AlignACE version 2.2 July 7, 1998 alignACE -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -icrp_mtub_opreg_100.orf -g0.656 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.656 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 Rv0110 147 hypothetical protein Rv0110 #2 Rv0415 129 hypothetical protein Rv0415 #3 Rv0458 67 hypothetical protein Rv0458 #4 Rv0476 111 hypothetical protein Rv0476 #5 regX3 227 regX3 #6 tcrA 56 tcrA #7 galT' 128 galT' #8 phoP 141 phoP #9 Rv0903c 130 hypothetical protein Rv0903c #10 Rv0981 300 hypothetical protein Rv0981 #11 Rv1033c 181 hypothetical protein Rv1033c #12 Rv1234 149 hypothetical protein Rv1234 #13 Rv1343c 44 hypothetical protein Rv1343c #14 ansA 51 ansA #15 mmpL6 138 mmpL6 #16 ilvA 34 ilvA #17 lprJ 300 lprJ #18 Rv1691 38 hypothetical protein Rv1691 #19 Rv1903 89 hypothetical protein Rv1903 #20 Rv2000 70 hypothetical protein Rv2000 #21 fabG3 75 fabG3 #22 Rv2041c 37 hypothetical protein Rv2041c #23 pncA 40 pncA #24 Rv2044c 85 hypothetical protein Rv2044c #25 lipT 48 lipT #26 Rv2250c 120 hypothetical protein Rv2250c #27 Rv2358 181 hypothetical protein Rv2358 #28 ugpA 86 ugpA #29 infB 85 infB #30 Rv2840c 126 hypothetical protein Rv2840c #31 ilvB 300 ilvB #32 pknK 51 pknK #33 mtrA 69 mtrA #34 tmk 96 tmk #35 sahH 104 sahH #36 lpdA 202 lpdA #37 cdd 236 cdd #38 Rv3329 59 hypothetical protein Rv3329 #39 Rv3330 68 hypothetical protein Rv3330 #40 sugI 95 sugI #41 alr 293 alr #42 rmlB2 22 rmlB2 #43 Rv3675 164 hypothetical protein Rv3675 #44 Rv3676 98 hypothetical protein Rv3676 #45 glpK 49 glpK #46 Rv3697c 250 hypothetical protein Rv3697c #47 Rv3765c 300 hypothetical protein Rv3765c #48 Rv3920c 71 hypothetical protein Rv3920c #49 rpmH 300 rpmH Motif number 1 CACCATTGTTGCCTGCGCCGTTGGGCGGGA 1 21 0 GCCTGCGCCG 0.789807 -127 CCAGCTCATCGGAGTCGCCCACCTGCTATC 1 63 1 GGAGTCGCCC 0.839706 -85 TATCGCCATCCCGGGCGCCGGACCTACGTC 1 89 1 CCGGGCGCCG 0.645231 -59 GACCTACGTCCGCTGCACCCGATGTGATCG 1 109 1 CGCTGCACCC 0.542931 -39 TCTCAGACCCCGCTCCCGGGACTCCCGTGT 2 47 0 CGCTCCCGGG 0.606529 -83 CCTTGACCTCCCTTCGCCGGCATGATCCG 2 111 0 CCCTTCGCCG 0.808616 -19 AAGCCATTGTGGCCCCGGCGGTAGTGTGAG 3 13 1 GGCCCCGGCG 0.596643 -55 ATGATTTTGACGAGGAGCCGAATACG 3 52 1 CGAGGAGCCG 0.895816 -16 CCATCGACTCCGAGTCGCCCACGGGGCGAC 4 26 1 CGAGTCGCCC 0.920728 -86 ACGTCGACTCCGAGTCGCCCCGTGGGCGAC 4 39 0 CGAGTCGCCC 0.920728 -73 CCTGCGCCGACGACGATGCAGA 5 3 1 TGCGCCGACG 0.94161 -225 ATCAGCGCCACTCTCCCCCGCAAGCGGGTG 5 56 0 CTCTCCCCCG 0.762689 -172 GCTGATGACCTGCGCCGACGACGATGCAGA 5 80 1 TGCGCCGACG 0.94161 -148 ATCAGCGCCACTCTCCCCCGCAAGCGGGTG 5 133 0 CTCTCCCCCG 0.762689 -95 GCTGATGACCTGCGCCGACGACGATGCAGA 5 157 1 TGCGCCGACG 0.94161 -71 CAGCGCCACTCTCCCCCGCAAGCGGGTG 5 210 0 CTCTCCCCCG 0.762689 -18 GACGGTGTGCGGCTCCGACGGTAGGG 6 41 1 GGCTCCGACG 0.937198 -16 GGCGGCTCGCCGCGCCGCCGGGAGACGATG 7 15 0 CGCGCCGCCG 0.782579 -114 GGCGGCGCGGCGAGCCGCCCCAAAACCAAC 7 26 1 CGAGCCGCCC 0.963578 -103 TAGCTGAGGTGGCGTCGCGGCCCTCACCGG 7 79 1 GGCGTCGCGG 0.884521 -50 GATCCTCTGTGGTGTCGCCGGTGAGGGCCG 7 96 0 GGTGTCGCCG 0.651835 -33 CGGATCGGCCCGAGATCCTCT 7 118 0 GGATCGGCCC 0.808642 -11 AGTGTATTCACGGCGCGCCGTGGATTGAGC 8 17 1 CGGCGCGCCG 0.499372 -125 CCCGCGCGCACCCCGCGAGCAGAC 9 5 1 CGCGCACCCC 0.772081 -126 GGTGGGAGGGTGAGCCGCCGGGTCGCGTGC 9 88 0 TGAGCCGCCG 0.977954 -43 TTTGTGCCTGCGCCCAGGCGTGGAACGGCA 10 37 0 CGCCCAGGCG 0.561913 -264 AGGCGAAACCCGCGCGGACGAGAACTCTTC 10 133 1 CGCGCGGACG 0.88235 -168 GCCTGAGAGGCGCGCCGTGGTATGCGGGTT 10 255 0 CGCGCCGTGG 0.859675 -46 CAGTCTCAGGCGCTGCGACGACACTG 10 285 1 CGCTGCGACG 0.909613 -16 CCGGGTATACGGAGCCCCCGGTGGACCGG 11 10 0 GGAGCCCCCG 0.867812 -172 CGGGATGTCGGGCTTCGGCGGTGAGAAAGC 11 52 0 GGCTTCGGCG 0.717899 -130 ACTCAACCCGCGAGCGACCGAGGCCCACCG 12 47 0 CGAGCGACCG 0.695641 -103 CTGAAAAAGGGGGGCGGAGGAGAATGAGAA 12 127 1 GGGGCGGAGG 0.549504 -23 CGCGCCCGGGCGCCCAATAGAG 13 3 1 CGCCCGGGCG 0.498031 -42 AGGGCCGATATGGCCCGCCCAGACCCCGCG 14 27 1 TGGCCCGCCC 0.702968 -25 CCGCCCAGACCCCGCGGCCGG 14 41 1 CCCGCGGCCG 0.840139 -11 CCTCAGGCGGGGATCCGCGGATTCAACAGT 15 62 0 GGATCCGCGG 0.882461 -77 GCCTGAGGTACGGGGCGTGGTCGCGCCCCG 15 84 1 CGGGGCGTGG 0.420953 -55 GGGGCGTGGTCGCGCCCCGGGCAATAGCGT 15 95 1 CGCGCCCCGG 0.825967 -44 ATTGGGATAGGGCGGCGTGGCACCATTGAC 16 13 1 GGCGGCGTGG 0.486512 -22 GGCATTTCCCCCGGCCACCGACTAGTCGTG 17 72 0 CCGGCCACCG 0.542714 -229 GTGGACTTCACGATCCACCGGATGCGGGAT 17 104 0 CGATCCACCG 0.837978 -197 GGGGGACGATCGGCCCGCGGTGCCCCCCTA 17 139 1 CGGCCCGCGG 0.624238 -162 TTACGGGGGTTGCTGCGCCCCGTAACTA 18 9 0 TGCTGCGCCC 0.765624 -30 GCGTACCGGGCGCGGCACCGCGAGTCCGGG 19 23 1 CGCGGCACCG 0.590039 -67 CACGGACATGCGAGCCGCCGCTGTTCGCCA 19 57 0 CGAGCCGCCG 0.924366 -33 GCAAACTGCCCGGGCAGTCGCCCGAACGTA 23 11 1 CGGGCAGTCG 0.601117 -30 CAGGTCGCGGCGCTCCGGCCACTGACAGAA 24 16 0 CGCTCCGGCC 0.874826 -70 ACAGGCTAGCCGCCCCGCCCCCATTCCTGC 25 15 1 CGCCCCGCCC 0.695833 -34 CGCCCTGTCGGGGGCAGACCACG 26 4 0 GGGGCAGACC 0.593442 -117 GCAGCTGCGCCCGTCCGCCCTGTCGGGGGC 26 19 0 CCGTCCGCCC 0.769568 -102 GCTGCACCTGCGCGGGGTCGAGTTCGGGCT 26 44 1 CGCGGGGTCG 0.511271 -77 TAGCGGACTCGGAGCAGCCCGAACTCGACC 26 59 0 GGAGCAGCCC 0.908794 -62 GCTTCAGCAACGACCGGACGCCATCAGAAA 26 101 1 CGACCGGACG 0.714191 -20 TTCGAGGGATCGGGCAGACGCGCGCAGCCC 27 15 1 CGGGCAGACG 0.873514 -167 CGGGCAGACGCGCGCAGCCCGACACGACTA 27 25 1 CGCGCAGCCC 0.940332 -157 TGATGTTTTGCGCGTAGTCGTGTCGGGCTG 27 39 0 CGCGTAGTCG 0.571992 -143 CTAAACCCGAGGCGCGGCCCACGACTGTCG 29 46 1 GGCGCGGCCC 0.885709 -40 CGGGCAAGCCCGATTGCCCGGCTATCTGCC 30 29 0 CGATTGCCCG 0.449845 -98 CGGGCAATCGGGCTTGCCCGGTGACGCTAC 30 39 1 GGCTTGCCCG 0.410231 -88 ATCCGGGCGTCGATGCGCCGAGGCCGAAGG 30 92 0 CGATGCGCCG 0.919016 -35 CGGTCCGCGGGGATTATCCG 30 117 0 CGGTCCGCGG 0.908416 -10 TGCGAATTTTCGCGGTGGCGTTACGCTCGC 31 26 0 CGCGGTGGCG 0.676806 -275 CAGGCACCAACGCGCCGACCAATTACTACG 31 174 0 CGCGCCGACC 0.962545 -127 TGGTGATACCCTCCCGGCCGAGGATAGTGA 32 26 1 CTCCCGGCCG 0.787586 -26 CTCCCACCCGCGAGCAGACGCAAAATCGCC 34 15 1 CGAGCAGACG 0.935276 -82 GGTGGCGGCGCGAGCAGACGCAAAATCGCC 34 63 0 CGAGCAGACG 0.935276 -34 CGGCCCTGTCGGTGGCGGCGCGAGCAGACG 34 73 0 GGTGGCGGCG 0.426531 -24 GGCGCGGCCCTGTCGGTGGC 34 87 0 GGCGCGGCCC 0.885709 -10 TAGCCGCCGTCGGTCAGCCCCGCAGG 35 7 0 CGGTCAGCCC 0.845545 -98 TGCAGTCACTGTAGCCGCCGTCGGTCAGCC 35 18 0 GTAGCCGCCG 0.888174 -87 GGGTACCACCCGAGCCCCCGCCGTCTAAGC 36 19 0 CGAGCCCCCG 0.755833 -184 TGGTACCCATCGCGCCGCGCTGCGGTGCGG 36 41 1 CGCGCCGCGC 0.966723 -162 CACAGCTTGACGATGACCCGCACCGCAGCG 36 58 0 CGATGACCCG 0.604289 -145 AGCGGCGTGAGGAGGAGCCGAGCAGTCAAG 36 88 0 GGAGGAGCCG 0.902746 -115 CGATGCACGCCGCGCAGCGGCGTGAGGAGG 36 103 0 CGCGCAGCGG 0.96299 -100 TCCAACACAGCTCGGCGACGATGCACGCCG 36 121 0 CTCGGCGACG 0.739317 -82 AGCGGCGTGAGGAGGAGCCGAGCAGTCCAA 36 146 0 GGAGGAGCCG 0.902746 -57 CGATGCACGCCGCGCAGCGGCGTGAGGAGG 36 161 0 CGCGCAGCGG 0.96299 -42 CATAACCTAGCTCGGCGACGATGCACGCCG 36 179 0 CTCGGCGACG 0.739317 -24 CCCCGATACAGGGTCCGAGGTGGCCGCCGC 37 21 1 GGGTCCGAGG 0.520091 -216 ACAACCGTCTCGCGCGGGCGGCGGCCACCT 37 38 0 CGCGCGGGCG 0.570782 -199 AAGTTAAGCTCGATTGCCCGGCTCTAGCTG 37 114 0 CGATTGCCCG 0.449845 -123 GATCGTGTGTGGATCCGGGGTTAGGCTGGC 37 180 1 GGATCCGGGG 0.614195 -57 CCCCGCTCGTCGATGGGCCGACTAAGAAAA 37 210 0 CGATGGGCCG 0.806915 -27 GGCCCGACCGCGAGGAGCCGCGCTGTGACT 39 24 0 CGAGGAGCCG 0.895816 -45 TCCTCGCGGTCGGGCCGCCGATCACCTACT 39 38 1 CGGGCCGCCG 0.607282 -31 CCGGCTAGGATGCCCGCCCGCAAACGACGC 40 32 0 TGCCCGCCCG 0.557194 -64 GGCGGGCATCCTAGCCGGCCTTGGTCGGCA 40 44 1 CTAGCCGGCC 0.577905 -52 GCGGTCAACCGCTGGTCAAGC 40 85 0 CGGTCAACCG 0.516765 -11 CCACGGGTGATGGGCCGCGGTCAAGCTACG 41 89 1 TGGGCCGCGG 0.883851 -205 AATAGAGTGCGGATCGGCCGGCATGAATTG 41 126 0 GGATCGGCCG 0.92149 -168 CCAACCATCATGCGGCACCGGCAATCTGAG 41 160 1 TGCGGCACCG 0.663735 -134 GGTTGGTTGCCGATCACCCGGTGTTTGGCT 41 188 0 CGATCACCCG 0.819388 -106 GGGCTGCAGCCGTGTCGGCGTGACTGTCCT 41 228 0 CGTGTCGGCG 0.452161 -66 CCGATTGCCCCGGGTCGCGGTGCTGGGCTG 41 252 0 CGGGTCGCGG 0.806406 -42 GCCCACCATACCGGCGGCCC 42 1 0 CCGGCGGCCC 0.664892 -22 GCCGCCGGTATGGTGGGCCG 42 13 1 TGGTGGGCCG 0.615541 -10 TCGCCGCGCCCGTCGCACCAA 43 2 1 CGCCGCGCCC 0.578158 -163 TTTCTGCAGACCAGCGCCCGGGCACGTCGG 43 43 1 CCAGCGCCCG 0.63876 -122 GCCAGCGGCGCGTGCCGCCGACGTGCCCGG 43 60 0 CGTGCCGCCG 0.810737 -105 GTAGGCCAACCGGTTCGCCGTGCCAACG 44 9 0 CGGTTCGCCG 0.747479 -90 CGGCGTCGGACCCGCCGCTGCGGTGGA 45 8 1 GGACCCGCCG 0.86614 -42 TTGCGCTCCTCGCGCTGGCGTCGTTTCAAC 46 81 0 CGCGCTGGCG 0.860231 -170 AATTCGGAGGCGAGCTGCCCTAACGTTTTG 46 108 0 CGAGCTGCCC 0.776635 -143 GTTTGGAGGAGGCTCGGCCGCCAGAGCTTG 46 145 0 GGCTCGGCCG 0.901721 -106 AGTCGGCAGTCGACCAGCGGATGTCAACGT 46 173 0 CGACCAGCGG 0.764756 -78 ACTGCCGACTTGCGGCCCCGTGTGGATCTT 46 193 1 TGCGGCCCCG 0.86743 -58 CCGGGTCGGCGACTTCCACAA 47 2 1 CGGGTCGGCG 0.536023 -299 TTGGTCGCTCTCCGTCGCCGTTGTGGAAGT 47 22 0 TCCGTCGCCG 0.616739 -279 AAGCAAATCCCGCTGCCACGCTTGAGGCAG 47 71 0 CGCTGCCACG 0.651624 -230 AGCCCGGTCGCCAGCAGCCGCTACTGGTAC 47 105 1 CCAGCAGCCG 0.914204 -196 TACCAACATGCGCGCCGACGTGAGTGGGGT 47 132 1 CGCGCCGACG 0.953557 -169 GGTACCGCCCGGATCCGGCCCGCTGGCAGG 47 159 1 GGATCCGGCC 0.719128 -142 GCATGGCGTCTGCTCAGCCGTGTGCGGATA 47 236 1 TGCTCAGCCG 0.895454 -65 TACGACACGCTCAACCGAGATGCGGTG 47 284 0 CGCTCAACCG 0.760074 -17 CAATCCTTCCGGGCAGCCGGGCAGGCGGT 48 10 1 CGGGCAGCCG 0.701568 -62 GGTCAAACCTCGCCCACCCGGCAACCGCTT 49 94 0 CGCCCACCCG 0.519392 -207 ACTAATCCAGGTCGCAGCCGCATCGCCGAC 49 164 0 GTCGCAGCCG 0.833561 -137 GTCCAGGGACCGCGCCGGCCAGCAGCGAAA 49 192 1 CGCGCCGGCC 0.787853 -109 CTCCGACTGTCCCGCGGGCCAATCGAGTTG 49 227 1 CCCGCGGGCC 0.61868 -74 TGGAAGGCAGTGAGTGGCCGGATGGTGATG 49 255 1 TGAGTGGCCG 0.679725 -46 CCAGACATAGCGAGGAGACGCCC 49 288 1 CGAGGAGACG 0.83167 -13 ********** Masking position 9 Map Score: 187.531 Number of sites scoring better than the average of aligned sites = 74164 Number in coding regions = 69168 Number in noncoding regions = 4996 Number of orfs with sites within 600 bp upstream = 1557 Fraction of orfs with sites within 600 bp upstream = 0.25008 Motif number 2 TGCCTGCGCCGTTGGGCGGGATGCAACACG 1 12 0 GTTGGGCGGG 0.402949 -136 GGACGTAGGTCCGGCGCCCGGGATGGCGAT 1 90 0 CCGGCGCCCG 0.854111 -58 ACTCTCAGACCCCGCTCCCGGGACTCCCGT 2 49 0 CCCGCTCCCG 0.930303 -81 ACGGTAAGGGCAGGCGCGCCCACTCTCAGA 2 70 0 CAGGCGCGCC 0.95835 -60 TACCGTCACACCTGATCCGGATCATGCCGG 2 94 1 CCTGATCCGG 0.684141 -36 GGAAGCCATTGTGGCCCCGGCGGTAGTGTG 3 11 1 GTGGCCCCGG 0.448545 -57 TGATTTTGACGAGGAGCCGAATACG 3 53 1 GAGGAGCCGA 0.444445 -15 CGATGGTGATTCGGAGCCCGA 4 2 0 TCGGAGCCCG 0.681311 -110 CCTGCGCCGACGACGATGCA 5 1 1 CCTGCGCCGA 0.858168 -227 GCGCTGATGACCTGCGCCGACGACGATGCA 5 78 1 CCTGCGCCGA 0.858168 -150 GCGCTGATGACCTGCGCCGACGACGATGCA 5 155 1 CCTGCGCCGA 0.858168 -73 GTGACGGTGTGCGGCTCCGACGGTAGGG 6 39 1 GCGGCTCCGA 0.585388 -18 TCGTCTCCCGGCGGCGCGGCGAGCCGCCCC 7 17 1 GCGGCGCGGC 0.503102 -112 TGTCGCCGGTGAGGGCCGCGACGCCACCTC 7 84 0 GAGGGCCGCG 0.778656 -45 CGCTCAATCCACGGCGCGCCGTGAATACAC 8 18 0 ACGGCGCGCC 0.942229 -124 CCCGCGCGCACCCCGCGAGC 9 1 1 CCCGCGCGCA 0.921274 -130 CGACTCTGTGTCTGCTCGCGGGGTGCGCGC 9 14 0 TCTGCTCGCG 0.87766 -117 CGACTCTGTGTCTGCTCGCCCAGCACGCGA 9 66 1 TCTGCTCGCC 0.840217 -65 GGGTGAGCCGCCGGGTCGCGTGCTGGGCGA 9 81 0 CCGGGTCGCG 0.941541 -50 GCGGTTTGTGCCTGCGCCCAGGCGTGGAAC 10 41 0 CCTGCGCCCA 0.928158 -260 GCAGGCGAAACCCGCGCGGACGAGAACTCT 10 131 1 CCCGCGCGGA 0.503394 -170 ACTGGCCTGAGAGGCGCGCCGTGGTATGCG 10 259 0 GAGGCGCGCC 0.95852 -42 TTCCGGGTATACGGAGCCCCCGGTGGACCG 11 12 0 ACGGAGCCCC 0.59515 -170 TGAAAAGGTGACCGGGCGGGATGTCGGGCT 11 68 0 ACCGGGCGGG 0.747423 -114 TCCCGGCAACGATGCTCGCCGTTCGGTGGG 12 24 1 GATGCTCGCC 0.863581 -126 GTGGGCCTCGGTCGCTCGCGGGTTGAGTGG 12 49 1 GTCGCTCGCG 0.673489 -101 CTCATTCTCCTCCGCCCCCCTTTTTCAGCG 12 125 0 TCCGCCCCCC 0.754724 -25 CTATTGGGCGCCCGGGCGCG 13 1 0 CCCGGGCGCG 0.896855 -44 GGCCGCGGGGTCTGGGCGGGCCATATCGGC 14 30 0 TCTGGGCGGG 0.763312 -22 CGTTGTGGTGTCCGGTCCCGTACCGTACTG 15 36 1 TCCGGTCCCG 0.683654 -103 TGTTGAATCCGCGGATCCCCGCCTGAGGTA 15 64 1 GCGGATCCCC 0.786088 -75 ACGCTATTGCCCGGGGCGCGACCACGCCCC 15 95 0 CCGGGGCGCG 0.926188 -44 CGGGGGACGATCGGCCCGCGGTGCCCCCCT 17 138 1 TCGGCCCGCG 0.888773 -163 TACGGGGGTTGCTGCGCCCCGTAACTA 18 8 0 GCTGCGCCCC 0.964091 -31 GACTCGCGGTGCCGCGCCCGGTACGCCACG 19 19 0 GCCGCGCCCG 0.835291 -71 GCGAACAGCGGCGGCTCGCATGTCCGTGGC 19 59 1 GCGGCTCGCA 0.949865 -31 ATGTCCGTGGCAGGATCGGGCA 19 78 1 CAGGATCGGG 0.655038 -12 CGTTCGGGCGACTGCCCGGGCAGTTTGC 23 9 0 ACTGCCCGGG 0.778062 -32 CTGTCAGTGGCCGGAGCGCCGCGACCTGGA 24 18 1 CCGGAGCGCC 0.861293 -68 CGACAGGCTAGCCGCCCCGCCCCCATTCCT 25 13 1 GCCGCCCCGC 0.49061 -36 CGTGGTCTGCCCCCGACAGGGCGGA 26 6 1 TCTGCCCCCG 0.752783 -115 CGCAGGTGCAGCTGCGCCCGTCCGCCCTGT 26 26 0 GCTGCGCCCG 0.973248 -95 CGCAGCTGCACCTGCGCGGGGTCGAGTTCG 26 40 1 CCTGCGCGGG 0.813593 -81 TCGAGTTCGGGCTGCTCCGAGTCCGCTAGG 26 61 1 GCTGCTCCGA 0.842856 -60 GTCGTGTCGGGCTGCGCGCGTCTGCCCGAT 27 23 0 GCTGCGCGCG 0.983056 -159 AGCTAAACCCGAGGCGCGGCCCACGACTGT 29 44 1 GAGGCGCGGC 0.837363 -42 GCCGAGGCCGAAGGCTCGCGCTGGATCACG 30 76 0 AAGGCTCGCG 0.764042 -51 TCCGGGCGTCGATGCGCCGAGGCCGAAGGC 30 91 0 GATGCGCCGA 0.752953 -36 TCGGCGCATCGACGCCCGGATAATCCCCGC 30 101 1 GACGCCCGGA 0.717216 -26 GCGGTGGCGTTACGCTCGCGAACTCGACGC 31 15 0 TACGCTCGCG 0.758526 -286 GCAGTGCCGTCACGCTCGCGGATCAAGACT 31 65 1 CACGCTCGCG 0.931144 -236 GTCAGGCACCAACGCGCCGACCAATTACTA 31 176 0 AACGCGCCGA 0.48512 -125 GCTGCTGCACGAGGGTCGCGTTGGTGCTCG 31 215 0 GAGGGTCGCG 0.837514 -86 CGATTTTGCGTCTGCTCGCGGGTGGGAGGC 34 13 0 TCTGCTCGCG 0.87766 -84 CGATTTTGCGTCTGCTCGCGCCGCCACCGA 34 65 1 TCTGCTCGCG 0.87766 -32 CCGCCACCGACAGGGCCGCGCC 34 85 1 CAGGGCCGCG 0.77864 -12 GGCTAAGTAGCCCGCTCGGATCCCTGTGAG 35 60 1 CCCGCTCGGA 0.552738 -45 ATGGGTACCACCCGAGCCCCCGCCGTCTAA 36 21 0 CCCGAGCCCC 0.761972 -182 GACCCGCACCGCAGCGCGGCGCGATGGGTA 36 44 0 GCAGCGCGGC 0.699737 -159 GCTGTGCTTGACTGCTCGGCTCCTCCTCAC 36 82 1 ACTGCTCGGC 0.790262 -121 TCCTCACGCCGCTGCGCGGCGTGCATCGTC 36 105 1 GCTGCGCGGC 0.84003 -98 GCTGTGTTGGACTGCTCGGCTCCTCCTCAC 36 140 1 ACTGCTCGGC 0.790262 -63 TCCTCACGCCGCTGCGCGGCGTGCATCGTC 36 163 1 GCTGCGCGGC 0.84003 -40 CTCCCCGATACAGGGTCCGAGGTGGCCGCC 37 19 1 CAGGGTCCGA 0.482594 -218 CGAGGTGGCCGCCGCCCGCGCGAGACGGTT 37 36 1 GCCGCCCGCG 0.922022 -201 ACTTGGCCAGGTTGCCCGCGGTGTCGAACA 37 140 1 GTTGCCCGCG 0.47299 -97 CACACACGATCCCGATCGGACTGTTCGACA 37 161 0 CCCGATCGGA 0.462801 -76 CCCGCTCGTCGATGGGCCGACTAAGAAAAG 37 209 0 GATGGGCCGA 0.488907 -28 TCGGCCCATCGACGAGCGGGGTTGCCGA 37 219 1 GACGAGCGGG 0.683826 -18 AGCGCAGCGCTAGGCTCGGGCAATGACCTC 38 12 0 TAGGCTCGGG 0.754707 -48 TGATCGGCGGCCCGACCGCGAGGAGCCGCG 39 32 0 CCCGACCGCG 0.796311 -37 GGCTAGGATGCCCGCCCGCAAACGACGCCG 40 30 0 CCCGCCCGCA 0.904327 -66 TGCACGGGCGCAATAGGTTCAC 41 3 1 CACGGGCGCA 0.740948 -291 TGCCACGGGTGATGGGCCGCGGTCAAGCTA 41 87 1 GATGGGCCGC 0.668826 -207 GCGGTCAAGCTACGCTCCCGTCAATTCATG 41 105 1 TACGCTCCCG 0.661439 -189 TCAATAGAGTGCGGATCGGCCGGCATGAAT 41 128 0 GCGGATCGGC 0.512068 -166 CCCGATTGCCCCGGGTCGCGGTGCTGGGCT 41 253 0 CCGGGTCGCG 0.941541 -41 TCGCCGCGCCCGTCGCACCAAG 43 3 1 GCCGCGCCCG 0.835291 -162 CTGCAGAAACCCGGCTCGCCTTGGTGCGAC 43 22 0 CCGGCTCGCC 0.957083 -143 TTTCTGCAGACCAGCGCCCGGGCACGTCGG 43 43 1 CCAGCGCCCG 0.807635 -122 ACGTCGGCGGCACGCGCCGCTGGCTTCGAT 43 66 1 CACGCGCCGC 0.705774 -99 CACCGCAGCGGCGGGTCCGACGCCG 45 6 0 GCGGGTCCGA 0.589141 -44 GCGTCGTTTCAACGCCCGCAGTATGTCGTC 46 64 0 AACGCCCGCA 0.387279 -187 ACGCCAGCGCGAGGAGCGCAAAACGTTAGG 46 90 1 GAGGAGCGCA 0.613269 -161 AAACGTTAGGGCAGCTCGCCTCCGAATTGC 46 110 1 GCAGCTCGCC 0.719222 -141 ACGTTTGGAGGAGGCTCGGCCGCCAGAGCT 46 147 0 GAGGCTCGGC 0.890574 -104 CAAGATCCACACGGGGCCGCAAGTCGGCAG 46 194 0 ACGGGGCCGC 0.673124 -57 CCGGGTCGGCGACTTCCACA 47 1 1 CCGGGTCGGC 0.550017 -300 GCTTCAGCAGCCCGGTCGCCAGCAGCCGCT 47 97 1 CCCGGTCGCC 0.906841 -204 CTGGTACCAACATGCGCGCCGACGTGAGTG 47 128 1 CATGCGCGCC 0.924727 -173 GGGGTACCGCCCGGATCCGGCCCGCTGGCA 47 157 1 CCGGATCCGG 0.48305 -144 GGCCCGCTGGCAGGCTCCGAACGTGCCCCA 47 175 1 CAGGCTCCGA 0.743044 -126 TGTGGGACCGCCTGCCCGGCTGCCCGGAAG 48 16 0 CCTGCCCGGC 0.864194 -56 TAGTCCAGGGACCGCGCCGGCCAGCAGCGA 49 190 1 ACCGCGCCGG 0.698432 -111 ********** Masking position 4 Map Score: 151.494 Number of sites scoring better than the average of aligned sites = 53706 Number in coding regions = 49810 Number in noncoding regions = 3896 Number of orfs with sites within 600 bp upstream = 1344 Fraction of orfs with sites within 600 bp upstream = 0.215869 Motif number 3 CAACAATGGTGCGATGAGTGGCGCCAGCTCATC 1 40 1 GCAGGTGGCG 0.94139 -108 TGACGGTAAGGGCAGGCGCGCCCACTCTCAGAC 2 69 0 GGAGGCGCCC 0.746979 -61 CGACGACGATGCAGAGCGTAGCGATGAGGTGGG 5 18 1 GCGGGTAGCG 0.966551 -210 GTAGCGATGAGGTGGGGGCACCACCCGCTTGCG 5 35 1 GGGGGCACCA 0.943355 -193 CCCGCTTGCGGGGGAGAGTGGCGCTGATGACCT 5 58 1 GGGGGTGGCG 0.993118 -170 CGACGACGATGCAGAGCGTAGCGATGAGGTGGG 5 95 1 GCGGGTAGCG 0.966551 -133 GTAGCGATGAGGTGGGGGCACCACCCGCTTGCG 5 112 1 GGGGGCACCA 0.943355 -116 CCCGCTTGCGGGGGAGAGTGGCGCTGATGACCT 5 135 1 GGGGGTGGCG 0.993118 -93 CGACGACGATGCAGAGCGTAGCGATGAGGTGGG 5 172 1 GCGGGTAGCG 0.966551 -56 GTAGCGATGAGGTGGGGGCACCACCCGCTTGCG 5 189 1 GGGGGCACCA 0.943355 -39 CCCGCTTGCGGGGGAGAGTGGCGCTG 5 212 1 GGGGGTGGCG 0.993118 -16 TGGTGTCGCCGGTGAGGGCCGCGACGCCACCTC 7 84 0 GGGGGCCGCG 0.912497 -45 GGCGCGCCGTGGATTGAGCGGCAACGGTCCAAG 8 28 1 GGTGGCGGCA 0.94966 -114 GTCTGCTCGCGGGGTGCGCGCGGG 9 2 0 GGGGGCGCGG 0.822573 -129 GTGAGCCGCCGGGTCGCGTGCTGGGCGAGCAGA 9 76 0 GGTGGTGCTG 0.603162 -55 CAGCAGGGTGGGAGGGTGAGCCGCCGGGTCGCG 9 91 0 GGGGGAGCCG 0.834899 -40 AACCCCAGGTGCAGTGTGCACCACGTTCCACCA 10 79 0 GCGGGCACCA 0.912635 -222 AGACTGGCCTGAGAGGCGCGCCGTGGTATGCGG 10 258 0 GAAGGCGCCG 0.589049 -43 CGGGTTGAGTGGATAGTGTGCCGGGAGTAGCTG 12 67 1 GGTGGTGCCG 0.948834 -83 GCCCAATAGAGCAGTGCGCGGTAACGTCGTGGG 13 22 1 GCGGGCGGTA 0.818286 -23 CCATTGGGATAGGGCGGCGTGGCACCATT 16 7 1 GGTGGCGGCG 0.98516 -28 CGCGTTAACCGGGTAGGGGGGCACCGCGGGCCG 17 149 0 GGTGGGGGCA 0.585895 -152 TAGTTACGGGGCGCAGCAACCCCCGTAA 18 6 1 ACGGGCAGCA 0.225978 -33 GACTCGCGGTGCCGCGCCCGGTACGCCACGATG 19 16 0 GCGGCCGGTA 0.550231 -74 CGGGGACATGGCGAACAGCGGCGGCTCGCATGT 19 49 1 GCACGCGGCG 0.681195 -41 TTCTGTCAGTGGCCGGAGCGCCGCGACCTGGAA 24 16 1 GGCGGCGCCG 0.925234 -70 AGTGCAGGAATGGGGGCGGGGCGGCTAGCCTGT 25 15 0 TGGGGGGGCG 0.559116 -34 GCGGCATGCGCAGTGCAGGAATGGG 25 34 0 GGAGGCAGTG 0.588266 -15 TGAAGCAGGTTGTGGGCCTAGCGGACTCGGAGC 26 74 0 TGGGCTAGCG 0.406864 -47 GTATTCTGTCGGCGAGTTTGCCGCCACGGTCGA 28 47 0 GGGGTTGCCG 0.74749 -40 CGGGCAATCGGGCTTGCCCGGTGACGCTACACT 30 39 1 GGTGCCGGTG 0.596542 -88 CTGGATCACGGCTAAGTGTAGCGTCACCGGGCA 30 53 0 GCAGGTAGCG 0.836661 -74 GCAGCGCGGCGCGATGGGTACCACCCGAGCCCC 36 31 0 GCAGGTACCA 0.464507 -172 ACGCCGCTGCGCGGCGTGCATCGTCGCCGAGCT 36 110 1 GCGGGCATCG 0.730682 -93 ACGCCGCTGCGCGGCGTGCATCGTCGCCGAGCT 36 168 1 GCGGGCATCG 0.730682 -35 ACAACCGTCTCGCGCGGGCGGCGGCCACCTCGG 37 35 0 CGGGGCGGCG 0.883909 -202 TCGTCGTGTTGGCGAGCGCAGCGCTAGGCTCGG 38 23 0 GGGGGCAGCG 0.989895 -37 GAGGAGCCGCGCTGTGACTGGCGGGACGAAAG 39 10 0 GCGGCTGGCG 0.960962 -59 GGCTCCTCGCGGTCGGGCCGCCGATCACCTACT 39 35 1 GGCGCCGCCG 0.772377 -34 ATCCTAGCCGGCCTTGGTCGGCACCGAAATCGG 40 51 1 GCTGTCGGCA 0.289125 -45 CCGAAATCGGGGCTTGACCAGCGGTTGACCGC 40 74 1 GGTGCCAGCG 0.851628 -22 GGAAACAGTTGCAGTGTGTACTATTCGCCCTAG 41 54 0 GCGGGTACTA 0.286246 -240 AATAGAGTGCGGATCGGCCGGCATGAATTGACG 41 123 0 GGTGCCGGCA 0.836713 -171 GCCTTGGTGCGACGGGCGCGGCGA 43 2 0 GAGGGCGGCG 0.931335 -163 ATCGAAGCCAGCGGCGCGTGCCGCCGACGTGCC 43 63 0 GCGGGTGCCG 0.981824 -102 CTCTGTCGTAGGTGACAGCGGCGAAGTCATCCA 43 97 0 GGGCGCGGCG 0.950538 -68 GTTGGCAAACGGTTAGTGTGCCCGTATCACTTC 44 54 1 GGTGGTGCCC 0.626958 -45 CCACCGCAGCGGCGGGTCCGACGCCG 45 4 0 GGGGCCGACG 0.676053 -46 GTTTGGAGGAGGCTCGGCCGCCAGAGCTTGCGC 46 142 0 GGTGCCGCCA 0.752901 -109 CGCGCATGTTGGTACCAGTAGCGGCTGCTGGCG 47 113 0 GGACGTAGCG 0.337274 -188 TGGGGCACGTTCGGAGCCTGCCAGCGGGCCGGA 47 172 0 TCGGCTGCCA 0.186003 -129 GTGGGTTCTTTGTGAGTGTGGCGGTCTCGGGTG 49 24 1 TGGGGTGGCG 0.88788 -277 GAGTTGGAAGGCAGTGAGTGGCCGGATGGTGAT 49 251 1 GCGGGTGGCC 0.891468 -50 GCGTCTCCTCGCTATGTCTGGCAACATCACCAT 49 276 0 GCAGCTGGCA 0.553481 -25 ** * * ****** Masking position 6 Map Score: 81.4804 Number of sites scoring better than the average of aligned sites = 24146 Number in coding regions = 22605 Number in noncoding regions = 1541 Number of orfs with sites within 600 bp upstream = 864 Fraction of orfs with sites within 600 bp upstream = 0.138773 Motif number 4 TGTTGCCTGCGCCGTTGGGCGGGATGCAACAC 1 13 0 GCCGTGGCGG 0.808298 -135 TGACGCTAGCGCGCTAGCGTGGAACCCTGTAG 2 15 1 GCGCTCGTGG 0.847134 -115 CACGGGAGTCCCGGGAGCGGGGTCTGAGAGTG 2 48 1 CCGGGCGGGG 0.821782 -82 GCAGAGCGTAGCGATGAGGTGGGGGCACCACC 5 28 1 GCGATGGTGG 0.956715 -200 ACTCTCCCCCGCAAGCGGGTGGTGCCCCCACC 5 45 0 GCAAGGGTGG 0.941402 -183 GCAGAGCGTAGCGATGAGGTGGGGGCACCACC 5 105 1 GCGATGGTGG 0.956715 -123 ACTCTCCCCCGCAAGCGGGTGGTGCCCCCACC 5 122 0 GCAAGGGTGG 0.941402 -106 GCAGAGCGTAGCGATGAGGTGGGGGCACCACC 5 182 1 GCGATGGTGG 0.956715 -46 ACTCTCCCCCGCAAGCGGGTGGTGCCCCCACC 5 199 0 GCAAGGGTGG 0.941402 -29 CCGCCGGGTCGCGTGCTGGGCGAGCAGACACA 9 72 0 GCGTGGGGCG 0.848629 -59 TTACCGTCCAGCAGGGTGGGAGGGTGAGCCGC 9 100 0 GCAGGGGGAG 0.38863 -31 GAAAAGGTGACCGGGCGGGATGTCGGGCTTCG 11 65 0 CCGGGGGATG 0.533528 -117 AACGATGCTCGCCGTTCGGTGGGCCTCGGTCG 12 31 1 GCCGTGGTGG 0.943959 -119 CGCTGAAAAAGGGGGGCGGAGGAGAATGAGAA 12 125 1 GGGGGGGAGG 0.661555 -25 AGAGCAGTGCGCGGTAACGTCGTGGG 13 29 1 GCGGTCGTCG 0.896067 -16 CGCGCCCCGGGCAATAGCGTCGCCGGTTATCG 15 105 1 GCAATCGTCG 0.505538 -34 GGGGGGCACCGCGGGCCGATCGTCCCCCGATT 17 135 0 GCGGGGATCG 0.499208 -166 TGCGCGTTAACCGGGTAGGGGGGCACCGCGGG 17 152 0 CCGGGGGGGG 0.928466 -149 GCGCGGCACCGCGAGTCCGGGGACATGGCGAA 19 32 1 GCGAGCGGGG 0.912883 -58 GCGGCGGCTCGCATGTCCGTGGCAGGATCGGG 19 66 1 GCATGCGTGG 0.715984 -24 GGATGCCGTAGCCTTATCGAGGC 20 2 0 GCCTTCGAGG 0.241556 -69 CATGCGCAGTGCAGGAATGGGGGCGGGGCGGC 25 23 0 GCAGGTGGGG 0.34388 -26 GCGCCCGTCCGCCCTGTCGGGGGCAGACCACG 26 11 0 GCCCTCGGGG 0.478529 -110 TAATTGGTCGGCGCGTTGGTGCCTGACTAGCC 31 179 1 GCGCGGGTGC 0.640489 -122 CTCAGCTGCTGCACGAGGGTCGCGTTGGTGCT 31 217 0 GCACGGGTCG 0.830551 -84 GCGTCTGCTCGCGGGTGGGAGGCAC 34 4 0 GCGGGGGAGG 0.976318 -93 GGCGCGGCCCTGTCGGTGGCGGCGCGAGC 34 78 0 CCCTGGGTGG 0.553728 -19 TAGACGGCGGGGGCTCGGGTGGTACCCATCGC 36 22 1 GGGCTGGTGG 0.425154 -181 CCATCGCGCCGCGCTGCGGTGCGGGTCATCGT 36 47 1 GCGCTGGTGC 0.425099 -156 CGCCGCCCGCGCGAGACGGTTGTCGCCGTTGT 37 45 1 GCGAGGGTTG 0.894861 -192 GCGGCTCCTCGCGGTCGGGCCGCCGATCACCT 39 33 1 GCGGTGGCCG 0.858219 -36 CTAGACTGCCGCAGTTCCGGGGGAAGTGAACC 41 26 0 GCAGTCGGGG 0.766582 -268 TGCCGGTGCCGCATGATGGTTGGCGTCAATAG 41 151 0 GCATGGGTTG 0.529634 -143 GGGCCGCCGGTATGGTGGGCCG 42 7 1 CCGGTGGTGG 0.907073 -16 AGACCAGCGCCCGGGCACGTCGGCGGCACGCG 43 50 1 CCGGGCGTCG 0.784748 -115 CGTTGGCACGGCGAACCGGTTGGCCTACCTCT 44 11 1 GCGAAGGTTG 0.307088 -88 CACCGCAGCGGCGGGTCCGACGCCG 45 4 0 GCGGGCGACG 0.864059 -46 TTGAAACGACGCCAGCGCGAGGAGCGCAAAAC 46 82 1 GCCAGCGAGG 0.636361 -169 GCTTGCGCAAGCAATTCGGAGGCGAGCTGCCC 46 118 0 GCAATGGAGG 0.668637 -133 CCGGACCAACGCCAATTGGTCGCTCTCCGTCG 47 35 0 GCCAAGGTCG 0.266435 -266 ATTTGCTTCAGCAGCCCGGTCGCCAGCAGCCG 47 93 1 GCAGCGGTCG 0.434812 -208 TTCCGGGCAGCCGGGCAGGCGGTCCCACAAAC 48 17 1 CCGGGGGCGG 0.855408 -55 CCCCTCGTCTGCAGGCGGGTTGTGTTTGTGGG 48 40 0 GCAGGGGTTG 0.865963 -32 GTTTTGCGTTGTGGTGGGTTCTTTGTG 49 6 1 GCGTTGGTGG 0.906944 -295 GAGCAGCTTAGCGGGCAGGATGCCCTGAAGCG 49 67 1 GCGGGGGATG 0.86759 -234 TGAAGCGGTTGCCGGGTGGGCGAGGTTTGACC 49 92 1 GCCGGGGGCG 0.906447 -209 CCGAAAGTCGGCGATGCGGCTGCGACCTGGAT 49 158 1 GCGATGGCTG 0.467901 -143 CGATTGGCCCGCGGGACAGTCGGAGGTGGTTT 49 220 0 GCGGGAGTCG 0.579099 -81 ***** ***** Masking position 9 Map Score: 58.4828 Number of sites scoring better than the average of aligned sites = 14850 Number in coding regions = 13783 Number in noncoding regions = 1067 Number of orfs with sites within 600 bp upstream = 724 Fraction of orfs with sites within 600 bp upstream = 0.116287 Motif number 5 GGGCGACTCCGATGAGCTGGCGCCACTCATCG 1 51 0 GATGGTGGCG 0.82588 -97 AGGTCCGGCGCCCGGGATGGCGATAGCAGGTG 1 82 0 CCCGGTGGCG 0.948126 -66 GGAAGCCATTGTGGCCCCGGCGGTAG 3 5 1 GCCATTGGCC 0.235244 -63 ACTCCGAGTCGCCCCGTGGGCGACTCGGAGTC 4 31 0 GCCCGGGGCG 0.616225 -81 ACTCGGAGTCGACGTGTTGGATGCAAACCGCA 4 54 1 GACGGTGGAT 0.0781389 -58 AGAGCGTAGCGATGAGGTGGGGGCACCACCCG 5 30 1 GATGGTGGGG 0.357772 -198 AGAGCGTAGCGATGAGGTGGGGGCACCACCCG 5 107 1 GATGGTGGGG 0.357772 -121 AGAGCGTAGCGATGAGGTGGGGGCACCACCCG 5 184 1 GATGGTGGGG 0.357772 -44 TGTCTACCTCGCTGTGACGGTGTGCGGCTCCG 6 26 1 GCTGGCGGTG 0.790067 -31 GTGACGGTGTGCGGCTCCGACGGTAGGG 6 39 1 GCGGTCGACG 0.3941 -18 GGGGCGGCTCGCCGCGCCGCCGGGAGACGATG 7 15 0 GCCGGCGCCG 0.984919 -114 CGTAGGCATAGCTGAGGTGGCGTCGCGGCCCT 7 71 1 GCTGGTGGCG 0.983015 -58 GAGATCCTCTGTGGTGTCGCCGGTGAGGGCCG 7 96 0 GTGGGCGCCG 0.76824 -33 AACGGTCCAAGCTGATTTGGCGATTCCTGGCA 8 50 1 GCTGTTGGCG 0.927551 -92 GTGTCTGCTCGCGGGGTGCGCGCGGG 9 5 0 GCGGGGCGCG 0.280908 -126 AGGGTGGGAGGGTGAGCCGCCGGGTCGCGTGC 9 88 0 GGTGGCGCCG 0.705199 -43 TTACCGTCCAGCAGGGTGGGAGGGTGAGCCGC 9 100 0 GCAGGGGGAG 0.155492 -31 GGCCAATGTGGCTGATGTGGCTAAACCTCGTC 10 218 1 GCTGTTGGCT 0.375535 -83 ATCCCCTAGGGCCGATATGGCCCGCCCAGACC 14 20 1 GCCGTTGGCC 0.928877 -32 TTGGGATAGGGCGGCGTGGCACCATTGACCG 16 14 1 GCGGGGGCAC 0.419476 -21 CTTATCTTTGGCGGGTTTGGACTCCGCTGGTA 17 37 1 GCGGTTGGAC 0.490883 -264 GGACGATCGGCCCGCGGTGCCCCCCTACCCGG 17 142 1 CCCGGTGCCC 0.802391 -159 GGCCACTGTTGTCGAGGTGCCTTAAATGACGC 17 252 1 GTCGGTGCCT 0.27283 -49 TGTCCCCGGACTCGCGGTGCCGCGCCCGGTAC 19 25 0 CTCGGTGCCG 0.50995 -65 TGGACGAATCGGCGGTATGCCGACCACCATGA 21 16 1 GGCGTTGCCG 0.59241 -60 TCTGTCAGTGGCCGGAGCGCCGCGACCTGGAA 24 17 1 GCCGACGCCG 0.671828 -69 TGTGGGCCTAGCGGACTCGGAGCAGCCCGAAC 26 65 0 GCGGCCGGAG 0.306916 -56 GGCCGACATTGCCGTGACGGCGGTGATTGGTT 28 13 1 GCCGGCGGCG 0.991995 -74 TTATCCGGGCGTCGATGCGCCGAGGCCGAAGG 30 92 0 GTCGTCGCCG 0.609384 -35 GTAATTGGTCGGCGCGTTGGTGCCTGACTAGC 31 178 1 GGCGGTGGTG 0.478591 -123 CTGCACGAGGGTCGCGTTGGTGCTCGCTTGGG 31 209 0 GTCGGTGGTG 0.527355 -92 TCGTGCAGCAGCTGAGCTGGCGAGGGTTTTTT 31 233 1 GCTGGTGGCG 0.983013 -68 CCAGTTTTGTCCCGATGTGGTGACACC 33 53 1 CCCGTTGGTG 0.229534 -17 CGCGGCCCTGTCGGTGGCGGCGCGAGCAGACG 34 73 0 TCGGGCGGCG 0.59909 -24 CCTGCGGGGCTGACCGACGGCGGCT 35 4 1 GCGGGTGACC 0.583737 -101 GGGGGAAAGCTTAGACGGCGGGGGCTCGGG 36 9 1 GCTTGCGGCG 0.405345 -194 ATCGCGCCGCGCTGCGGTGCGGGTCATCGTCA 36 49 1 GCTGGTGCGG 0.781846 -154 TCATCGTCAAGCTGTGCTTGACTGCTCGGCTC 36 72 1 GCTGGTTGAC 0.0463333 -131 TCGTCGCCGAGCTGTGTTGGACTGCTCGGCTC 36 130 1 GCTGGTGGAC 0.79269 -73 CGATACAGGGTCCGAGGTGGCCGCCGCCCGCG 37 24 1 TCCGGTGGCC 0.60263 -213 GGCCAGGTTGCCCGCGGTGTCGAACAGTCCGA 37 144 1 CCCGGTGTCG 0.267573 -93 CCATCGACGAGCGGGGTTGCCGA 37 224 1 GCGGGTGCCG 0.972055 -13 GTTTCGTGTCGTCGTGTTGGCGAGCGCAGCGC 38 32 0 GTCGGTGGCG 0.93808 -28 GCTCCTCGCGGTCGGGCCGCCGATCACCTACT 39 36 1 GTCGGCGCCG 0.875787 -33 ACCAAGGCCGGCTAGGATGCCCGCCCGCAAAC 40 37 0 GCTAGTGCCC 0.23213 -59 TCAATAGAGTGCGGATCGGCCGGCATGAATTG 41 126 0 GCGGTGGCCG 0.707543 -168 CTGGGCTGCAGCCGTGTCGGCGTGACTGTCCT 41 228 0 GCCGGCGGCG 0.991996 -66 GCCCCGGGTCGCGGTGCTGGGCTGCAGCCGTG 41 244 0 GCGGGTGGGC 0.76538 -50 GGGCCGCCGGTATGGTGGGCCG 42 6 1 GCCGTTGGTG 0.695746 -17 GTGCCCGGGCGCTGGTCTGCAGAAACCCGGCT 43 36 0 GCTGTTGCAG 0.5143 -129 GGCGCGTGCCGCCGACGTGCCCGGGCGCTGGT 43 52 0 GCCGCTGCCC 0.601671 -113 CACCGCAGCGGCGGGTCCGACGCCG 45 4 0 GCGGTCGACG 0.394097 -46 CGGACCCGCCGCTGCGGTGGACCATCATGGAC 45 17 1 GCTGGTGGAC 0.792689 -33 TTTTGCGCTCCTCGCGCTGGCGTCGTTTCAAC 46 81 0 CTCGGTGGCG 0.663679 -170 GCAATTCGGAGGCGAGCTGCCCTAACGTTTTG 46 108 0 GGCGGTGCCC 0.733336 -143 GCTTGCGCAAGCTCTGGCGGCCGAGCCTCCTC 46 138 1 GCTCGCGGCC 0.439163 -113 CGACAAGGACGCTGTTTGGGCGATTTTGGACC 46 225 1 GCTGTGGGCG 0.801014 -26 GCTCTCCGTCGCCGTTGTGGAAGTCGCCGACC 47 14 0 GCCGTTGGAA 0.0830296 -287 GGGGTACCGCCCGGATCCGGCCCGCTGGCAGG 47 157 1 CCGGTCGGCC 0.413961 -144 GATACTTGACGCTGTGACGCAGCACCGCATCT 47 262 1 GCTGGCGCAG 0.808662 -39 CTTCCGGGCAGCCGGGCAGGCGGTCCCACAAA 48 16 1 GCCGGAGGCG 0.831281 -56 TGAAGCGGTTGCCGGGTGGGCGAGGTTTGACC 49 92 1 GCCGGGGGCG 0.977842 -209 CCAGGTCGCAGCCGCATCGCCGACTTTCGGGC 49 156 0 GCCGACGCCG 0.671828 -145 TAGTCCAGGGACCGCGCCGGCCAGCAGCGAAA 49 190 1 ACCGGCGGCC 0.431598 -111 CAGACATAGCGAGGAGACGCCC 49 289 1 GAGGGCGCCC 0.514573 -12 **** * ***** Masking position 9 Map Score: 68.4767 Number of sites scoring better than the average of aligned sites = 44057 Number in coding regions = 41587 Number in noncoding regions = 2470 Number of orfs with sites within 600 bp upstream = 1132 Fraction of orfs with sites within 600 bp upstream = 0.181818 Motif number 6 ACCATTGTTGCCTGCGCCGTTGGGCGGGAT 1 20 0 CCTGCGCCGT 0.903062 -128 CGCCAGCTCATCGGAGTCGCCCACCTGCTA 1 61 1 TCGGAGTCGC 0.805333 -87 CGTGGGCGACTCGGAGTCGATGGTGATTCG 4 19 0 TCGGAGTCGA 0.927475 -93 ACGGGGCGACTCGGAGTCGACGTGTTGGAT 4 46 1 TCGGAGTCGA 0.927475 -66 CCTGCGCCGACGACGATGCA 5 1 1 CCTGCGCCGA 0.912757 -227 ATCGCTACGCTCTGCATCGTCGTCGGCGCA 5 13 0 TCTGCATCGT 0.90208 -215 GCGCTGATGACCTGCGCCGACGACGATGCA 5 78 1 CCTGCGCCGA 0.912757 -150 ATCGCTACGCTCTGCATCGTCGTCGGCGCA 5 90 0 TCTGCATCGT 0.90208 -138 GCGCTGATGACCTGCGCCGACGACGATGCA 5 155 1 CCTGCGCCGA 0.912757 -73 ATCGCTACGCTCTGCATCGTCGTCGGCGCA 5 167 0 TCTGCATCGT 0.90208 -61 CCCTACCGTCGGAGCCGCACACCGTCAC 6 39 0 TCGGAGCCGC 0.773461 -18 TGTGCATCGTCTCCCGGCGG 7 1 1 TGTGCATCGT 0.667938 -128 TGCGAATGGCTGGGCACCGTTGTGGTGTCC 15 19 1 TGGGCACCGT 0.815032 -120 GTCTGCATCGTGGCGTACCGG 19 2 1 TCTGCATCGT 0.90208 -88 GGGGATTATCCGGGCGTCGATGCGCCGAGG 30 99 0 CGGGCGTCGA 0.883707 -28 GTGGGCGTCGAGTTCGCGAGC 31 2 1 TGGGCGTCGA 0.938337 -299 CCAACACAGCTCGGCGACGATGCACGCCGC 36 120 0 TCGGCGACGA 0.556287 -83 ATAACCTAGCTCGGCGACGATGCACGCCGC 36 178 0 TCGGCGACGA 0.556287 -25 AACAGTCCGATCGGGATCGTGTGTGGATCC 37 166 1 TCGGGATCGT 0.613294 -71 CCCGATACCTTCGGCGTCGTTTGCGGGCGG 40 19 1 TCGGCGTCGT 0.973472 -77 CCGGCCTTGGTCGGCACCGAAATCGGGGCT 40 58 1 TCGGCACCGA 0.68041 -38 CCGCAGTATGTCGTCATCGAGGTCGATCGT 46 49 0 TCGTCATCGA 0.522268 -202 CGCAAGCAATTCGGAGGCGAGCTGCCCTAA 46 115 0 TCGGAGGCGA 0.670325 -136 ********** Masking position 8 Map Score: 33.2715 Number of sites scoring better than the average of aligned sites = 10484 Number in coding regions = 9923 Number in noncoding regions = 561 Number of orfs with sites within 600 bp upstream = 398 Fraction of orfs with sites within 600 bp upstream = 0.0639255 Motif number 7 ATCGGGTGCAGCGGACGTAGGTCCGGCGCCCGG 1 99 0 GCGGGTGGTC 0.929901 -49 CGACACCACAGAGGATCTCGGGCCGATCCG 7 109 1 GAGGCTGGGC 0.835911 -20 CCGATTTTGTGCGACTCTGTGTCTGCTCGCGGG 9 22 0 GCGACTTGTC 0.617418 -109 CGGTTTTGATGCGACTCTGTGTCTGCTCGCCCA 9 55 1 GCGACTTGTC 0.617418 -76 CGGTGAGAAAGCGGATCTCGGTTTCCGGGTATA 11 31 0 GCGGCTGGTT 0.973176 -151 GGTGACCGGGCGGGATGTCGGGCTTCGGCGGTG 11 59 0 CGGGGTGGGC 0.588865 -123 GAGCATCGTTGCCGGGATAGGTTGATCACC 12 8 0 GCCGATGGTT 0.809067 -142 TCGCCGTTCGGTGGGCCTCGGTCGCTCGCGGGT 12 39 1 GTGGCTGGTC 0.794275 -111 GCATGTCCGTGGCAGGATCGGGCA 19 76 1 GGCAATGGGC 0.536899 -14 GCGGGTCTCGGGCGTCAAATTCC 20 58 0 GCGGCTGGGC 0.991853 -13 TCGATGCGTTGCGGACCTTGGTTCATGGTGGTC 21 37 0 GCGGCTGGTT 0.973176 -39 TTTCCAGGTCGCGGCGCTCCGGCCACTGACAGA 24 17 0 GCGGCTCGGC 0.95573 -69 TGGTAGCGATCGGGACCTGGGTCTCCTATTGCC 27 73 1 CGGGCTGGTC 0.883053 -109 TGCCGTGACGGCGGTGATTGGTTCATCGACCGT 28 22 1 GCGGATGGTT 0.863447 -65 GGCAGATAGCCGGGCAATCGGGCTTGCCCGGTG 30 29 1 CGGGATGGGC 0.634562 -98 GTGATCCAGCGCGAGCCTTCGGCCTCGGCGCAT 30 77 1 GCGACTCGGC 0.771497 -50 AGTCACTGTAGCCGCCGTCGGTCAGCCCCGCAG 35 12 0 GCCGGTGGTC 0.898844 -93 GCTTAGACGGCGGGGGCTCGGGTGGTACCCATC 36 19 1 CGGGCTGGGT 0.796631 -184 TACCCATCGCGCCGCGCTGCGGTGCGGGTCATC 36 44 1 GCCGCTCGGT 0.852054 -159 GTGCATCGTCGCCGAGCTGTGTTGGACTGCTCG 36 125 1 GCCGCTTGTT 0.734712 -78 GTGCATCGTCGCCGAGCTAGGTTATGGGCT 36 183 1 GCCGCTGGTT 0.960494 -20 CGAGCGCAGCGCTAGGCTCGGGCAATGACCTCG 38 11 0 GCTACTGGGC 0.452089 -49 ACCGCGAGGAGCCGCGCTGTGACTGGCGGGACG 39 15 0 GCCGCTTGAC 0.361028 -54 GGGCATCCTAGCCGGCCTTGGTCGGCACCGAAA 40 47 1 GCCGCTGGTC 0.98408 -49 TGCACGGGCGCAATAGGTTCACTTCCCCC 41 7 1 GGCGATGGTT 0.692318 -287 CCGGAACTGCGGCAGTCTAGGGCGAATAGTACA 41 38 1 GGCACTGGGC 0.869308 -256 GCCCCGGGTCGCGGTGCTGGGCTGCAGCCGTGT 41 243 0 GCGGCTGGCT 0.81199 -51 ACCGCGACCCGGGGCAATCGGGCACAGGCCGGA 41 261 1 GGGGATGGGC 0.918488 -33 GTCGCACCAAGGCGAGCCGGGTTTCTGCAGACC 43 22 1 GGCGCCGGTT 0.452656 -143 CAACCGAGATGCGGTGCTGCGTCACAGCGTCAA 47 267 0 GCGGCTCGTC 0.943383 -34 TTGTGAGTGTGGCGGTCTCGGGTGTACGGATGG 49 33 1 GGCGCTGGGT 0.944552 -268 **** ** **** Masking position 11 Map Score: 44.6343 Number of sites scoring better than the average of aligned sites = 5510 Number in coding regions = 5102 Number in noncoding regions = 408 Number of orfs with sites within 600 bp upstream = 336 Fraction of orfs with sites within 600 bp upstream = 0.0539672 Motif number 8 ATCGTGACGCTAGCGCGCTAGC 2 3 1 CGTGACGCTA 0.833629 -127 CGATGCAGAGCGTAGCGATGAGGTGGGGGC 5 24 1 CGTAGCGATG 0.899895 -204 TGCGGGGGAGAGTGGCGCTGATGACCTGCG 5 64 1 AGTGGCGCTG 0.973488 -164 CGATGCAGAGCGTAGCGATGAGGTGGGGGC 5 101 1 CGTAGCGATG 0.899895 -127 TGCGGGGGAGAGTGGCGCTGATGACCTGCG 5 141 1 AGTGGCGCTG 0.973488 -87 CGATGCAGAGCGTAGCGATGAGGTGGGGGC 5 178 1 CGTAGCGATG 0.899895 -50 TGCGGGGGAGAGTGGCGCTG 5 218 1 AGTGGCGCTG 0.973488 -10 GACATGAAACGATGGCGCTGAAAAAGGGGG 12 110 1 GATGGCGCTG 0.793845 -40 TAGTTACGGGGCGCAGCAACCCCCGT 18 7 1 CGGGGCGCAG 0.895519 -32 GGGCTTGCCCGGTGACGCTACACTTAGCCG 30 48 1 GGTGACGCTA 0.495112 -79 CACCGCAGCGCGGCGCGATGGGTACCACCC 36 38 0 CGGCGCGATG 0.71131 -165 TCAAGCACAGCTTGACGATGACCCGCACCG 36 63 0 CTTGACGATG 0.644877 -140 ATTGCCCGAGCCTAGCGCTGCGCTCGCCAA 38 18 1 CCTAGCGCTG 0.868302 -42 GCCGACGTGCCCGGGCGCTGGTCTGCAGAA 43 44 0 CCGGGCGCTG 0.954157 -121 TCTTGACGACAAGGACGCTGTTTGGGCGAT 46 219 1 AAGGACGCTG 0.524834 -32 GGCGTTGGTCCGGGACGCTGCCTCAAGCGT 47 54 1 CGGGACGCTG 0.973667 -247 TGTGCGGATACTTGACGCTGTGACGCAGCA 47 256 1 CTTGACGCTG 0.871821 -45 ********** Masking position 7 Map Score: 17.3925 Number of sites scoring better than the average of aligned sites = 5285 Number in coding regions = 4964 Number in noncoding regions = 321 Number of orfs with sites within 600 bp upstream = 286 Fraction of orfs with sites within 600 bp upstream = 0.0459364 Motif number 9 TCGGGTGCAGCGGACGTAGGTCCGGCGCCCG 1 100 0 CGGAGTAGGT 0.465331 -48 CCCCCGCAAGCGGGTGGTGCCCCCACCTCAT 5 41 0 CGGGGGTGCC 0.964213 -187 CCCCCGCAAGCGGGTGGTGCCCCCACCTCAT 5 118 0 CGGGGGTGCC 0.964213 -110 CCCCCGCAAGCGGGTGGTGCCCCCACCTCAT 5 195 0 CGGGGGTGCC 0.964213 -33 CTCGTCCGCGCGGGTTTCGCCTGCTGACACA 10 124 0 CGGGTTCGCC 0.804165 -177 GCCCCATGGACGGGTTTTGTTTGGTGGTCAA 10 190 0 CGGGTTTGTT 0.834395 -111 GATAGTGTGCCGGGAGTAGCTGGACCTGACT 12 78 1 CGGGGTAGCT 0.974252 -72 GTAGAGGTTACGGGGGTTGCTGCGCCCCGTA 18 15 0 CGGGGTTGCT 0.990288 -24 CGGTCGTTGTACCACAGGACC 22 1 1 CGGTGTTGTA 0.327467 -37 ACAGGGCGGACGGGCGCAGCTGCACCTGCGC 26 26 1 CGGGGCAGCT 0.898279 -95 TGATGGCGTCCGGTCGTTGCTGAAGCAGGTT 26 96 0 CGGTGTTGCT 0.943303 -25 GCCGTGACGGCGGTGATTGGTTCATCGACCG 28 23 1 CGGTATTGGT 0.303924 -64 GGCCGCGCCTCGGGTTTAGCTATGACGCATT 29 34 0 CGGGTTAGCT 0.911602 -52 GGGGATTATCCGGGCGTCGATGCGCCGAGGC 30 98 0 CGGGGTCGAT 0.763116 -29 GCGCACCACACGGGCGTTTCTTGCTTGATTA 33 23 0 CGGGGTTTCT 0.802178 -47 TGTGTGGATCCGGGGTTAGGCTGGCTTTTCT 37 185 1 CGGGTTAGGC 0.738925 -52 TCCTGTGGCTCGGTGGTTGGTTGCCGATCAC 41 201 0 CGGTGTTGGT 0.885277 -93 CCGACGTGCCCGGGCGCTGGTCTGCAGAAAC 43 42 0 CGGGGCTGGT 0.916928 -123 CGACATACTGCGGGCGTTGAAACGACGCCAG 46 66 1 CGGGGTTGAA 0.675603 -185 AGCGTGGCAGCGGGATTTGCTTCAGCAGCCC 47 79 1 CGGGTTTGCT 0.965267 -222 CGTCTGCAGGCGGGTTGTGTTTGTGGGACCG 48 36 0 CGGGTGTGTT 0.692289 -36 **** ****** Masking position 3 Map Score: 23.9543 Number of sites scoring better than the average of aligned sites = 2276 Number in coding regions = 2082 Number in noncoding regions = 194 Number of orfs with sites within 600 bp upstream = 177 Fraction of orfs with sites within 600 bp upstream = 0.0284292 Motif number 10 GACTCCGAGTCGCCCCGTGGGCGACTCGGA 4 34 0 CGCCCCGTGG 0.722608 -78 ATGCGTGAGCCACCTCGTGGGTACCGTC 4 94 1 CACCTCGTGG 0.787623 -18 GTGCCCCCACCTCATCGCTACGCTCTGCAT 5 26 0 CTCATCGCTA 0.591858 -202 GTGCCCCCACCTCATCGCTACGCTCTGCAT 5 103 0 CTCATCGCTA 0.591858 -125 GTGCCCCCACCTCATCGCTACGCTCTGCAT 5 180 0 CTCATCGCTA 0.591858 -48 TGTGCATCGTCTCCCGGCGGCGCGGCG 7 8 1 CGTCTCCCGG 0.604815 -121 GCTATGCCTACGCATCGTGGCCCAATCGTT 7 53 0 CGCATCGTGG 0.836482 -76 GACTCTGTGTCTGCTCGCGGGGTGCGCGCG 9 13 0 CTGCTCGCGG 0.970475 -118 CTCCCGCTTCTCGTTGTTGTCGCACT 17 285 0 CTTCTCGTTG 0.776912 -16 ATGCCGTAGCCTTATCGAGGC 20 2 0 CTTATCGAGG 0.41572 -69 GGATTCTCCTCGTGCTTCGATGCGT 21 61 0 CTCCTCGTGC 0.955887 -15 TAATACGGCACTTCTCGAGGTGAAGACTCC 27 159 1 CTTCTCGAGG 0.799065 -23 CCACGACTGTCGCCTCATGGACAGGAGATG 29 64 1 CGCCTCATGG 0.751406 -22 GATTTTGCGTCTGCTCGCGGGTGGGAGGCA 34 12 0 CTGCTCGCGG 0.970475 -85 GATTTTGCGTCTGCTCGCGCCGCCACCGAC 34 66 1 CTGCTCGCGC 0.93913 -31 GTACCCATCGCGCCGCGCTGCGGTGCGGGT 36 43 1 CGCCGCGCTG 0.695393 -160 TGCTCGGCTCCTCCTCACGCCGCTGCGCGG 36 94 1 CTCCTCACGC 0.878866 -109 TGCTCGGCTCCTCCTCACGCCGCTGCGCGG 36 152 1 CTCCTCACGC 0.878866 -51 CGGCGACAACCGTCTCGCGCGGGCGGCGGC 37 43 0 CGTCTCGCGC 0.920523 -194 CACAGCGCGGCTCCTCGCGGTCGGGCCGCC 39 27 1 CTCCTCGCGG 0.993208 -42 CCTCTAGACTCTTCTCGTTGGCAAACGGTT 44 38 1 CTTCTCGTTG 0.776912 -61 ACGTTTTGCGCTCCTCGCGCTGGCGTCGTT 46 86 0 CTCCTCGCGC 0.985638 -165 GGGCGTCTCCTCGCTATGTCTGGCAA 49 285 0 CTCCTCGCTA 0.89017 -16 ********** Masking position 6 Map Score: 25.4522 Number of sites scoring better than the average of aligned sites = 3525 Number in coding regions = 3156 Number in noncoding regions = 369 Number of orfs with sites within 600 bp upstream = 303 Fraction of orfs with sites within 600 bp upstream = 0.0486669 Motif number 11 CGCCAGCTCATCGGAGTCGCCCACCTGCTA 1 61 1 TCGGAGTCGC 0.840853 -87 GCTATCGCCATCCCGGGCGCCGGACCTACG 1 87 1 TCCCGGGCGC 0.975661 -61 GACACGGGAGTCCCGGGAGCGGGGTCTGAG 2 46 1 TCCCGGGAGC 0.817256 -84 CACCATCGACTCCGAGTCGCCCACGGGGCG 4 24 1 TCCGAGTCGC 0.970965 -88 ACACGTCGACTCCGAGTCGCCCCGTGGGCG 4 41 0 TCCGAGTCGC 0.970965 -71 CCCTACCGTCGGAGCCGCACACCGTCAC 6 39 0 TCGGAGCCGC 0.757638 -18 GTGCATCGTCTCCCGGCGGCGCGGCGAGCC 7 12 1 TCCCGGCGGC 0.810107 -117 AGGGTGAGCCGCCGGGTCGCGTGCTGGGCG 9 82 0 GCCGGGTCGC 0.971869 -49 GACGCTATTGCCCGGGGCGCGACCACGCCC 15 96 0 CCCGGGGCGC 0.926356 -43 GGCGTCAAATTCCGGGTAGATATCGTATAC 20 41 0 TCCGGGTAGA 0.751699 -30 GGGTTGCCTTTCCAGGTCGCGGCGCTCCGG 24 28 0 TCCAGGTCGC 0.975899 -58 GAGACCCAGGTCCCGATCGCTACCATGACT 27 68 0 TCCCGATCGC 0.94121 -114 GGTGATACCCTCCCGGCCGAGGATAGTGAC 32 27 1 TCCCGGCCGA 0.904464 -25 CCACACACGATCCCGATCGGACTGTTCGAC 37 162 0 TCCCGATCGG 0.511579 -75 GCCCGATTGCCCCGGGTCGCGGTGCTGGGC 41 254 0 CCCGGGTCGC 0.971898 -40 GGCGAAGTCATCCAGATCGAAGCCAGCGGC 43 81 0 TCCAGATCGA 0.460678 -84 TATGTCGTCATCGAGGTCGATCGTAGTGCG 46 43 0 TCGAGGTCGA 0.481398 -208 GCAGCTCGCCTCCGAATTGCTTGCGCAAGC 46 120 1 TCCGAATTGC 0.176528 -131 TTGGCGTTGGTCCGGGACGCTGCCTCAAGC 47 52 1 TCCGGGACGC 0.944785 -249 TGCTTCAGCAGCCCGGTCGCCAGCAGCCGC 47 96 1 GCCCGGTCGC 0.953254 -205 ACCGCCCGGATCCGGCCCGCTGGCAGGCTC 47 162 1 TCCGGCCCGC 0.876823 -139 CAATCCTTCCGGGCAGCCGGGCAGGCG 48 8 1 TCCGGGCAGC 0.925013 -64 CCTGGACTAATCCAGGTCGCAGCCGCATCG 49 169 0 TCCAGGTCGC 0.975899 -132 ********** Masking position 2 Map Score: 32.5205 Number of sites scoring better than the average of aligned sites = 4231 Number in coding regions = 3934 Number in noncoding regions = 297 Number of orfs with sites within 600 bp upstream = 258 Fraction of orfs with sites within 600 bp upstream = 0.0414391 Motif number 12 GCGTGTTGCATCCCGCCCAACGGCG 1 5 1 GTTGCTCCCG 0.880598 -143 TGCCGGCGAAGGGAGGTCAAGG 2 118 1 GGGAGTCAAG 0.517454 -12 GTACCCACGAGGTGGCTCACGCATTCAGACT 4 87 0 GGTGGTCACG 0.919341 -25 CATAGCTGAGGTGGCGTCGCGGCCCTCACCG 7 77 1 GTGGCTCGCG 0.867671 -52 CCGACTAGTCGTGGGATACCAGCGGAGTCCA 17 54 0 GTGGGTACCA 0.721401 -247 TAACCGGGTAGGGGGGCACCGCGGGCCGATC 17 146 0 GGGGGCACCG 0.747831 -155 TCACAGCACAGTGGGATAAAGGTTTGCACAC 17 207 0 GTGGGTAAAG 0.694724 -94 GTCTGCATCGTGGCGTACCGGGCGCGGCAC 19 10 1 GTGGCTACCG 0.93764 -80 CATTGTCATCGGGACTTCACGGTGTGC 29 7 0 GGGACTCACG 0.861626 -79 GCTATCTGCCGTGGGATAACGCACGGCG 30 8 0 GTGGGTAACG 0.962995 -119 GAAGGCTCGCGCTGGATCACGGCTAAGTGTA 30 66 0 GCTGGTCACG 0.686645 -61 AATTTTCGCGGTGGCGTTACGCTCGCGAACT 31 21 0 GTGGCTTACG 0.732864 -280 GGATTTCGCAGTGCCGTCACGCTCGCGGATC 31 58 1 GTGCCTCACG 0.758528 -243 ATCCTTCTTTGGGGGCTCACAGGGATCCGAG 35 74 0 GGGGGTCACA 0.842626 -31 CCCTGTATCGGGGAGATCCCGGT 37 3 0 GGGAGTCCCG 0.933121 -234 TGGCTCGGTGGTTGGTTGCCGATCACCCGGT 41 196 0 GTTGGTGCCG 0.629095 -98 CGAGGTCTCAGTGAGATCACGAAATCAGTAC 43 129 0 GTGAGTCACG 0.932121 -36 GCCGACGTGAGTGGGGTACCGCCCGGATCCG 47 145 1 GTGGGTACCG 0.967331 -156 ***** ***** Masking position 1 Map Score: 9.82384 Number of sites scoring better than the average of aligned sites = 1898 Number in coding regions = 1701 Number in noncoding regions = 197 Number of orfs with sites within 600 bp upstream = 183 Fraction of orfs with sites within 600 bp upstream = 0.0293929 Motif number 13 GCGAGCAGACACAGAGTCGCACAAAATCGG 9 25 1 ACAGAGTCGC 0.614667 -106 ACAGAGTCGCACAAAATCGGCGGTTTTGAT 9 35 1 ACAAAATCGG 0.860909 -96 GCGAGCAGACACAGAGTCGCATCAAAACCG 9 55 0 ACAGAGTCGC 0.614667 -76 GTCTGGGCGGGCCATATCGGCCCTAGGGGA 14 21 0 GCCATATCGG 0.799472 -31 GCTACGGCATCCGATATCGGTATACGATAT 20 22 1 CCGATATCGG 0.462719 -49 ACCACAGGACCCAAAATCGGGAGCACG 22 21 1 CCAAAATCGG 0.955414 -17 CGCCGTCACGGCAATGTCGGCCAG 28 5 0 GCAATGTCGG 0.876465 -82 GACCGTGGCGGCAAACTCGCCGACAGAATA 28 49 1 GCAAACTCGC 0.705233 -38 GCGAGCAGACGCAAAATCGCCCATTTTCAT 34 24 1 GCAAAATCGC 0.919332 -73 GCGAGCAGACGCAAAATCGCCCTTTTCGTC 34 54 0 GCAAAATCGC 0.919332 -43 TTGGTCGGCACCGAAATCGGGGCTTGACCA 40 64 1 CCGAAATCGG 0.817879 -32 CTGGGCTGCAGCCGTGTCGGCGTGACTGTC 41 230 0 GCCGTGTCGG 0.650348 -64 CACACGGGGCCGCAAGTCGGCAGTCGACCA 46 187 0 CGCAAGTCGG 0.708927 -64 CCACGGTCCAAAATCGCCCAAACAGCG 46 234 0 CCAAAATCGC 0.929372 -17 CCGAACGTGCCCCAAATCGGGTTTCATAGC 47 191 1 CCCAAATCGG 0.93471 -110 AACAGTCGCCCGAAAGTCGGCGATGCGGCT 49 149 1 CGAAAGTCGG 0.786011 -152 ********** Masking position 7 Map Score: 9.75184 Number of sites scoring better than the average of aligned sites = 1253 Number in coding regions = 1148 Number in noncoding regions = 105 Number of orfs with sites within 600 bp upstream = 91 Fraction of orfs with sites within 600 bp upstream = 0.0146161 Motif number 14 ACATTCGCCACAGATGTACCGATCAC 1 132 0 CGCCACGATG 0.848001 -16 AGGTCATCAGCGCCACTCTCCCCCGCAAGCG 5 60 0 CGCCACCTCC 0.904702 -168 AGGTCATCAGCGCCACTCTCCCCCGCAAGCG 5 137 0 CGCCACCTCC 0.904702 -91 CAGCGCCACTCTCCCCCGCAAGCG 5 214 0 CGCCACCTCC 0.904702 -14 CCCTACCGTCGGAGCCGCACA 6 46 0 CCCTACGTCG 0.322543 -11 TGGATTGAGCGGCAACGGTCCAAGCTGATTT 8 37 1 GGCAACGTCC 0.851541 -105 CCGTTCGGTGGGCCTCGGTCGCTCGCGGGTT 12 42 1 GGCCTCGTCG 0.79533 -108 GCGAATGGCTGGGCACCGTTGTGGTGTCCGG 15 20 1 GGGCACGTTG 0.688488 -119 CATTTCCCCCGGCCACCGACTAGTCGTGGGA 17 69 0 GGCCACGACT 0.436887 -232 GACTCTTGTTGGCCACTGTTGTCGAGGTGCC 17 242 1 GGCCACGTTG 0.950895 -59 ACATGCGAGCCGCCGCTGTTCGCCATGTCCC 19 51 0 CGCCGCGTTC 0.54142 -39 CATACGTTCGGGCGACTGCCCGGGCAGTTTG 23 12 0 GGCGACGCCC 0.802841 -29 GCGGCGCTCCGGCCACTGACAGAAAAGGT 24 9 0 GGCCACGACA 0.577717 -77 GAGAGATGTACGAAACCGTCGTTGTATCAAC 24 58 1 CGAAACGTCG 0.665274 -28 GCGAGTTTGCCGCCACGGTCGATGAACCAAT 28 38 0 CGCCACGTCG 0.989344 -49 CTGTCCATGAGGCGACAGTCGTGGGCCGCGC 29 57 0 GGCGACGTCG 0.977238 -29 GCTGTGTGAAGGCTACCGTCGGACACTATGG 31 118 1 GGCTACGTCG 0.881296 -183 CGAGCACCAACGCGACCCTCGTGCAGCAGCT 31 215 1 CGCGACCTCG 0.916712 -86 CTGCTCGCGCCGCCACCGACAGGGCCGCGCC 34 76 1 CGCCACGACA 0.649998 -21 GCCGCCCGCGCGAGACGGTTGTCGCCGTTGT 37 46 1 CGAGACGTTG 0.692025 -191 ACCCGTGGCAGGAAACAGTTGCAGTGTGTAC 41 66 0 GGAAACGTTG 0.290802 -228 GCCGTGTCGGCGTGACTGTCCTGTGGCTCGG 41 219 0 CGTGACGTCC 0.566506 -75 ACAGTCACGCCGACACGGCTGCAGCCCAGCA 41 231 1 CGACACGCTG 0.38899 -63 TCGCCGCGCCCGTCGCACCAAGGCG 43 5 1 CGCGCCGTCG 0.829217 -160 CCGACTTTCGGGCGACTGTTCGAGGGTACTT 49 138 0 GGCGACGTTC 0.866376 -163 GATTGGCCCGCGGGACAGTCGGAGGTGGTTT 49 220 0 CGGGACGTCG 0.869185 -81 ****** **** Masking position 6 Map Score: 22.9516 Number of sites scoring better than the average of aligned sites = 8121 Number in coding regions = 7608 Number in noncoding regions = 513 Number of orfs with sites within 600 bp upstream = 414 Fraction of orfs with sites within 600 bp upstream = 0.0664953 Motif number 15 CCTTCGCCGGCATGATCCGGATCAGGTGTG 2 100 0 CATGATCCGG 0.641478 -30 AGTCTGAATGCGTGAGCCACCTCGTGGGTA 4 87 1 CGTGAGCCAC 0.826438 -25 GAGGTGGCGTCGCGGCCCTCACCGGCGACA 7 84 1 CGCGGCCCTC 0.837887 -45 CGGATCGGCCCGAGATCCTCTGTGGTGTCG 7 109 0 CGAGATCCTC 0.853548 -20 TCGCCCAGCACGCGACCCGGCGGCTCACCC 9 81 1 CGCGACCCGG 0.948303 -50 CAGTGTGCACCACGTTCCACCAATGTTGGT 10 71 0 CACGTTCCAC 0.321318 -230 TGTCAGCAGGCGAAACCCGCGCGGACGAGA 10 126 1 CGAAACCCGC 0.61831 -175 ACCCGGAAACCGAGATCCGCTTTCTCACCG 11 34 1 CGAGATCCGC 0.974288 -148 CGCGAGCGACCGAGGCCCACCGAACGGCGA 12 39 0 CGAGGCCCAC 0.909353 -111 TGGTGGACTTCACGATCCACCGGATGCGGG 17 106 0 CACGATCCAC 0.758328 -195 ATTTGACGCCCGAGACCCGC 20 61 1 CGAGACCCGC 0.978152 -10 CACCATGAACCAAGGTCCGCAACGCATCGA 21 40 1 CAAGGTCCGC 0.84266 -36 CGTGGTCTGCCCCCGACAGG 26 1 1 CGTGGTCTGC 0.356315 -120 TCCGAGTCCGCTAGGCCCACAACCTGCTTC 26 76 1 CTAGGCCCAC 0.572611 -45 AGGCGACAGTCGTGGGCCGCGCCTCGGGTT 29 49 0 CGTGGGCCGC 0.902413 -37 TACACTTAGCCGTGATCCAGCGCGAGCCTT 30 66 1 CGTGATCCAG 0.739353 -61 CGGTGTCAGTCTTGATCCGCGAGCGTGACG 31 72 0 CTTGATCCGC 0.755941 -229 CGAGCACCAACGCGACCCTCGTGCAGCAGC 31 215 1 CGCGACCCTC 0.886815 -86 TATCGAACAGCTAGAGCCGGGCAATCGAGC 37 107 1 CTAGAGCCGG 0.524156 -130 AGCCCAGCACCGCGACCCGGGGCAATCGGG 41 253 1 CGCGACCCGG 0.948303 -41 AAGCCAGCGGCGCGTGCCGCCGACGTGCCC 43 62 0 CGCGTGCCGC 0.79725 -103 TCCTTGTCGTCAAGATCCACACGGGGCCGC 46 204 0 CAAGATCCAC 0.733881 -47 CACGCTCAACCGAGATGCGGTGCTGCGTCA 47 276 0 CGAGATGCGG 0.422551 -25 ********** Masking position 1 Map Score: 22.1413 Number of sites scoring better than the average of aligned sites = 4965 Number in coding regions = 4551 Number in noncoding regions = 414 Number of orfs with sites within 600 bp upstream = 353 Fraction of orfs with sites within 600 bp upstream = 0.0566977