAGCTGTGG 3 80 1 CGGTAACCGA 0.820678 -94 CCCTACCGTCGGAGCCGCACACCGTCACA 5 38 0 CGGAGCCGCA 0.935844 -19 AGTGTATTCACGGCGCGCCGTGGATTGAGC 6 17 1 CGGCGCGCCG 0.490534 -125 GGTAGTTAATCGGATCGGCAGCCCGAGGAG 7 16 1 CGGATCGGCA 0.393055 -29 TCTGCTCGCCCAGCACGCGACCCGGCGGCT 8 76 1 CAGCACGCGA 0.619519 -55 ACGATGAGGGCAGAACCCCAGGTGCAGTGT 10 95 0 CAGAACCCCA 0.629224 -206 CCGCATACCACGGCGCGCCTCTCAGGCCAG 10 258 1 CGGCGCGCCT 0.44823 -43 TCCGGGTATACGGAGCCCCCGGTGGACCGG 12 11 0 CGGAGCCCCC 0.859604 -171 TCCGTATACCCGGAAACCGAGATCCGCTTT 12 27 1 CGGAAACCGA 0.862934 -155 TTCTCACCGCCGAAGCCCGACATCCCGCCC 12 55 1 CGAAGCCCGA 0.517002 -127 AATAACTCCACGGAAACGGAATACCCC 18 60 1 CGGAAACGGA 0.707044 -17 ATGAGACGCGCGGCGCGCGGATTCTAGGCG 19 36 0 CGGCGCGCGG 0.858175 -265 GGCCGGTTAGCGTTACGCCAATCCACAGGC 19 209 1 CGTTACGCCA 0.323061 -92 CAGTGACAGAAGGTGCCCCAAGGTGTGGTG 20 123 1 AGGTGCCCCA 0.614628 -178 ACGGCGACGACGGTATGGGAGGATGTCCGG 20 215 0 CGGTATGGGA 0.208154 -86 CGGGCATGGACGGCACCCCCGGACACGACG 21 13 0 CGGCACCCCC 0.799649 -250 ACGCTTGCGGCTGTACCCGACACGCCCGGC 21 115 1 CTGTACCCGA 0.375719 -148 TCGTCGCGTCCGGCACGCCGGGCGTGTCGG 21 131 0 CGGCACGCCG 0.731354 -132 GCCCATACGCCGGTACGCGACGGTAATTCC 21 242 1 CGGTACGCGA 0.962664 -21 GGCAACCATGCGGTAGCCGAACCGACGCGC 22 30 0 CGGTAGCCGA 0.51674 -128 TAGCGCGGCGCGGTGCCGGAAAACCATCGC 22 93 0 CGGTGCCGGA 0.928944 -65 TTTTAGGTGCCGGTGCTCGAAAGAGTTTGA 23 23 1 CGGTGCTCGA 0.57558 -278 GTTTGACCTTCGGTAAGGCAACCCTTAGTT 23 91 1 CGGTAAGGCA 0.574965 -210 GGGGTATCGGCGGAGCGCGACGCCGTTGCA 23 196 1 CGGAGCGCGA 0.978035 -105 GCCGGTTGGCCGGTAACCCAGCGTTCGTGG 23 227 1 CGGTAACCCA 0.787805 -74 CAACTGGCAGAGGAAACGGACTCAAAACCC 28 105 1 AGGAAACGGA 0.122143 -196 CGAACGCACCCGGAAAGCGCCGACAGAGTC 28 172 1 CGGAAAGCGC 0.490819 -129 CAAGAAAATGCGGCGCCCCACCGATAGCAG 28 243 1 CGGCGCCCCA 0.966064 -58 AACGCCCGTGTGGTGCGCCAGTTTTGTCCC 31 36 1 TGGTGCGCCA 0.372534 -34 GGGTCGCGTAGGGAACCCGAAGGACCACGC 35 12 0 GGGAACCCGA 0.557906 -79 CTGTCCGACCAGGAGCCGCAGCCGAAGCGA 36 27 0 AGGAGCCGCA 0.456844 -44 ACAACGGCGACGGAGAGCGACCAATTGGCG 37 28 1 CGGAGAGCGA 0.882664 -273 CGGATCCGGGCGGTACCCCACTCACGTCGG 37 146 0 CGGTACCCCA 0.956533 -155 CGCTGTGACGCAGCACCGCATCTCGGTTGA 37 271 1 CAGCACCGCA 0.347579 -30 ********** Masking position 2 Map Score: 39.4362 Number of sites scoring better than the average of aligned sites = 10487 Number in coding regions = 9592 Number in noncoding regions = 895 Number of orfs with sites within 600 bp upstream = 659 Fraction of orfs with sites within 600 bp upstream = 0.105846 Motif number 9 CACTCCCGCACTCCTCATCGTGGACCAAAAT 2 118 0 CTCCTCATCT 0.788584 -39 CGGGTGGTGCCCCCACCTCATCGCTACGCTC 4 31 0 CCCCACCTCT 0.986974 -197 CGGGTGGTGCCCCCACCTCATCGCTACGCTC 4 108 0 CCCCACCTCT 0.986974 -120 CGGGTGGTGCCCCCACCTCATCGCTACGCTC 4 185 0 CCCCACCTCT 0.986974 -43 CTGGGGTTCTGCCCTCATCGTGTGTCAGCAG 10 104 1 GCCCTCATCT 0.83428 -197 ACCGCCGAAGCCCGACATCCCGCCCGGTCAC 12 60 1 CCCGACATCC 0.96359 -122 CCAGCACAATCCCGTCATCGTTGTCGACGAC 13 39 0 CCCGTCATCT 0.979313 -29 CGGAGCAAGACCGGACATCCTCCCATACCGT 20 205 1 CCGGACATCT 0.83428 -96 ACATCCGTAGCCCGTCCTGGCAGGTGCTGGG 20 247 1 CCCGTCCTGC 0.818334 -54 CACCACCTCCTTCCGCCACCT 22 147 0 CACCACCTCT 0.856529 -11 CCCTACGCGACCCGTCATCCTCGCAGAGTAC 35 29 1 CCCGTCATCT 0.979313 -62 GCACCCGTCCTCTCGCACTCGTTG 35 77 0 CCCGTCCTCC 0.976936 -14 ********* * Masking position 8 Map Score: 15.0623 Number of sites scoring better than the average of aligned sites = 320 Number in coding regions = 278 Number in noncoding regions = 42 Number of orfs with sites within 600 bp upstream = 41 Fraction of orfs with sites within 600 bp upstream = 0.00658529 Motif number 10 TGGTTTAGCGTTCCGCTGTGCCTCTTCAGG 1 261 1 TTCCGCTGTG 0.416818 -40 CCGACCACCTCGGCGGTATGAACGCGCTGC 2 63 1 CGGCGGTATG 0.829281 -94 TTTCGGCGGCTGATGGTGTGCTTTGGTGCG 3 37 1 TGATGGTGTG 0.324419 -137 CACCTCATCGCTACGCTCTGCATCGTCGTC 4 19 0 CTACGCTCTG 0.848855 -209 CACCTCATCGCTACGCTCTGCATCGTCGTC 4 96 0 CTACGCTCTG 0.848855 -132 CACCTCATCGCTACGCTCTGCATCGTCGTC 4 173 0 CTACGCTCTG 0.848855 -55 TACCTCGCTGTGACGGTGTGCGGCTCCGAC 5 30 1 TGACGGTGTG 0.801344 -27 GCTCAATCCACGGCGCGCCGTGAATACACT 6 17 0 CGGCGCGCCG 0.48577 -125 CGATTTTGTGCGACTCTGTGTCTGCTCGCG 8 24 0 CGACTCTGTG 0.830955 -107 GGTTTTGATGCGACTCTGTGTCTGCTCGCC 8 56 1 CGACTCTGTG 0.830955 -75 TGTCGGGCTTCGGCGGTGAGAAAGCGGATC 12 47 0 CGGCGGTGAG 0.78361 -135 CGGCTGTGATCGGCGCGGTGGTGGCCGCGT 17 80 0 CGGCGCGGTG 0.972778 -66 GCGGCTGACATGGCGGTGTGATCTGGTGCC 19 91 0 TGGCGGTGTG 0.90058 -210 CACCCCGGGCCGACCCTGTGTGTTTGCGTA 19 244 0 CGACCCTGTG 0.93568 -57 TGTCACTGCTCGGTGCTGTGGATTGGTGTC 20 101 0 CGGTGCTGTG 0.949337 -200 TACACGGCGACGACGGTATGGGAGGATGTC 20 218 0 CGACGGTATG 0.683861 -83 GCGTCCAGCTCGGTGCTCGGCCGGCGTTCG 21 89 0 CGGTGCTCGG 0.416606 -174 ATACCGTTACCTGCGCTGTCCAGGGAATAT 21 177 0 CTGCGCTGTC 0.73189 -86 GAATGTAGCGCGGCGCGGTGCCGGAAAACC 22 98 0 CGGCGCGGTG 0.972778 -60 CAGGCATCGGCGGCGCTGCGCCGCTATCTA 24 58 1 CGGCGCTGCG 0.968385 -29 CTTAGCATCGCTGCGCTCTGCATCGTCGCC 30 19 0 CTGCGCTCTG 0.926442 -31 AAGCAAGAAACGCCCGTGTGGTGCGCCAGT 31 28 1 CGCCCGTGTG 0.653853 -42 GGCGCGGCCCTGTCGGTGGCGGCG 32 83 0 CGGCCCTGTC 0.747316 -14 CGCCCGGATCCGGCCCGCTGGCAGGCTCCG 37 164 1 CGGCCCGCTG 0.793708 -137 TGCGGATACTTGACGCTGTGACGCAGCACC 37 258 1 TGACGCTGTG 0.915011 -43 AACCGAGATGCGGTGCTGCGTCACAGCGTC 37 269 0 CGGTGCTGCG 0.820445 -32 ********** Masking position 10 Map Score: 35.3232 Number of sites scoring better than the average of aligned sites = 9936 Number in coding regions = 9265 Number in noncoding regions = 671 Number of orfs with sites within 600 bp upstream = 490 Fraction of orfs with sites within 600 bp upstream = 0.0787022 Motif number 11 GGGCTCGACCTAACCGCCCAACTCCTTCTC 1 23 0 TAACCGCCCA 0.97114 -278 GGGCTCGACCTAACCGCCCAACTCCTTCTC 1 81 0 TAACCGCCCA 0.97114 -220 CCACCTCGTAGGCCGCCCATGTATCGGCC 2 10 1 AGGCCGCCCA 0.949876 -147 CAGCGCGTTCATACCGCCGAGGTGGTCGGC 2 62 0 ATACCGCCGA 0.730307 -95 TCAGCCGCCGAAACCGCCGGCAGGTGGGAT 3 20 0 AAACCGCCGG 0.599838 -154 AGTCGCATCAAAACCGCCGATTTTGTGCGA 8 41 0 AAACCGCCGA 0.854001 -90 ACTCTGTGTCTGCTCGCCCAGCACGCGACC 8 68 1 TGCTCGCCCA 0.793683 -63 TTTGCCTGATTACCGTCCAGCAGGGTGGG 8 112 0 TTACCGTCCA 0.821275 -19 CACCAAACAAAACCCGTCCATGGGGCCAAT 10 195 1 AACCCGTCCA 0.893005 -106 ATCCGCTTTCTCACCGCCGAAGCCCGACAT 12 48 1 TCACCGCCGA 0.592915 -134 GAAGCCCGACATCCCGCCCGGTCACCTTTT 12 66 1 ATCCCGCCCG 0.770488 -116 CGACCCGTCCAGCGCAATGCG 14 23 0 GACCCGTCCA 0.743103 -11 AATTACAACGTGGCCGCACACCGGTTGGTG 15 35 1 TGGCCGCACA 0.701295 -76 TGGTTGAGCGTGGCCGCCCGTACGTCTGCC 18 13 0 TGGCCGCCCG 0.856974 -64 GGCGTAACGCTAACCGGCCAAGCCTCCACA 19 198 0 TAACCGGCCA 0.828868 -103 GATCACGCGATGACCGCCCACTACTGGGCT 20 17 1 TGACCGCCCA 0.983365 -284 CGGCCTTACCTGCCCGTACACCACACCCCT 20 60 1 TGCCCGTACA 0.641278 -241 AACATCCTGGGGACCGTCCAGCGAGTTTCA 20 151 0 GGACCGTCCA 0.83727 -150 GTACATCCGTAGCCCGTCCTGGCAGGTGCT 20 245 1 AGCCCGTCCT 0.490107 -56 GCTGATACTCAGCCCGCGCATACAACCCAG 23 148 0 AGCCCGCGCA 0.748433 -153 GAACGCTGGGTTACCGGCCAACCGGCGTGC 23 223 0 TTACCGGCCA 0.691738 -78 ACGGACTCAAAACCCGTCCAGTGTGGGTTC 28 120 1 AACCCGTCCA 0.893005 -181 AGCAGACGCAAAATCGCCCATTTTCATGAC 32 27 1 AAATCGCCCA 0.642648 -70 GCACTCGTTGTGACCGCACAGTACTGGGTA 35 57 0 TGACCGCACA 0.857915 -34 ********** Masking position 5 Map Score: 26.0706 Number of sites scoring better than the average of aligned sites = 3859 Number in coding regions = 3576 Number in noncoding regions = 283 Number of orfs with sites within 600 bp upstream = 258 Fraction of orfs with sites within 600 bp upstream = 0.0414391 Motif number 12 CAAGTCTCTCACGCACTCCCGCACTCCTCA 2 132 0 ACGCACTCCC 0.917259 -25 CGGACAAGTCACACACTACGCCACAGCTGT 3 100 0 ACACACTACG 0.621908 -74 GTCATCAGCGCCACTCTCCCCCGCAAGCGG 4 59 0 CCACTCTCCC 0.913033 -169 GTCATCAGCGCCACTCTCCCCCGCAAGCGG 4 136 0 CCACTCTCCC 0.913033 -92 CAGCGCCACTCTCCCCCGCAAGCGG 4 213 0 CCACTCTCCC 0.913033 -15 ACCGTCGGAGCCGCACACCGTCACAGCGAG 5 33 0 CCGCACACCG 0.915092 -24 CCCGCGCGCACCCCGCGAGCAGACA 8 6 1 GCGCACCCCG 0.877201 -125 CCGGCGGCTCACCCTCCCACCCTGCTGGAC 8 97 1 ACCCTCCCAC 0.308705 -34 CAGGCACAAACCGCACCAACATTGGTGGAA 10 57 1 CCGCACCAAC 0.875767 -244 CTGTTGAAAGCCACACCCATGCCAGTCCAC 11 22 1 CCACACCCAT 0.734941 -22 TACAACGTGGCCGCACACCGGTTGGTGTGT 15 38 1 CCGCACACCG 0.915092 -73 CAACGTGGCCACACACCAACCGGTGTGCGG 15 48 0 ACACACCAAC 0.555051 -63 TGCCCGTACACCACACCCCTGGACGTAACT 20 70 1 CCACACCCCT 0.928271 -231 TGACACCAATCCACAGCACCGAGCAGTGAC 20 100 1 CCACAGCACC 0.611531 -201 CGGGCATGGACGGCACCCCCGGACACGACG 21 13 0 CGGCACCCCC 0.882161 -250 GTCCCTCCGCCCGCACTCCATGGTCCCCGA 23 61 1 CCGCACTCCA 0.792035 -240 TCCCGACTCACCGCCCCCCGAGGTTCCCGA 28 31 0 CCGCCCCCCG 0.915271 -270 TCCTCATGAGCCACACCACGTTGGGATTTG 34 79 0 CCACACCACG 0.947124 -30 ACACACCACGGCGAGGACGA 36 61 0 ACACACCACG 0.804236 -10 CCGGGCGGTACCCCACTCACGTCGGCGCGC 37 141 0 CCCCACTCAC 0.734691 -160 ********** Masking position 4 Map Score: 15.0502 Number of sites scoring better than the average of aligned sites = 4467 Number in coding regions = 4061 Number in noncoding regions = 406 Number of orfs with sites within 600 bp upstream = 337 Fraction of orfs with sites within 600 bp upstream = 0.0541279 Motif number 13 CGCGGCAAGGCCAAAATCGGACAAGTCACA 3 117 0 CCAAAATCGG 0.931656 -57 GCCAGGAATCGCCAAATCAGCTTGGACCGT 6 51 0 GCCAAATCAG 0.961453 -91 ACAGAGTCGCACAAAATCGGCGGTTTTGAT 8 35 1 ACAAAATCGG 0.858177 -96 ACGAGGTTTAGCCACATCAGCCACATTGGC 10 219 0 GCCACATCAG 0.896312 -82 GCTGGGTTGACCAAAATCAGCCCAACACCT 20 272 1 CCAAAATCAG 0.833585 -29 TCTCGCGGCGGCCTAATCCGCCACGACTTC 23 270 0 GCCTAATCCG 0.715707 -31 CTTCGTCGTAGCCAAATCAGTCGGCCCCGT 26 71 1 GCCAAATCAG 0.961453 -40 ACGAACTAAAGCCTAATCGGTGAGTTAGCG 28 208 0 GCCTAATCGG 0.938312 -93 GGTGTCACCACATCGGGACAAAACTG 31 54 0 ACCACATCGG 0.822476 -16 GCGAGCAGACGCAAAATCGCCCATTTTCAT 32 24 1 GCAAAATCGC 0.868491 -73 GCGAGCAGACGCAAAATCGCCCTTTTCGTC 32 54 0 GCAAAATCGC 0.868491 -43 CCGAACGTGCCCCAAATCGGGTTTCATAGC 37 191 1 CCCAAATCGG 0.967858 -110 ********** Masking position 6 Map Score: 12.9671 Number of sites scoring better than the average of aligned sites = 761 Number in coding regions = 704 Number in noncoding regions = 57 Number of orfs with sites within 600 bp upstream = 54 Fraction of orfs with sites within 600 bp upstream = 0.00867331 Motif number 14 CACTCGTGGAGGTCAAGACGCCCGCCGGTGAT 1 148 1 GGTCAGACCC 0.613079 -153 GGCAACGAAGCCGACAAACACC 1 289 0 GGCACGAACC 0.803674 -12 CACACCATCAGCCGCCGAAACCGCCGGCAGGT 3 25 0 GCCGCGAACC 0.857966 -149 GACACAGAGTCGCATCAAAACCGCCGATTTTG 8 46 0 CGCACAAACC 0.371244 -85 TCGTGTGTCAGCAGGCGAAACCCGCGCGGACG 10 121 1 GCAGCGAACC 0.696541 -180 AAACCCGCGCGGACGAGAACTCTTCCGCCAAG 10 138 1 GGACAGAATC 0.299701 -163 GTCCACCGGGGGCTCCGTATACCCGGAAACCG 12 14 1 GGCTCGTAAC 0.350523 -168 GCTCCCGTATCCTCTCAAGTCC 12 170 0 GCTCCGTACC 0.759315 -12 AGCCGTCATTCGCCTAGAATCCGCGCGCCGCG 19 26 1 CGCCAGAACC 0.931755 -275 GGCCGGTGGGCGTGTCGTAGCCCAGTAGTGGG 20 33 0 CGTGCGTACC 0.64689 -268 TCTGAGCTTTGGCTTAGAAACCATACCGTTAC 21 197 0 GGCTAGAACC 0.834533 -66 GTTGCCAATCGGTCCCGAATCCTGGGGTTTTA 22 54 1 GGTCCGAACC 0.95884 -104 GCGGGCGGAGGGACTCGAACCCTCAAACTCTT 23 43 0 GGACCGAACC 0.960629 -258 ACCGGATCAAGCCCTCGTATCCCAACTGGCAG 28 83 1 GCCCCGTACC 0.906697 -218 CAGAGGAAACGGACTCAAAACCCGTCCAGTGT 28 112 1 GGACCAAACC 0.684252 -189 GCCCTCGGTGGGATTCGAACCCACACTGGACG 28 134 0 GGATCGAACC 0.691188 -167 GCGGATGGCTCGACACGACGCCCAGACTGTGT 28 272 1 CGACCGACCC 0.737108 -29 AGCGTACCTAGGCTAAGTAGCCCGCTCGGATC 33 50 1 GGCTAGTACC 0.733484 -55 CCGTCATCCTCGCAGAGTACCCAGTACTGTGC 35 40 1 CGCAAGTACC 0.581379 -51 CCTATGTGCGCGCTATGAAACCCGATTTGGGG 37 200 0 CGCTTGAACC 0.437516 -101 TGCGTCACAGCGTCAAGTATCCGCACACGGCT 37 251 0 CGTCAGTACC 0.690201 -50 **** **** ** Masking position 12 Map Score: 12.2013 Number of sites scoring better than the average of aligned sites = 5068 Number in coding regions = 4642 Number in noncoding regions = 426 Number of orfs with sites within 600 bp upstream = 359 Fraction of orfs with sites within 600 bp upstream = 0.0576614 Motif number 15 CCCTACCGTCGGAGCCGCACACCGTCACAG 5 37 0 CGGAGCCCAC 0.435662 -20 CCCGCGCGCACCCCGCGAGCAGA 8 3 1 CGCGCGCCCC 0.862729 -128 GCACGCGACCCGGCGGCTCACCCTCCCACCC 8 88 1 CGGCGGCCAC 0.873223 -43 ACCGTTTATTCGGACGATCCCTGCCGTTCCA 10 16 1 CGGACGACCC 0.962724 -285 GAAACCCGCGCGGACGAGAACTCTTCCGCCA 10 137 1 CGGACGAAAC 0.251064 -164 TAAACCTCGTCGAACAAACCCGCATACCACG 10 239 1 CGAACAACCC 0.145932 -62 CCGGTCCACCGGGGGCTCCGTATACCCGGA 12 10 1 CGGGGGCCCG 0.763467 -172 GGCAGACGTACGGGCGGCCACGCTCAACCAA 18 13 1 CGGGCGGCAC 0.879543 -64 ATCTGGTGCCCGGGCTAGCACACTTCGGCAC 19 70 0 CGGGCTACAC 0.366898 -231 CCGTAAACGTCGGGCGTCCCATGCCTTTCGG 19 160 1 CGGGCGTCCA 0.780365 -141 TCGAAGGATCACGCGATGACCG 20 2 1 CGAAGGACAC 0.757873 -299 GAGCAGTGACAGAAGGTGCCCCAAGGTGTGG 20 120 1 AGAAGGTCCC 0.149241 -181 GGACGGGCTACGGATGTACACGGCGACGACG 20 233 0 CGGATGTCAC 0.571092 -68 TCGTCGTGTCCGGGGGTGCCGTCCATGCCCG 21 12 1 CGGGGGTCCG 0.847467 -251 GTTCGAACGCCGGCCGAGCACCGAGCTGGAC 21 86 1 CGGCCGACAC 0.825675 -177 TGGACGCTTGCGGCTGTACCCGACACGCCCG 21 112 1 CGGCTGTCCC 0.490087 -151 CCCGACACGCCCGGCGTGCCGGACGCGACGA 21 130 1 CCGGCGTCCG 0.578574 -133 GGTAGCCGAACCGACGCGCTCGGCGGCCGTT 22 18 0 CCGACGCCTC 0.53647 -140 GGAGTGCGGGCGGAGGGACTCGAACCCTCAA 23 49 0 CGGAGGGCTC 0.528826 -252 CGCCCGCACTCCATGGTCCCCGAGTTTGACC 23 68 1 CCATGGTCCC 0.132919 -233 CGGCCCCAGTCGGACGATCTCGTCCAAACTA 23 116 0 CGGACGACTC 0.764066 -185 TACCGGCCAACCGGCGTGCAACGGCGTCGCG 23 211 0 CCGGCGTCAA 0.305526 -90 CTTCTCAGATCGGGCGACCACGAACGCTGGG 23 243 0 CGGGCGACAC 0.954687 -58 GCACCAAGGCCCGGGGAACCCGGGCGCCCCT 24 11 1 CCGGGGACCC 0.911308 -76 GCCGCGGATCCAGGGGCGCCCGGGTTCCCCG 24 22 0 CAGGGGCCCC 0.659632 -65 TACTGGCAATCGTGGGTGCACCGCGATTCTG 26 14 0 CGTGGGTCAC 0.466879 -97 TTGCCAGTAGCGCGGGCCCACTCGTGCCTAC 26 36 1 CGCGGGCCAC 0.760007 -75 TCACCGCCCCCCGAGGTTCCCGATCGCGCCC 28 23 0 CCGAGGTCCC 0.874479 -278 CGAATCCCACCGAGGGCACCAAGCGAACGCA 28 149 1 CGAGGGCCCA 0.531005 -152 GGGCACCAAGCGAACGCACCCGGAAAGCGCC 28 162 1 CGAACGCCCC 0.900342 -139 GTAGGGAACCCGAAGGACCACGCC 35 4 0 CGAAGGACAC 0.757873 -87 TGGCAGGCTCCGAACGTGCCCCAAATCGGGT 37 182 1 CGAACGTCCC 0.872033 -119 ******* *** Masking position 9 Map Score: 23.5251 Number of sites scoring better than the average of aligned sites = 10346 Number in coding regions = 9527 Number in noncoding regions = 819 Number of orfs with sites within 600 bp upstream = 591 Fraction of orfs with sites within 600 bp upstream = 0.0949245