AlignACE version 2.2 July 7, 1998 alignACE -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -icrp_mtub_opreg_300.orf -g0.656 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.656 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 PE_PGRS 277 PE_PGRS #2 Rv0110 147 hypothetical protein Rv0110 #3 Rv0415 129 hypothetical protein Rv0415 #4 Rv0458 67 hypothetical protein Rv0458 #5 Rv0475 300 hypothetical protein Rv0475 #6 Rv0476 111 hypothetical protein Rv0476 #7 Rv0488 300 hypothetical protein Rv0488 #8 gpm 156 gpm #9 senX3 173 senX3 #10 regX3 227 regX3 #11 tcrA 56 tcrA #12 Rv0617 155 hypothetical protein Rv0617 #13 galT' 128 galT' #14 phoP 141 phoP #15 Rv0903c 130 hypothetical protein Rv0903c #16 accD3 26 accD3 #17 Rv0981 300 hypothetical protein Rv0981 #18 Rv1033c 181 hypothetical protein Rv1033c #19 Rv1034c 67 hypothetical protein Rv1034c #20 Rv1035c 33 hypothetical protein Rv1035c #21 Rv1036c 110 hypothetical protein Rv1036c #22 Rv1037c 26 hypothetical protein Rv1037c #23 Rv1038c 145 hypothetical protein Rv1038c #24 PPE 76 PPE #25 PE 300 PE #26 Rv1234 149 hypothetical protein Rv1234 #27 Rv1343c 44 hypothetical protein Rv1343c #28 ansA 51 ansA #29 frdA 300 frdA #30 Rv1556 67 hypothetical protein Rv1556 #31 mmpL6 138 mmpL6 #32 ilvA 34 ilvA #33 lprJ 300 lprJ #34 Rv1691 38 hypothetical protein Rv1691 #35 Rv1903 89 hypothetical protein Rv1903 #36 Rv2000 70 hypothetical protein Rv2000 #37 fabG3 75 fabG3 #38 Rv2041c 37 hypothetical protein Rv2041c #39 pncA 40 pncA #40 Rv2044c 85 hypothetical protein Rv2044c #41 lipT 48 lipT #42 Rv2250c 120 hypothetical protein Rv2250c #43 Rv2358 181 hypothetical protein Rv2358 #44 ugpA 86 ugpA #45 infB 85 infB #46 Rv2840c 126 hypothetical protein Rv2840c #47 Rv2842c 194 hypothetical protein Rv2842c #48 ilvB 300 ilvB #49 pknK 51 pknK #50 mtrA 69 mtrA #51 tmk 96 tmk #52 sahH 104 sahH #53 Rv3252c 108 hypothetical protein Rv3252c #54 Rv3253c 90 hypothetical protein Rv3253c #55 lpdA 202 lpdA #56 cdd 236 cdd #57 Rv3329 59 hypothetical protein Rv3329 #58 Rv3330 68 hypothetical protein Rv3330 #59 sugI 95 sugI #60 alr 293 alr #61 Rv3424c 162 hypothetical protein Rv3424c #62 rmlB2 22 rmlB2 #63 Rv3675 164 hypothetical protein Rv3675 #64 Rv3676 98 hypothetical protein Rv3676 #65 glpK 49 glpK #66 Rv3697c 250 hypothetical protein Rv3697c #67 Rv3765c 300 hypothetical protein Rv3765c #68 Rv3920c 71 hypothetical protein Rv3920c #69 rpmH 300 rpmH Motif number 1 GCGCCACCTCGACGCGGAGGCACCAGCGGG 1 84 1 GACGCGGAGG 0.67884 -194 CAAGAGCGAGCCCGCCGCGGCCAACCCGCT 1 108 0 CCCGCCGCGG 0.972812 -170 GTGATTGTGACCAGCTGCCGGAGCGGGAAT 1 149 1 CCAGCTGCCG 0.889555 -129 ACGTGCCCCGGAAGCCGCGCTACATTTGGC 1 214 1 GAAGCCGCGC 0.870968 -64 GCGTGTTGCATCCCGCCCAACGGCGCAG 2 9 1 CATCCCGCCC 0.903872 -139 CCCGCCCAACGGCGCAGGCAACAATGGTGC 2 22 1 GGCGCAGGCA 0.728039 -126 AGCGGACGTAGGTCCGGCGCCCGGGATGGC 2 93 0 GGTCCGGCGC 0.514454 -55 CACATCGGGTGCAGCGGACGTAGGTCCGGC 2 105 0 GCAGCGGACG 0.802794 -43 CTCAGACCCCGCTCCCGGGACTCCCGTGTC 3 46 0 GCTCCCGGGA 0.576078 -84 GAGAGTGGGCGCGCCTGCCCTTACCGTCAC 3 73 1 GCGCCTGCCC 0.832657 -57 TGATCCGGATCATGCCGGCGAAGGGAGGTC 3 106 1 CATGCCGGCG 0.912502 -24 AAGCCATTGTGGCCCCGGCGGTAGTGTGAG 4 13 1 GGCCCCGGCG 0.946482 -55 TCGGCTGGATCAGCCTGCGGTCGACCTCAC 5 21 0 CAGCCTGCGG 0.568148 -280 GCCGATCGGCCGCGCTGGCCAACAGCGACT 5 46 1 CGCGCTGGCC 0.970039 -255 CGGATCAGCTGGGCCTGACATCTACGAACT 5 113 1 GGGCCTGACA 0.515982 -188 GACCGACAACCGACCCGACGATCAGAAGGT 5 144 1 CGACCCGACG 0.931735 -157 TGGCACGCGACTTGCCGGGGAAACCTTCTG 5 166 0 CTTGCCGGGG 0.850181 -135 CCTCCCTGGAGGAGCCGACGCTTGCCCCAA 5 221 1 GGAGCCGACG 0.952754 -80 CTTGCCCCAACGTCCAGACCAAAGATGTAA 5 241 1 CGTCCAGACC 0.692694 -60 TCCTTCTCATCGCGCTGCGC 7 1 0 CGCGCTGCGC 0.960046 -300 CGGTTAGGTCGAGCCCGACGACGATGCAGA 7 37 1 GAGCCCGACG 0.75399 -264 TCCTTCTCATCGCGCTGCGCGCTCTGCATC 7 59 0 CGCGCTGCGC 0.960046 -242 CGGTTAGGTCGAGCCCGACGACGATGCAGA 7 95 1 GAGCCCGACG 0.75399 -206 TATTTCTCATCGCGCTGCGCGCTCTGCATC 7 117 0 CGCGCTGCGC 0.960046 -184 CAGCCCATCACCGGCGGGCGTCTTGACCTC 7 156 0 CCGGCGGGCG 0.908827 -145 GGGGTGAGCGCCACCAGCCCATCACCGGCG 7 170 0 CCACCAGCCC 0.709276 -131 GGCAACGAAGCCGACAAACACCTGAA 7 285 0 GAAGCCGACA 0.558218 -16 CGGCCTTGGTGAACCGGCCGTTACGGTGCC 8 35 1 GAACCGGCCG 0.685094 -122 CGGCCGTTACGGTGCCGACCACCTCGGCGG 8 49 1 GGTGCCGACC 0.964487 -108 GCGGTATGAACGCGCTGCGCAGCGGACCGA 8 75 1 CGCGCTGCGC 0.960046 -82 TGAGATCCCACCTGCCGGCGGTTTCGGCGG 9 16 1 CCTGCCGGCG 0.959017 -158 CGATTTTGGCCTTGCCGCGCTAGGGCGACG 9 128 1 CTTGCCGCGC 0.909346 -46 GCACCACCCGCTTGCGGGGGAGAGTGGCGC 10 52 1 CTTGCGGGGG 0.701369 -176 GCACCACCCGCTTGCGGGGGAGAGTGGCGC 10 129 1 CTTGCGGGGG 0.701369 -99 GCACCACCCGCTTGCGGGGGAGAGTGGCGC 10 206 1 CTTGCGGGGG 0.701369 -22 GAGTGAAACGGTCGCCGACCTCATGCGACG 12 19 1 GTCGCCGACC 0.926649 -137 GCGACGAGGCCTGGCCGCCAACCGCCCTAC 12 43 1 CTGGCCGCCA 0.848809 -113 AGGTCACGACGGTCCCGACGCTCACCAAAG 12 105 0 GGTCCCGACG 0.909321 -51 GGCGGCTCGCCGCGCCGCCGGGAGACGATG 13 15 0 CGCGCCGCCG 0.992888 -114 GGCGGCGCGGCGAGCCGCCCCAAAACCAAC 13 26 1 CGAGCCGCCC 0.987446 -103 CTGAGGTGGCGTCGCGGCCCTCACCGGCGA 13 82 1 GTCGCGGCCC 0.924767 -47 CGGATCGGCCCGAGATCCTCTGTGG 13 114 0 CGGCCCGAGA 0.73886 -15 CCCGCGCGCACCCCGCGAGCAGACACAG 15 9 1 CACCCCGCGA 0.701039 -122 CGCCGGGTCGCGTGCTGGGCGAGCAGACAC 15 73 0 CGTGCTGGGC 0.891764 -58 GCCCAGCACGCGACCCGGCGGCTCACCCTC 15 83 1 CGACCCGGCG 0.957712 -48 TTTGTGCCTGCGCCCAGGCGTGGAACGGCA 17 37 0 CGCCCAGGCG 0.842883 -264 GGTGCACACTGCACCTGGGGTTCTGCCCTC 17 90 1 GCACCTGGGG 0.534093 -211 GCGGGTTTCGCCTGCTGACACACGATGAGG 17 116 0 CCTGCTGACA 0.515653 -185 AGGCGAAACCCGCGCGGACGAGAACTCTTC 17 133 1 CGCGCGGACG 0.949917 -168 GCCAGTCTCAGGCGCTGCGACGACACTG 17 283 1 GGCGCTGCGA 0.806845 -18 CCGGTCCACCGGGGGCTCCGTATAC 18 6 1 CCACCGGGGG 0.691939 -176 CGAAGCCCGACATCCCGCCCGGTCACCTTT 18 65 1 CATCCCGCCC 0.903872 -117 TCGTTGTCGACGACCTGGGCCTTGTGCTCA 19 23 0 CGACCTGGGC 0.795804 -45 CGACCCGTCCAGCGCAATGCGGCAA 20 19 0 CGTCCAGCGC 0.73629 -15 TGTAATTGACGGCGCGGGCCTTAAGCCAGC 21 12 0 GGCGCGGGCC 0.953385 -99 CCCGGCCCGACGACTCAGGAGG 22 3 1 CGGCCCGACG 0.933982 -24 ACCTGTCCGCCACGCGGCCACCACCGCGCC 23 69 1 CACGCGGCCA 0.78399 -77 GCGGCAGACGTACGGGCGGC 24 1 1 GCGGCAGACG 0.627018 -76 TTGGTTGAGCGTGGCCGCCCGTACGTCTGC 24 14 0 GTGGCCGCCC 0.948251 -63 CGGCTCTTTCGCACCTGGCG 25 1 0 GCACCTGGCG 0.686179 -300 CTAGAATCCGCGCGCCGCGCGTCTCATTTG 25 39 1 CGCGCCGCGC 0.9892 -262 GTGTGATCTGGTGCCCGGGCTAGCACACTT 25 76 0 GTGCCCGGGC 0.775905 -225 CAAGGTCTTGGCGGCTGACATGGCGGTGTG 25 101 0 GCGGCTGACA 0.504824 -200 CCTTGTTAAGGATGCTGACGTAAACGTTAA 25 126 1 GATGCTGACG 0.553459 -175 CGCCAATCCACAGGCAGCCGTACGCAAACA 25 224 1 CAGGCAGCCG 0.700495 -77 GCTAGCACCCCGGGCCGACCCTGTGTGTTT 25 249 0 CGGGCCGACC 0.978642 -52 GTGTGTGAAACCTGCCGGCCGCTAGCACCC 25 269 0 CCTGCCGGCC 0.966923 -32 GGCGAGCATCGTTGCCGGGATAGGTTGATC 26 14 0 GTTGCCGGGA 0.551997 -136 ACTATCCACTCAACCCGCGAGCGACCGAGG 26 54 0 CAACCCGCGA 0.513377 -96 CTGAAAAAGGGGGGCGGAGGAGAATGAGAA 26 127 1 GGGGCGGAGG 0.848579 -23 CGCGCCCGGGCGCCCAATAGAG 27 3 1 CGCCCGGGCG 0.498956 -42 CCGCCCAGACCCCGCGGCCGG 28 41 1 CCCGCGGCCG 0.958346 -11 CGCCTCCTCCGGTGCTGGCACGTGACCTAG 29 33 0 GGTGCTGGCA 0.732045 -268 AAGCAAAAAGCGCCCTGCGGGCACATGGTT 29 95 1 CGCCCTGCGG 0.900989 -206 AAGTTTTCCTGCGGCTGCCGCGAAATCCGG 29 179 1 GCGGCTGCCG 0.892651 -122 GGCGGCCAAAGCGCCCGGCCAGCGACT 30 8 0 GCGCCCGGCC 0.919245 -60 CGTACCGTACCGTGCCGGCGGCCAAAGCGC 30 24 0 CGTGCCGGCG 0.979567 -44 GTACGGTACGGGACCGGACACCACAACGGT 31 34 0 GGACCGGACA 0.550991 -105 CCGCGGATCCCCGCCTGAGGTACGGGGCGT 31 72 1 CCGCCTGAGG 0.554308 -67 GGCGTGGTCGCGCCCCGGGCAATAGCGTCG 31 97 1 CGCCCCGGGC 0.962106 -42 TCAATGGTGCCACGCCGCCCTATCCCAATG 32 12 0 CACGCCGCCC 0.974359 -23 CGACTAGTCGGTGGCCGGGGGAAATGCCGA 33 74 1 GTGGCCGGGG 0.844577 -227 GGGGGACGATCGGCCCGCGGTGCCCCCCTA 33 139 1 CGGCCCGCGG 0.948761 -162 GGTTACGGGGGTTGCTGCGCCCCGTAACTA 34 11 0 GTTGCTGCGC 0.664571 -28 CCGGACTCGCGGTGCCGCGCCCGGTACGCC 35 22 0 GGTGCCGCGC 0.970999 -68 CACGGACATGCGAGCCGCCGCTGTTCGCCA 35 57 0 CGAGCCGCCG 0.984366 -33 ACCGCCGATTCGTCCAGACGG 37 2 0 CGTCCAGACG 0.642869 -74 GCTTCGATGCGTTGCGGACCTTGGTTCATG 37 43 0 GTTGCGGACC 0.717235 -33 GCAAACTGCCCGGGCAGTCGCCCGA 39 6 1 CTGCCCGGGC 0.821332 -35 GCCTTTCCAGGTCGCGGCGCTCCGGCCACT 40 23 0 GTCGCGGCGC 0.865685 -63 ACAGGCTAGCCGCCCCGCCCCCATTCCTGC 41 15 1 CGCCCCGCCC 0.97799 -34 CGCCCTGTCGGGGGCAGACCACG 42 4 0 GGGGCAGACC 0.811493 -117 CCGCGCAGGTGCAGCTGCGCCCGTCCGCCC 42 29 0 GCAGCTGCGC 0.798897 -92 GCCCGAACTCGACCCCGCGCAGGTGCAGCT 42 43 0 GACCCCGCGC 0.884429 -78 TAGCGGACTCGGAGCAGCCCGAACTCGACC 42 59 0 GGAGCAGCCC 0.880741 -62 GCTTCAGCAACGACCGGACGCCATCAGAAA 42 101 1 CGACCGGACG 0.818467 -20 TTCGAGGGATCGGGCAGACGCGCGCAGCCC 43 15 1 CGGGCAGACG 0.820634 -167 CGGGCAGACGCGCGCAGCCCGACACGACTA 43 25 1 CGCGCAGCCC 0.956116 -157 GTATTAGGAAGGACCTGCCACTGACCTCCA 43 135 0 GGACCTGCCA 0.646495 -47 CTGGCCGACATTGCCGTGAC 44 1 1 CTGGCCGACA 0.70478 -86 TGGCGGCAAACTCGCCGACAGAATACGGAG 44 54 1 CTCGCCGACA 0.794685 -33 CTAAACCCGAGGCGCGGCCCACGACTGTCG 45 46 1 GGCGCGGCCC 0.968511 -40 CCGGATAATCCCCGCGGACCG 46 116 1 CCCGCGGACC 0.933212 -11 CCGGCACGCAGCAGCCGGCGTAGCTACCAA 47 105 0 GCAGCCGGCG 0.942358 -90 CCGGCTGCTGCGTGCCGGCGGGACACTGGG 47 117 1 CGTGCCGGCG 0.979567 -78 CGGGACACTGGGAGCCGCCCTGGCGGCGCC 47 135 1 GGAGCCGCCC 0.9834 -60 ATCTAGCGGAGGCGCCGCCAGGGCGGCTCC 47 145 0 GGCGCCGCCA 0.96814 -50 TTACTACGAGCATCCCGGGCTTTCCGGCCT 48 152 0 CATCCCGGGC 0.776967 -149 CAGGCACCAACGCGCCGACCAATTACTACG 48 174 0 CGCGCCGACC 0.986717 -127 CCCTCGTGCAGCAGCTGAGCTGGCGAGGGT 48 230 1 GCAGCTGAGC 0.628151 -71 GTGGTGATACCCTCCCGGCCGAGGATAGTG 49 25 1 CCTCCCGGCC 0.931817 -27 CTCCCACCCGCGAGCAGACGCAAAATCGCC 51 15 1 CGAGCAGACG 0.76946 -82 TGCGTCTGCTCGCGCCGCCACCGACAGGGC 51 71 1 CGCGCCGCCA 0.975813 -26 GGCGCGGCCCTGTCGGTGGC 51 87 0 GGCGCGGCCC 0.968511 -10 CCTGCGGGGCTGACCGACGGCGGCT 52 6 1 GGGGCTGACC 0.900546 -99 TGCAGTCACTGTAGCCGCCGTCGGTCAGCC 52 18 0 GTAGCCGCCG 0.914527 -87 TACCACCCGAGCCCCCGCCGTCTAAGCTTT 55 16 0 GCCCCCGCCG 0.954002 -187 TGGTACCCATCGCGCCGCGCTGCGGTGCGG 55 41 1 CGCGCCGCGC 0.9892 -162 GGCGTGAGGAGGAGCCGAGCAGTCAAGCAC 55 85 0 GGAGCCGAGC 0.929606 -118 GGCGACGATGCACGCCGCGCAGCGGCGTGA 55 108 0 CACGCCGCGC 0.952198 -95 GGCGTGCATCGTCGCCGAGCTGTGTTGGAC 55 122 1 GTCGCCGAGC 0.868807 -81 GGCGTGAGGAGGAGCCGAGCAGTCCAACAC 55 143 0 GGAGCCGAGC 0.929606 -60 GGCGACGATGCACGCCGCGCAGCGGCGTGA 55 166 0 CACGCCGCGC 0.952198 -37 GGCGTGCATCGTCGCCGAGCTAGGTTATGG 55 180 1 GTCGCCGAGC 0.868807 -23 GTCCGAGGTGGCCGCCGCCCGCGCGAGACG 56 33 1 GCCGCCGCCC 0.984662 -204 ACACCGCGGGCAACCTGGCCAAGTTAAGCT 56 134 0 CAACCTGGCC 0.617766 -103 CTTTCGTCCCGCCAGTCACAGCGC 58 5 1 CGTCCCGCCA 0.908944 -64 CCGACCGCGAGGAGCCGCGCTGTGACTGGC 58 21 0 GGAGCCGCGC 0.968804 -48 TCCTCGCGGTCGGGCCGCCGATCACCTACT 58 38 1 CGGGCCGCCG 0.988523 -31 GCGTCGTTTGCGGGCGGGCATCCTAGCCGG 59 32 1 CGGGCGGGCA 0.879143 -64 GGCGGGCATCCTAGCCGGCCTTGGTCGGCA 59 44 1 CTAGCCGGCC 0.92615 -52 CCCCGATTTCGGTGCCGACCAAGGCCGGCT 59 56 0 GGTGCCGACC 0.964487 -40 GACTGCCGCAGTTCCGGGGGAAGTGAACCT 60 25 0 GTTCCGGGGG 0.468177 -269 CCCGTCAATTCATGCCGGCCGATCCGCACT 60 121 1 CATGCCGGCC 0.928713 -173 ACAGGACAGTCACGCCGACACGGCTGCAGC 60 226 1 CACGCCGACA 0.788531 -68 CCCGGGTCGCGGTGCTGGGCTGCAGCCGTG 60 244 0 GGTGCTGGGC 0.861219 -50 CCCAGCACCGCGACCCGGGGCAATCGGGCA 60 255 1 CGACCCGGGG 0.922431 -39 TGGGCCTCGGCGAGCCGACACGCCTCGGCG 61 118 1 CGAGCCGACA 0.885299 -45 GCCCACCATACCGGCGGCCC 62 1 0 CCGGCGGCCC 0.948209 -22 TGGTGCGACGGGCGCGGCGA 63 1 0 GGCGCGGCGA 0.868283 -164 CTGCAGACCAGCGCCCGGGCACGTCGGCGG 63 46 1 GCGCCCGGGC 0.874997 -119 GCCAGCGGCGCGTGCCGCCGACGTGCCCGG 63 60 0 CGTGCCGCCG 0.985475 -105 CGGCGTCGGACCCGCCGCTGCGGTGGA 65 8 1 GGACCCGCCG 0.960234 -42 TTGCGCTCCTCGCGCTGGCGTCGTTTCAAC 66 81 0 CGCGCTGGCG 0.962848 -170 AATTCGGAGGCGAGCTGCCCTAACGTTTTG 66 108 0 CGAGCTGCCC 0.95376 -143 GCAAGCTCTGGCGGCCGAGCCTCCTCCAAA 66 144 1 GCGGCCGAGC 0.898279 -107 AGTCGGCAGTCGACCAGCGGATGTCAACGT 66 173 0 CGACCAGCGG 0.677287 -78 CGACTGCCGACTTGCGGCCCCGTGTGGATC 66 191 1 CTTGCGGCCC 0.887882 -60 CGTTGTGGAAGTCGCCGACCCGG 67 4 0 GTCGCCGACC 0.926649 -297 TTGAGGCAGCGTCCCGGACCAACGCCAATT 67 50 0 GTCCCGGACC 0.715504 -251 TGAAGCAAATCCCGCTGCCACGCTTGAGGC 67 73 0 CCCGCTGCCA 0.837683 -228 ACCAGTAGCGGCTGCTGGCGACCGGGCTGC 67 103 0 GCTGCTGGCG 0.822146 -198 TACCAACATGCGCGCCGACGTGAGTGGGGT 67 132 1 CGCGCCGACG 0.983461 -169 CAGCGGGCCGGATCCGGGCGGTACCCCACT 67 154 0 GATCCGGGCG 0.607657 -147 TCGGAGCCTGCCAGCGGGCCGGATCCGGGC 67 165 0 CCAGCGGGCC 0.918149 -136 GACCGCCTGCCCGGCTGCCCGGAAGGATTG 68 11 0 CCGGCTGCCC 0.932394 -61 ACACAACCCGCCTGCAGACGAGGGGAGAGC 68 47 1 CCTGCAGACG 0.6371 -25 CGCTTCAGGGCATCCTGCCCGCTAAGCTGC 69 69 0 CATCCTGCCC 0.711479 -232 CAAACCTCGCCCACCCGGCAACCGCTTCAG 69 91 0 CCACCCGGCA 0.761445 -210 ACTAATCCAGGTCGCAGCCGCATCGCCGAC 69 164 0 GTCGCAGCCG 0.747771 -137 GTCCAGGGACCGCGCCGGCCAGCAGCGAAA 69 192 1 CGCGCCGGCC 0.99195 -109 CTCCGACTGTCCCGCGGGCCAATCGAGTTG 69 227 1 CCCGCGGGCC 0.952404 -74 GCAACATCACCATCCGGCCACTCACTGCCT 69 259 0 CATCCGGCCA 0.473169 -42 ********** Masking position 7 Map Score: 234.672 Number of sites scoring better than the average of aligned sites = 90446 Number in coding regions = 84820 Number in noncoding regions = 5626 Number of orfs with sites within 600 bp upstream = 1590 Fraction of orfs with sites within 600 bp upstream = 0.255381 Motif number 2 GCCTCCGCGTCGAGGTGGCGCACCACGCAG 1 75 0 CGAGGTGGCG 0.960037 -203 GCCACCTCGACGCGGAGGCACCAGCGGGTT 1 86 1 CGCGGAGGCA 0.887301 -192 AGAGCGAGCCCGCCGCGGCCAACCCGCTGG 1 106 0 CGCCGCGGCC 0.778367 -172 TTGTTGCCTGCGCCGTTGGGCGGGATGCAA 2 16 0 CGCCGTTGGG 0.892528 -132 CTCACACTACCGCCGGGGCCACAATGGCTT 4 13 0 CGCCGGGGCC 0.755008 -55 GCGACTCCGTCGATGACGTGCAGCAAAGGA 5 70 1 CGATGACGTG 0.676695 -231 GATGTAAGAACGCCGATATCAGAAAATAGT 5 264 1 CGCCGATATC 0.466983 -37 GACTCGGAGTCGACGTGTTGGATGCAAACC 6 53 1 CGACGTGTTG 0.65017 -59 TCGAGCCCGACGACGATGCAGAGCGCGCAG 7 45 1 CGACGATGCA 0.777895 -256 TCGAGCCCGACGACGATGCAGAGCGCGCAG 7 103 1 CGACGATGCA 0.777895 -198 AAATAGCACTCGTGGAGGTCAAGACGCCCG 7 142 1 CGTGGAGGTC 0.640361 -159 GCGTTCATACCGCCGAGGTGGTCGGCACCG 8 58 0 CGCCGAGGTG 0.942015 -99 CCTGCGCCGACGACGATGCAGAGCGTAGCG 10 11 1 CGACGATGCA 0.777895 -217 CAGAGCGTAGCGATGAGGTGGGGGCACCAC 10 29 1 CGATGAGGTG 0.847205 -199 CCTGCGCCGACGACGATGCAGAGCGTAGCG 10 88 1 CGACGATGCA 0.777895 -140 CAGAGCGTAGCGATGAGGTGGGGGCACCAC 10 106 1 CGATGAGGTG 0.847205 -122 CCTGCGCCGACGACGATGCAGAGCGTAGCG 10 165 1 CGACGATGCA 0.777895 -63 CAGAGCGTAGCGATGAGGTGGGGGCACCAC 10 183 1 CGATGAGGTG 0.847205 -45 CTGTCTACCTCGCTGTGACGGTGTGCGGCT 11 25 1 CGCTGTGACG 0.851864 -32 CGACCTCATGCGACGAGGCCTGGCCGCCAA 12 34 1 CGACGAGGCC 0.952425 -122 GCGTCGGGACCGTCGTGACCTCCGAGGACG 12 114 1 CGTCGTGACC 0.653965 -42 TCGTGACCTCCGAGGACGTGCGTTCATTAG 12 126 1 CGAGGACGTG 0.772196 -30 CGGCTCGCCGCGCCGCCGGGAGACGATGCA 13 13 0 CGCCGCCGGG 0.787203 -116 GCTGAGGTGGCGTCGCGGCCCTCACCGGCG 13 81 1 CGTCGCGGCC 0.899166 -48 CGATTTTGTGCGACTCTGTGTCTGCTCGCG 15 24 0 CGACTCTGTG 0.564086 -107 TCAAAACCGCCGATTTTGTGCGACTCTGTG 15 34 0 CGATTTTGTG 0.257596 -97 GGTTTTGATGCGACTCTGTGTCTGCTCGCC 15 56 1 CGACTCTGTG 0.564086 -75 GCCCAGCACGCGACCCGGCGGCTCACCCTC 15 83 1 CGACCCGGCG 0.603004 -48 TTTGTGCCTGCGCCCAGGCGTGGAACGGCA 17 37 0 CGCCCAGGCG 0.592169 -264 CTGAGAGGCGCGCCGTGGTATGCGGGTTTG 17 253 0 CGCCGTGGTA 0.923067 -48 CAGTCTCAGGCGCTGCGACGACACTG 17 285 1 CGCTGCGACG 0.740586 -16 TCGTCGACAACGATGACGGGATTGTGCTGG 19 40 1 CGATGACGGG 0.381232 -28 TCAATTACAACGTGGCCGCACACCGGTTGG 21 33 1 CGTGGCCGCA 0.490568 -78 CTGTGATCGGCGCGGTGGTGGCCGCGTGGC 23 77 0 CGCGGTGGTG 0.967568 -69 GTTGGTTGAGCGTGGCCGCCCGTACGTCTG 24 15 0 CGTGGCCGCC 0.683321 -62 CCCACGACGTTACCGCGCACTGCT 27 31 0 CGACGTTACC 0.560321 -14 TCGTCGCGCTCGATGTGGTGATCGCCGTCA 29 124 0 CGATGTGGTG 0.883144 -177 GCAAGGCCTTCGTCGTCGCGCTCGATGTGG 29 136 0 CGTCGTCGCG 0.924678 -165 CGCATGGATCCGTCGTGGTAGAAATGCCGG 29 205 0 CGTCGTGGTA 0.729549 -96 AACACCTTGCCGTCGTGTCGAATCGTGCGT 29 238 0 CGTCGTGTCG 0.714372 -63 GCTTCGTGATCGCCGCTGTGCTCGTCCTTC 29 268 0 CGCCGCTGTG 0.961498 -33 GCTGGCCGGGCGCTTTGGCCGCCGGCACGG 30 15 1 CGCTTTGGCC 0.682595 -53 AGAACCGTTGTGGTGGTACAGGTCC 30 53 0 CGTTGTGGTG 0.806884 -15 GGCTGGGCACCGTTGTGGTGTCCGGTCCCG 31 26 1 CGTTGTGGTG 0.806884 -113 AGGTACGGGGCGTGGTCGCGCCCCGGGCAA 31 89 1 CGTGGTCGCG 0.863489 -50 TGGTATCCCACGACTAGTCGGTGGCCGGGG 33 64 1 CGACTAGTCG 0.259143 -237 TCCCGCTTCTCGTTGTTGTCGCACTTGCGT 33 280 0 CGTTGTTGTC 0.357989 -21 GTCGGCATACCGCCGATTCGTCCAGACGG 37 10 0 CGCCGATTCG 0.743204 -66 CCTCGTGCTTCGATGCGTTGCGGACCTTGG 37 49 0 CGATGCGTTG 0.294781 -27 GTGGCCGGAGCGCCGCGACCTGGAAAGGCA 40 24 1 CGCCGCGACC 0.823501 -62 TGTACGAAACCGTCGTTGTATCAACGGTGG 40 64 1 CGTCGTTGTA 0.501392 -22 TCGGGCTGCGCGCGTCTGCCCGATCCCTCG 43 17 0 CGCGTCTGCC 0.543433 -165 CAGCCCGACACGACTACGCGCAAAACATCA 43 39 1 CGACTACGCG 0.576884 -143 AACCAATCACCGCCGTCACGGCAATGTCGG 44 15 0 CGCCGTCACG 0.86499 -72 GTTCATCGACCGTGGCGGCAAACTCGCCGA 44 42 1 CGTGGCGGCA 0.709678 -45 GGCGTCGATGCGCCGAGGCCGAAGGCTCGC 46 87 0 CGCCGAGGCC 0.940946 -40 ATCAGAAAGACGCCGCTACGAAGGCAGGCG 47 25 1 CGCCGCTACG 0.789975 -170 TCACGAATGACGCCGTGATCACGCCGTTCA 47 61 0 CGCCGTGATC 0.762083 -134 CACTGGGAGCCGCCCTGGCGGCGCCTCCGC 47 140 1 CGCCCTGGCG 0.895795 -55 GTGGGCGTCGAGTTCGCGAGCGTAACGC 48 9 1 CGAGTTCGCG 0.597396 -292 TGCGAATTTTCGCGGTGGCGTTACGCTCGC 48 26 0 CGCGGTGGCG 0.861752 -275 CAGTCAAATCCGCGGTGTCAGTCTTGATCC 48 84 0 CGCGGTGTCA 0.430983 -217 AATTGGTCGGCGCGTTGGTGCCTGACTAGC 48 180 1 CGCGTTGGTG 0.787626 -121 GCACGAGGGTCGCGTTGGTGCTCGCTTGGG 48 209 0 CGCGTTGGTG 0.787626 -92 AGTTTTGTCCCGATGTGGTGACACC 50 55 1 CGATGTGGTG 0.883144 -15 TGAAAATGGGCGATTTTGCGTCTGCTCGCG 51 23 0 CGATTTTGCG 0.476615 -74 ACGAAAAGGGCGATTTTGCGTCTGCTCGCG 51 55 1 CGATTTTGCG 0.476615 -42 CGTCTGCTCGCGCCGCCACCGACAGGGCCG 51 73 1 CGCCGCCACC 0.721525 -24 CATCGCGCCGCGCTGCGGTGCGGGTCATCG 55 48 1 CGCTGCGGTG 0.943164 -155 CTCCTCCTCACGCCGCTGCGCGGCGTGCAT 55 101 1 CGCCGCTGCG 0.708145 -102 CACAGCTCGGCGACGATGCACGCCGCGCAG 55 116 0 CGACGATGCA 0.777895 -87 CTCCTCCTCACGCCGCTGCGCGGCGTGCAT 55 159 1 CGCCGCTGCG 0.708145 -44 CCTAGCTCGGCGACGATGCACGCCGCGCAG 55 174 0 CGACGATGCA 0.777895 -29 ATACAGGGTCCGAGGTGGCCGCCGCCCGCG 56 26 1 CGAGGTGGCC 0.920111 -211 AGACGGTTGTCGCCGTTGTATTCACCGCTG 56 58 1 CGCCGTTGTA 0.817278 -179 CCAGGTTGCCCGCGGTGTCGAACAGTCCGA 56 146 1 CGCGGTGTCG 0.777044 -91 CAACCCCGCTCGTCGATGGGCCGACTAAGA 56 213 0 CGTCGATGGG 0.578041 -24 TTCGTGTCGTCGTGTTGGCGAGCGCAGCGC 57 32 0 CGTGTTGGCG 0.675921 -28 CGCGGCTCCTCGCGGTCGGGCCGCCGATCA 58 32 1 CGCGGTCGGG 0.770018 -37 AGGACAGTCACGCCGACACGGCTGCAGCCC 60 228 1 CGCCGACACG 0.539915 -66 CGTGTCGGCTCGCCGAGGCCCAAAACAGCA 61 110 0 CGCCGAGGCC 0.940946 -53 TAGCTGAGAACGCCGAGGCGTGTCGGCTCG 61 128 0 CGCCGAGGCG 0.509057 -35 AAACCCGGCTCGCCTTGGTGCGACGGGCGC 63 16 0 CGCCTTGGTG 0.902459 -149 CGGCGCGTGCCGCCGACGTGCCCGGGCGCT 63 55 0 CGCCGACGTG 0.938058 -110 CGGCGGCACGCGCCGCTGGCTTCGATCTGG 63 70 1 CGCCGCTGGC 0.73141 -95 TGGATGACTTCGCCGCTGTCACCTACGACA 63 97 1 CGCCGCTGTC 0.902448 -68 GCGTCGGACCCGCCGCTGCGGTGGACCATC 65 13 1 CGCCGCTGCG 0.708145 -37 TTGCGCTCCTCGCGCTGGCGTCGTTTCAAC 66 81 0 CGCGCTGGCG 0.80614 -170 CGCTCTCCGTCGCCGTTGTGGAAGTCGCCG 67 17 0 CGCCGTTGTG 0.965766 -284 AAGCAAATCCCGCTGCCACGCTTGAGGCAG 67 71 0 CGCTGCCACG 0.629084 -230 CCAACATGCGCGCCGACGTGAGTGGGGTAC 67 134 1 CGCCGACGTG 0.938058 -167 GGATACTTGACGCTGTGACGCAGCACCGCA 67 261 1 CGCTGTGACG 0.851864 -40 GTTTTGCGTTGTGGTGGGTTCTTTGT 69 7 1 CGTTGTGGTG 0.806884 -294 GGTACTTACGCGCCTTCGCCTGGTCAAACC 69 115 0 CGCCTTCGCC 0.767537 -186 CCAGACATAGCGAGGAGACGCCC 69 288 1 CGAGGAGACG 0.669708 -13 ********** Masking position 2 Map Score: 106.696 Number of sites scoring better than the average of aligned sites = 52812 Number in coding regions = 49530 Number in noncoding regions = 3282 Number of orfs with sites within 600 bp upstream = 1231 Fraction of orfs with sites within 600 bp upstream = 0.197719 Motif number 3 GCGTCGAGGTGGCGCACCACGCAGAGTGTT 1 69 0 GGCGCACCAC 0.506155 -209 GCCCGCCGCGGCCAACCCGCTGGTGCCTCC 1 99 0 GCCAACCCGC 0.794905 -179 CACAATCACTGGCGACCACCCAAGAGCGAG 1 128 0 GGCGACCACC 0.942209 -150 TGCCCCGGAAGCCGCGCTACATTTGGCTCC 1 217 1 GCCGCGCTAC 0.692513 -61 GTTGCATCCCGCCCAACGGCGCAGGCAACA 2 15 1 GCCCAACGGC 0.380839 -133 GCTCATCGGAGTCGCCCACCTGCTATCGCC 2 66 1 GTCGCCCACC 0.884903 -82 GGCTGATCCAGCCGATCGGCCGCGCTGGCC 5 36 1 GCCGATCGGC 0.465927 -265 CGGCCGCGCTGGCCAACAGCGACTCCGTCG 5 52 1 GGCCAACAGC 0.670122 -249 CGCGTGCCATGTCAATCCGCGGGTCTTGAC 5 187 1 GTCAATCCGC 0.243956 -114 CGACCTAACCGCCCAACTCCTTCTCATCGC 7 18 0 GCCCAACTCC 0.670245 -283 CATCGCGCTGCGCGCTCTGCATCGTCGTCG 7 52 0 CGCGCTCTGC 0.669841 -249 CGACCTAACCGCCCAACTCCTTCTCATCGC 7 76 0 GCCCAACTCC 0.670245 -225 CATCGCGCTGCGCGCTCTGCATCGTCGTCG 7 110 0 CGCGCTCTGC 0.669841 -191 AGCGCCACCAGCCCATCACCGGCGGGCGTC 7 164 0 GCCCATCACC 0.831865 -137 ATGGGCTGGTGGCGCTCACCCCGTTCCGGA 7 178 1 GGCGCTCACC 0.755689 -123 CCGTTACGGTGCCGACCACCTCGGCGGTAT 8 52 1 GCCGACCACC 0.961206 -105 GTATGAACGCGCTGCGCAGCGGACCGAGGA 8 78 1 GCTGCGCAGC 0.479956 -79 CTCACGCACTCCCGCACTCCTCATCGTGGA 8 125 0 CCCGCACTCC 0.816774 -32 TGCGCTGTTTGCCAAACAGCATGTGAACGG 9 63 1 GCCAAACAGC 0.738871 -111 GGTCATCAGCGCCACTCTCCCCCGCAAGCG 10 60 0 GCCACTCTCC 0.801962 -168 GGTCATCAGCGCCACTCTCCCCCGCAAGCG 10 137 0 GCCACTCTCC 0.801962 -91 CAGCGCCACTCTCCCCCGCAAGCG 10 214 0 GCCACTCTCC 0.801962 -14 TACCGTCGGAGCCGCACACCGTCACAGCGA 11 34 0 GCCGCACACC 0.974751 -23 AGGCCTGGCCGCCAACCGCCCTACCGCGTT 12 49 1 GCCAACCGCC 0.569783 -107 CGACGGTCCCGACGCTCACCAAAGGCAATC 12 99 0 GACGCTCACC 0.421616 -57 GGGGCGGCTCGCCGCGCCGCCGGGAGACGA 13 17 0 GCCGCGCCGC 0.824493 -112 GTGGCGTCGCGGCCCTCACCGGCGACACCA 13 87 1 GGCCCTCACC 0.869714 -42 CCCGCGCGCACCCCGCGAGCAG 15 3 1 CGCGCGCACC 0.935224 -128 TCTGTGTCTGCTCGCCCAGCACGCGACCCG 15 70 1 CTCGCCCAGC 0.555237 -61 CGGCGGCTCACCCTCCCACCCTGCTGGACG 15 98 1 CCCTCCCACC 0.491209 -33 GAACTCTTCCGCCAAGCAGCACAAATCGCC 17 154 1 GCCAAGCAGC 0.895522 -147 CGCATACCACGGCGCGCCTCTCAGGCCAGT 17 259 1 GGCGCGCCTC 0.7976 -42 GCTGGCTTAAGGCCCGCGCCGTCAATTACA 21 12 1 GGCCCGCGCC 0.768451 -99 TTACAACGTGGCCGCACACCGGTTGGTGTG 21 37 1 GCCGCACACC 0.974751 -74 TAACAACGTGGCCACACACCAACCGGTGTG 21 51 0 GCCACACACC 0.898721 -60 TCCGCCACGCGGCCACCACCGCGCCGATCA 23 74 1 GGCCACCACC 0.826218 -72 GCCTAGAATCCGCGCGCCGCGCGTCTCATT 25 37 1 CGCGCGCCGC 0.915236 -264 AGTGTGCTAGCCCGGGCACCAGATCACACC 25 77 1 CCCGGGCACC 0.583937 -224 ACCTGCCGGCCGCTAGCACCCCGGGCCGAC 25 260 0 CGCTAGCACC 0.382097 -41 CCCACCGAACGGCGAGCATCGTTGCCGGGA 26 24 0 GGCGAGCATC 0.684197 -126 CTCATTCTCCTCCGCCCCCCTTTTTCAGCG 26 125 0 TCCGCCCCCC 0.397242 -25 ACGACGTTACCGCGCACTGCTCTATTGGGC 27 22 0 CGCGCACTGC 0.658478 -23 CATGGTTGACGGCGATCACCACATCGAGCG 29 118 1 GGCGATCACC 0.83529 -183 ACACCACAACGGTGCCCAGCCATTCGCACC 31 17 0 GGTGCCCAGC 0.480635 -122 ACGGGGCGTGGTCGCGCCCCGGGCAATAGC 31 93 1 GTCGCGCCCC 0.923331 -46 GGTCAATGGTGCCACGCCGCCCTATCCCAA 32 14 0 GCCACGCCGC 0.940055 -21 ATCGGCCCGCGGTGCCCCCCTACCCGGTTA 33 147 1 GGTGCCCCCC 0.612835 -154 TACGGGGGTTGCTGCGCCCCGTAACTA 34 8 0 GCTGCGCCCC 0.597621 -31 GACTCGCGGTGCCGCGCCCGGTACGCCACG 35 19 0 GCCGCGCCCG 0.717248 -71 CCGGGGACATGGCGAACAGCGGCGGCTCGC 35 48 1 GGCGAACAGC 0.897129 -42 TCGGCGGTATGCCGACCACCATGAACCAAG 37 24 1 GCCGACCACC 0.961206 -52 TTTCCAGGTCGCGGCGCTCCGGCCACTGAC 40 20 0 GCGGCGCTCC 0.410536 -66 CGACAGGCTAGCCGCCCCGCCCCCATTCCT 41 13 1 GCCGCCCCGC 0.963514 -36 ATCGGGCAGACGCGCGCAGCCCGACACGAC 43 23 1 CGCGCGCAGC 0.904222 -159 ACAGTCGTGGGCCGCGCCTCGGGTTTAGCT 45 44 0 GCCGCGCCTC 0.856649 -42 CCGATTGCCCGGCTATCTGCCGTGGGATAA 46 20 0 GGCTATCTGC 0.198412 -107 GTGTCCCGCCGGCACGCAGCAGCCGGCGTA 47 113 0 GGCACGCAGC 0.91881 -82 GGCGAGCTCCTCATCTTGAG 47 185 0 GGCGAGCTCC 0.934328 -10 GGACAAAACTGGCGCACCACACGGGCGTTT 50 35 0 GGCGCACCAC 0.506155 -35 GTGCCTCCCACCCGCGAGCAGA 51 3 1 GCCTCCCACC 0.797616 -94 TTTGCGTCTGCTCGCGCCGCCACCGACAGG 51 69 1 CTCGCGCCGC 0.68924 -28 AGACATAAGACGCAAACTGCTCTATTGTCA 53 51 1 CGCAAACTGC 0.165423 -58 ATGGGTACCACCCGAGCCCCCGCCGTCTAA 55 21 0 CCCGAGCCCC 0.930525 -182 TACCCATCGCGCCGCGCTGCGGTGCGGGTC 55 44 1 GCCGCGCTGC 0.93778 -159 GACGATGCACGCCGCGCAGCGGCGTGAGGA 55 105 0 GCCGCGCAGC 0.685341 -98 GACGATGCACGCCGCGCAGCGGCGTGAGGA 55 163 0 GCCGCGCAGC 0.685341 -40 TCGCGCGGGCGGCGGCCACCTCGGACCCTG 56 29 0 GGCGGCCACC 0.647683 -208 ATTCACCGCTGGCAAACCCCTTAAAAGCAC 56 77 1 GGCAAACCCC 0.718758 -160 AGAAAAGCCAGCCTAACCCCGGATCCACAC 56 186 0 GCCTAACCCC 0.528604 -51 CGGTCGGGCCGCCGATCACCTACTCTGCAC 58 44 1 GCCGATCACC 0.883736 -25 TCAACCGCTGGTCAAGCCCCGATTTCGGTG 59 72 0 GTCAAGCCCC 0.587532 -24 CTTGACCGCGGCCCATCACCCGTGGCAGGA 60 84 0 GCCCATCACC 0.831865 -210 CCGCGGTCAAGCTACGCTCCCGTCAATTCA 60 103 1 GCTACGCTCC 0.357773 -191 ATTCATGCCGGCCGATCCGCACTCTATTGA 60 128 1 GCCGATCCGC 0.891334 -166 GGCAATCTGAGCCAAACACCGGGTGATCGG 60 179 1 GCCAAACACC 0.812165 -115 GTGGTTGGTTGCCGATCACCCGGTGTTTGG 60 190 0 GCCGATCACC 0.883736 -104 CACGGCTGCAGCCCAGCACCGCGACCCGGG 60 244 1 GCCCAGCACC 0.934312 -50 TCGCCGCGCCCGTCGCACCAAG 63 3 1 GCCGCGCCCG 0.717248 -162 GCACGTCGGCGGCACGCGCCGCTGGCTTCG 63 64 1 GGCACGCGCC 0.75514 -101 GCAATTCGGAGGCGAGCTGCCCTAACGTTT 66 110 0 GGCGAGCTGC 0.902835 -141 AGCTCTGGCGGCCGAGCCTCCTCCAAACGT 66 147 1 GCCGAGCCTC 0.748821 -104 CAAGTCGGCAGTCGACCAGCGGATGTCAAC 66 175 0 GTCGACCAGC 0.712411 -76 TCCAAAATCGCCCAAACAGCGTCCTTGTCG 66 225 0 CCCAAACAGC 0.409324 -26 ACGCCAATTGGTCGCTCTCCGTCGCCGTTG 67 29 0 GTCGCTCTCC 0.698345 -272 GCAGCCCGGTCGCCAGCAGCCGCTACTGGT 67 103 1 CGCCAGCAGC 0.602489 -198 TGCCCGCTAAGCTGCTCACCATCCGTACAC 69 54 0 GCTGCTCACC 0.469953 -247 CTGGTCAAACCTCGCCCACCCGGCAACCGC 69 96 0 CTCGCCCACC 0.656088 -205 GGACCGCGCCGGCCAGCAGCGAAAACCACC 69 198 1 GGCCAGCAGC 0.860117 -103 ********** Masking position 7 Map Score: 107.835 Number of sites scoring better than the average of aligned sites = 23944 Number in coding regions = 22269 Number in noncoding regions = 1675 Number of orfs with sites within 600 bp upstream = 926 Fraction of orfs with sites within 600 bp upstream = 0.148731 Motif number 4 TGCGCCACCTCGACGCGGAGGCACCAGCGGGT 1 83 1 CGACGGGGGC 0.958537 -195 GCGACTCCGATGAGCTGGCGCCACTCATCGCA 2 49 0 TGAGCGGGCC 0.910639 -99 TGCTATCGCCATCCCGGGCGCCGGACCTACGT 2 86 1 ATCCCGGGCC 0.650217 -62 GGGGTCTGAGAGTGGGCGCGCCTGCCCTTACC 3 66 1 AGTGGCGGCC 0.924594 -64 AGCTCACACTACCGCCGGGGCCACAATGGCTT 4 13 0 ACCGCGGGCC 0.85629 -55 TACATGATTTTGACGAGGAGCCGAATACG 4 49 1 TGACGGGGCC 0.964457 -19 ACTAGTCCTCCCTGGAGGAGCCGACGCTTGCC 5 215 1 CCTGGGGGCC 0.968955 -86 TCACCATCGACTCCGAGTCGCCCACGGGGCGA 6 23 1 CTCCGGTGCC 0.791853 -89 AACACGTCGACTCCGAGTCGCCCCGTGGGCGA 6 40 0 CTCCGGTGCC 0.791853 -72 GACGGTACCCACGAGGTGGCTCACGCATTC 6 92 0 CCACGGGGGC 0.930951 -20 AGTTGGGCGGTTAGGTCGAGCCCGACGACGAT 7 30 1 TTAGGCGGCC 0.833158 -271 AGTTGGGCGGTTAGGTCGAGCCCGACGACGAT 7 88 1 TTAGGCGGCC 0.833158 -213 CTTGTCCGATTTTGGCCTTGCCGCGCTAGGGC 9 122 1 TTTGGCTGCC 0.500097 -52 AGCGTAGCGATGAGGTGGGGGCACCACCCGCT 10 32 1 TGAGGGGGGC 0.948229 -196 AGCGTAGCGATGAGGTGGGGGCACCACCCGCT 10 109 1 TGAGGGGGGC 0.948229 -119 AGCGTAGCGATGAGGTGGGGGCACCACCCGCT 10 186 1 TGAGGGGGGC 0.948229 -42 CCTCATGCGACGAGGCCTGGCCGCCAACCGCC 12 37 1 CGAGGCTGCC 0.890149 -119 TGTGCATCGTCTCCCGGCGGCGCGGCGAGCC 13 10 1 TCTCCGGGGC 0.657913 -119 TAGGCATAGCTGAGGTGGCGTCGCGGCCCTCA 13 73 1 TGAGGGGGTC 0.42142 -56 CGAGATCCTCTGTGGTGTCGCCGGTGAGGGCC 13 97 0 TGTGGGTGCC 0.879574 -32 GCGAGTGTATTCACGGCGCGCCGTGGATTGAG 14 14 1 TCACGCGGCC 0.899601 -128 GCCCAGCACGCGACCCGGCGGCTCACCCTCCC 15 83 1 CGACCGGGGC 0.865975 -48 CCCTGCCGTTCCACGCCTGGGCGCAGGCACAA 17 34 1 CCACGCTGGC 0.638585 -267 AACCCGCATACCACGGCGCGCCTCTCAGGCCA 17 255 1 CCACGCGGCC 0.938257 -46 TGTCCTCCTGAGTCGTCGGGCCGGG 22 4 0 AGTCGCGGCC 0.901241 -23 CTGTGATCGGCGCGGTGGTGGCCGCGTGGCGG 23 75 0 CGCGGGGGGC 0.978662 -71 CGCGCCCGGGCGCCCAATAGAGCA 27 3 1 CGCCCGGGCC 0.947803 -42 GGCCGCGGGGTCTGGGCGGGCCATATCGGCCC 28 28 0 TCTGGCGGCC 0.912438 -24 ACGTGCCAGCACCGGAGGAGGCGGGACTATGG 29 40 1 ACCGGGGGGC 0.915422 -261 CGTACCGTACCGTGCCGGCGGCCAAAGCGCCC 30 22 0 CGTGCGGGGC 0.88255 -46 AGGTACGGGGCGTGGTCGCGCCCCGGGCAATA 31 89 1 CGTGGCGGCC 0.968054 -50 GGGACGATCGGCCCGCGGTGCCCCCCTACCCG 33 141 1 GCCCGGGGCC 0.67028 -160 TGGCCACTGTTGTCGAGGTGCCTTAAATGACG 33 251 1 TGTCGGGGCC 0.95916 -50 ATGTCCCCGGACTCGCGGTGCCGCGCCCGGTA 35 26 0 ACTCGGGGCC 0.90384 -64 GGTTGCCTTTCCAGGTCGCGGCGCTCCGGCCA 40 25 0 CCAGGCGGGC 0.911169 -61 TTCGTACATCTCTCGGGTTGCCTTTCCAGGTC 40 40 0 TCTCGGTGCC 0.760203 -46 TAGCTAAACCCGAGGCGCGGCCCACGACTGTC 45 43 1 CGAGGGCGCC 0.630129 -43 TAGCCGGGCAATCGGGCTTGCCCGGTGACGCT 46 35 1 ATCGGCTGCC 0.539411 -92 TAGCCGTGATCCAGCGCGAGCCTTCGGCCTCG 46 72 1 CCAGCCGGCC 0.850903 -55 AGCGCGAGCCTTCGGCCTCGGCGCATCGACGC 46 84 1 TTCGGCTGGC 0.461593 -43 CCGGTCATCTAGCGGAGGCGCCGCCAGGGCGG 47 149 0 AGCGGGGGCC 0.973644 -46 CCATGCGAATTTTCGCGGTGGCGTTACGCTCG 48 27 0 TTTCGGGGGC 0.740531 -274 AATTGGTCGGCGCGTTGGTGCCTGACTAGCCC 48 180 1 CGCGTGGGCC 0.60836 -121 CGATTTTGCGTCTGCTCGCGCCGCCACCGACA 51 65 1 TCTGCCGGCC 0.744417 -32 CGCAGCGGCGTGAGGAGGAGCCGAGCAGTCAA 55 89 0 TGAGGGGGCC 0.973304 -114 CGCAGCGGCGTGAGGAGGAGCCGAGCAGTCCA 55 147 0 TGAGGGGGCC 0.973304 -56 ACAACCGTCTCGCGCGGGCGGCGGCCACCTCG 56 36 0 CGCGCGGGGC 0.926397 -201 CCCATCGACGAGCGGGGTTGCCGA 56 223 1 AGCGGGTGCC 0.895293 -14 CGAGGTCATTGCCCGAGCCTAGCGCTGCG 57 8 1 ATTGCCGGCC 0.453265 -52 GGTTTCGTGTCGTCGTGTTGGCGAGCGCAGCG 57 33 0 CGTCGGTGGC 0.822419 -27 CGCGGCTCCTCGCGGTCGGGCCGCCGATCACC 58 32 1 CGCGGCGGCC 0.981022 -37 TTTGGCTCAGATTGCCGGTGCCGCATGATGGT 60 163 0 ATTGCGGGCC 0.594185 -131 GCTGGGCTGCAGCCGTGTCGGCGTGACTGTCC 60 229 0 AGCCGGTGGC 0.761727 -65 CTGTTTTGGGCCTCGGCGAGCCGACACGCCTC 61 112 1 CCTCGCGGCC 0.929342 -51 CGGCGAGCCGACACGCCTCGGCGTTCTCAGCT 61 125 1 ACACGCTGGC 0.416894 -38 GTCTGCAGAAACCCGGCTCGCCTTGGTGCGAC 63 22 0 ACCCGCTGCC 0.677563 -143 CGGCGCGTGCCGCCGACGTGCCCGGGCGCTGG 63 53 0 CGCCGCGGCC 0.974666 -112 GATGTCAACGTTTGGAGGAGGCTCGGCCGCCA 66 152 0 TTTGGGGGGC 0.793166 -99 TTGCTTCAGCAGCCCGGTCGCCAGCAGCCGCT 67 95 1 AGCCCGTGCC 0.640097 -206 CTGAAGCGGTTGCCGGGTGGGCGAGGTTTGAC 69 91 1 TGCCGGTGGC 0.823275 -210 CCAGACATAGCGAGGAGACGCCC 69 288 1 CGAGGGAGCC 0.534768 -13 ***** ** *** Masking position 10 Map Score: 95.9207 Number of sites scoring better than the average of aligned sites = 21000 Number in coding regions = 19600 Number in noncoding regions = 1400 Number of orfs with sites within 600 bp upstream = 840 Fraction of orfs with sites within 600 bp upstream = 0.134918 Motif number 5 GTCGAGGTGGCGCACCACGCAGAGTGTTCC 1 67 0 CGCACCACGC 0.374835 -211 GCCCGCCGCGGCCAACCCGCTGGTGCCTCC 1 99 0 GCCAACCCGC 0.583297 -179 CAACGTGCCCCGGAAGCCGCGCTACATTTG 1 212 1 CGGAAGCCGC 0.595571 -66 CGCCCACTCTCAGACCCCGCTCCCGGGACT 3 54 0 CAGACCCCGC 0.950181 -76 TCGTAGATGTCAGGCCCAGCTGATCCGGTC 5 110 0 CAGGCCCAGC 0.474378 -191 GAGGACTAGTCAAGACCCGCGGATTGACAT 5 195 0 CAAGACCCGC 0.942626 -106 GACGACGATGCAGAGCGCGCAGCGCGATGA 7 53 1 CAGAGCGCGC 0.563918 -248 GACGACGATGCAGAGCGCGCAGCGCGATGA 7 111 1 CAGAGCGCGC 0.563918 -190 ACGGGGTGAGCGCCACCAGCCCATCACCGG 7 172 0 CGCCACCAGC 0.414976 -129 CCATCAGCCGCCGAAACCGCCGGCAGGTGG 9 23 0 CCGAAACCGC 0.787494 -151 GAGGTGGGGGCACCACCCGCTTGCGGGGGA 10 43 1 CACCACCCGC 0.962767 -185 GAGGTGGGGGCACCACCCGCTTGCGGGGGA 10 120 1 CACCACCCGC 0.962767 -108 GAGGTGGGGGCACCACCCGCTTGCGGGGGA 10 197 1 CACCACCCGC 0.962767 -31 CCGTCGGAGCCGCACACCGTCACAGCGAGG 11 32 0 CGCACACCGT 0.344666 -25 GGTTGGCGGCCAGGCCTCGTCGCATGAGGT 12 36 0 CAGGCCTCGT 0.140895 -120 GAGGCCTGGCCGCCAACCGCCCTACCGCGT 12 48 1 CGCCAACCGC 0.854616 -108 CCGCTCAATCCACGGCGCGCCGTGAATACA 14 19 0 CACGGCGCGC 0.781421 -123 AACAGTCTGCCAGGAATCGCCAAATCAGCT 14 59 0 CAGGAATCGC 0.284039 -83 CCCGCGCGCACCCCGCGAGCAGACAC 15 7 1 CGCACCCCGC 0.968326 -124 TCGCCCAGCACGCGACCCGGCGGCTCACCC 15 81 1 CGCGACCCGG 0.726631 -50 GGCTCACCCTCCCACCCTGCTGGACGGTAA 15 102 1 CCCACCCTGC 0.608118 -29 TGGGCGCAGGCACAAACCGCACCAACATTG 17 51 1 CACAAACCGC 0.848404 -250 TGTCAGCAGGCGAAACCCGCGCGGACGAGA 17 126 1 CGAAACCCGC 0.904991 -175 CGCCAAGCAGCACAAATCGCCCTACTCTTG 17 163 1 CACAAATCGC 0.257793 -138 GACCACCAAACAAAACCCGTCCATGGGGCC 17 192 1 CAAAACCCGT 0.418887 -109 ACCTCGTCGAACAAACCCGCATACCACGGC 17 242 1 ACAAACCCGC 0.0890959 -59 ACCCGCATACCACGGCGCGCCTCTCAGGCC 17 256 1 CACGGCGCGC 0.781421 -45 ACCCGGAAACCGAGATCCGCTTTCTCACCG 18 34 1 CGAGATCCGC 0.367148 -148 AGCTGGCTTAAGGCCCGCGCCGTCAATT 21 9 1 TAAGGCCCGC 0.352618 -102 CGTGGCCACACACCAACCGGTGTGCGGCCA 21 45 0 CACCAACCGG 0.246222 -66 CCCGGCCCGACGACTCAGGA 22 1 1 CCCGGCCCGA 0.41606 -26 CGCCACGCGGCCACCACCGCGCCGATCACA 23 76 1 CCACCACCGC 0.714882 -70 GCCTAGAATCCGCGCGCCGCGCGTCTCATT 25 37 1 CGCGCGCCGC 0.826494 -264 ACACTATCCACTCAACCCGCGAGCGACCGA 26 56 0 CTCAACCCGC 0.604631 -94 ACGACGTTACCGCGCACTGCTCTATTGGGC 27 22 0 CGCGCACTGC 0.378302 -23 ATGGCCCGCCCAGACCCCGCGGCCGG 28 36 1 CAGACCCCGC 0.950181 -16 CCGGATTTCGCGGCAGCCGCAGGAAAACTT 29 179 0 CGGCAGCCGC 0.600225 -122 GGCCAAAGCGCCCGGCCAGCGACT 30 5 0 CCCGGCCAGC 0.496102 -63 GGGGCGCGACCACGCCCCGTACCTCAGGCG 31 83 0 CACGCCCCGT 0.804351 -56 GGGGCGTGGTCGCGCCCCGGGCAATAGCGT 31 95 1 CGCGCCCCGG 0.756688 -44 CCAGCGGAGTCCAAACCCGCCAAAGATAAG 33 37 0 CCAAACCCGC 0.904984 -264 GGGGAAATGCCGAATCCCGCATCCGGTGGA 33 91 1 CGAATCCCGC 0.358868 -210 ACACATTCCACACGAAACGCGTTAGTGTGC 33 183 1 CACGAAACGC 0.16321 -118 CGGGGCGCAGCAACCCCCGTAACCTCTACC 34 17 1 CAACCCCCGT 0.462334 -22 CGCCATGTCCCCGGACTCGCGGTGCCGCGC 35 32 0 CCGGACTCGC 0.648487 -58 ATTTGACGCCCGAGACCCGC 36 61 1 CGAGACCCGC 0.944217 -10 CACCATGAACCAAGGTCCGCAACGCATCGA 37 40 1 CAAGGTCCGC 0.30963 -36 CGACAGGCTAGCCGCCCCGCCCCCATTCCT 41 13 1 GCCGCCCCGC 0.740881 -36 CAGCCCGAACTCGACCCCGCGCAGGTGCAG 42 45 0 TCGACCCCGC 0.449859 -76 TCGGGCTGCTCCGAGTCCGCTAGGCCCACA 42 67 1 CCGAGTCCGC 0.312612 -54 CCGCTAGGCCCACAACCTGCTTCAGCAACG 42 83 1 CACAACCTGC 0.562821 -38 GTCGATGAACCAATCACCGCCGTCACGGCA 44 22 0 CAATCACCGC 0.0882442 -65 CGGATCAAGACTGACACCGCGGATTTGACT 48 83 1 CTGACACCGC 0.202416 -218 CGAGCACCAACGCGACCCTCGTGCAGCAGC 48 215 1 CGCGACCCTC 0.299508 -86 GTGCCTCCCACCCGCGAGCAGACGC 51 6 1 TCCCACCCGC 0.5258 -91 AGACATAAGACGCAAACTGCTCTATTGTCA 53 51 1 CGCAAACTGC 0.226404 -58 GGGTTCCCTACGCGACCCGTCATCCTCGCA 54 24 1 CGCGACCCGT 0.783546 -67 GGTACCACCCGAGCCCCCGCCGTCTAAGCT 55 18 0 GAGCCCCCGC 0.510257 -185 TGGTACCCATCGCGCCGCGCTGCGGTGCGG 55 41 1 CGCGCCGCGC 0.844013 -162 TTGACGATGACCCGCACCGCAGCGCGGCGC 55 52 0 CCCGCACCGC 0.922986 -151 GGCGACGATGCACGCCGCGCAGCGGCGTGA 55 108 0 CACGCCGCGC 0.840052 -95 GGCGACGATGCACGCCGCGCAGCGGCGTGA 55 166 0 CACGCCGCGC 0.840052 -37 CCGAGGTGGCCGCCGCCCGCGCGAGACGGT 56 35 1 CGCCGCCCGC 0.954991 -202 AATACAACGGCGACAACCGTCTCGCGCGGG 56 50 0 CGACAACCGT 0.143154 -187 TCGGCAACCCCGCTCGTCGATGG 56 224 0 GCAACCCCGC 0.373784 -13 CGGTGCCGACCAAGGCCGGCTAGGATGCCC 59 47 0 CAAGGCCGGC 0.353949 -49 AACCGCTGGTCAAGCCCCGATTTCGGTGCC 59 70 0 CAAGCCCCGA 0.271066 -26 TTCACTTCCCCCGGAACTGCGGCAGTCTAG 60 28 1 CCGGAACTGC 0.250507 -266 GACCGCGGCCCATCACCCGTGGCAGGAAAC 60 81 0 CATCACCCGT 0.0396639 -213 AACCATCATGCGGCACCGGCAATCTGAGCC 60 162 1 CGGCACCGGC 0.417562 -132 CGGCTGCAGCCCAGCACCGCGACCCGGGGC 60 246 1 CCAGCACCGC 0.813766 -48 TAGCTGAAGACCAAACCGGCACAGCAGACA 61 64 0 CCAAACCGGC 0.285105 -99 TCGCCGCGCCCGTCGCACCAAGG 63 4 1 CCGCGCCCGT 0.514622 -161 TCTGCAGAAACCCGGCTCGCCTTGGTGCGA 63 23 0 CCCGGCTCGC 0.695337 -142 TTCTGCAGACCAGCGCCCGGGCACGTCGGC 63 44 1 CAGCGCCCGG 0.430591 -121 ACGTCGGCGGCACGCGCCGCTGGCTTCGAT 63 66 1 CACGCGCCGC 0.822181 -99 CGGCGTCGGACCCGCCGCTGCGGTG 65 6 1 TCGGACCCGC 0.553546 -44 GGCGTCGTTTCAACGCCCGCAGTATGTCGT 66 65 0 CAACGCCCGC 0.882463 -186 CCACGGTCCAAAATCGCCCAAACAGCG 66 234 0 CCAAAATCGC 0.115395 -17 GCTGCTGAAGCAAATCCCGCTGCCACGCTT 67 78 0 CAAATCCCGC 0.352046 -223 GCCCGGTCGCCAGCAGCCGCTACTGGTACC 67 106 1 CAGCAGCCGC 0.593057 -195 ACCGCCCGGATCCGGCCCGCTGGCAGGCTC 67 162 1 TCCGGCCCGC 0.605568 -139 GGGGCACGTTCGGAGCCTGCCAGCGGGCCG 67 174 0 CGGAGCCTGC 0.404408 -127 GTCCCACAAACACAACCCGCCTGCAGACGA 68 38 1 CACAACCCGC 0.962067 -34 ATCCGTACACCCGAGACCGCCACACTCACA 69 34 0 CCGAGACCGC 0.746698 -267 CTCGCCCACCCGGCAACCGCTTCAGGGCAT 69 86 0 CGGCAACCGC 0.790724 -215 TTCGCCTGGTCAAACCTCGCCCACCCGGCA 69 101 0 CAAACCTCGC 0.401698 -200 TGGATTAGTCCAGGGACCGCGCCGGCCAGC 69 185 1 CAGGGACCGC 0.835793 -116 ********** Masking position 9 Map Score: 55.9655 Number of sites scoring better than the average of aligned sites = 29309 Number in coding regions = 27149 Number in noncoding regions = 2160 Number of orfs with sites within 600 bp upstream = 1096 Fraction of orfs with sites within 600 bp upstream = 0.176036 Motif number 6 CCAGCGGGTTGGCCGCGGCGGGCTCGCTCTT 1 106 1 GGCGCGGCGG 0.926454 -172 CCAATTGCGGGGATTCGGCTGTCCAACACGC 1 179 0 GGTTCGGCTG 0.866891 -99 AATGTAGCGCGGCTTCCGGGGCACGTTGCGC 1 209 0 GGTTCCGGGG 0.86917 -69 GTTGCCTGCGCCGTTGGGCGGGATGCAACAC 2 13 0 CCTTGGGCGG 0.702264 -135 CCCGCTCCCGGGACTCCCGTGTCTACAGGGT 3 38 0 GGCTCCCGTG 0.527773 -92 GTCTGAGAGTGGGCGCGCCTGCCCTTACCGT 3 69 1 GGCGCGCCTG 0.548651 -61 CCTTGACCTCCCTTCGCCGGCATGATCCGG 3 110 0 CCTTCGCCGG 0.482699 -20 AAGCCATTGTGGCCCCGGCGGTAGTGTGAGC 4 13 1 GGCCCGGCGG 0.876932 -55 AGTCGCTGTTGGCCAGCGCGGCCGATCGGCT 5 45 0 GGCAGCGCGG 0.892703 -256 ACGATCAGAAGGTTTCCCCGGCAAGTCGCGT 5 161 1 GGTTCCCCGG 0.927424 -140 CGATGAGAAGGAGTTGGGCGGTTAGGTCGAG 7 19 1 GATTGGGCGG 0.552869 -282 CGATGAGAAGGAGTTGGGCGGTTAGGTCGAG 7 77 1 GATTGGGCGG 0.552869 -224 TGATGGTTTAGCGTTCCGCTGTGCCTCTTCA 7 258 1 GCTTCCGCTG 0.370005 -43 CGGTGCCGACCACCTCGGCGGTATGAACGCG 8 58 1 CACTCGGCGG 0.571228 -99 ACCTGCCGGCGGTTTCGGCGGCTGATGGTGT 9 25 1 GGTTCGGCGG 0.968265 -149 GGGCACCACCCGCTTGCGGGGGAGAGTGGCG 10 50 1 CGTTGCGGGG 0.841307 -178 GGGCACCACCCGCTTGCGGGGGAGAGTGGCG 10 127 1 CGTTGCGGGG 0.841307 -101 GGGCACCACCCGCTTGCGGGGGAGAGTGGCG 10 204 1 CGTTGCGGGG 0.841307 -24 CATGCGACGAGGCCTGGCCGCCAACCGCCCT 12 40 1 GGCTGGCCGC 0.591526 -116 GAGGACAACGCGGTAGGGCGGTTGGCGGCCA 12 54 0 CGTAGGGCGG 0.781674 -102 CATCGTCTCCCGGCGGCGCGGCGAGCCGCCC 13 15 1 CGCGGCGCGG 0.869159 -114 GATCCTCTGTGGTGTCGCCGGTGAGGGCCGC 13 95 0 GGGTCGCCGG 0.555207 -34 GGCGCGCCGTGGATTGAGCGGCAACGGTCCA 14 28 1 GGTTGAGCGG 0.392308 -114 GCCCAGCACGCGACCCGGCGGCTCACCCTCC 15 83 1 CGCCCGGCGG 0.833346 -48 TGCCGTTCCACGCCTGGGCGCAGGCACAAAC 17 37 1 CGCTGGGCGC 0.692759 -264 CGTCCGCGCGGGTTTCGCCTGCTGACACACG 17 122 0 GGTTCGCCTG 0.745624 -179 GCAGCGCCTGAGACTGGCCTGAGAGGCGCGC 17 270 0 AGCTGGCCTG 0.0854685 -31 AAGCGGATCTCGGTTTCCGGGTATACGGAGC 18 25 0 CGTTTCCGGG 0.227828 -157 CGGGATGTCGGGCTTCGGCGGTGAGAAAGCG 18 51 0 GGTTCGGCGG 0.968265 -131 AACGATGACGGGATTGTGCTGGATCACACT 19 48 1 GGTTGTGCTG 0.195485 -20 CGGTTTTGCCGCATTGCGCTGGACGGGTCG 20 14 1 GCTTGCGCTG 0.400646 -20 CCTCCTGAGTCGTCGGGCCGGG 22 2 0 CGCGGGCCGG 0.81965 -25 GGGGTATTCCGTTTCCGTGGAGTTATTTGG 24 57 0 CGTTCCGTGG 0.187654 -20 TCCTTAACAAGGTCTTGGCGGCTGACATGGC 25 107 0 GGCTTGGCGG 0.88262 -194 CGACTGTGGAGGCTTGGCCGGTTAGCGTTAC 25 194 1 GGTTGGCCGG 0.939867 -107 AAACACACAGGGTCGGCCCGGGGTGCTAGCG 25 249 1 GGCGGCCCGG 0.85779 -52 CTGCTCTATTGGGCGCCCGGGCGCG 27 5 0 GGCGCCCGGG 0.553517 -40 CCGGCCGCGGGGTCTGGGCGGGCCATATCGG 28 31 0 GGCTGGGCGG 0.983821 -21 TAGAAATGCCGGATTTCGCGGCAGCCGCAGG 29 186 0 GGTTTCGCGG 0.799831 -115 ACCTCAGGCGGGGATCCGCGGATTCAACAGT 31 62 0 GGATCCGCGG 0.705073 -77 CCATTGGGATAGGGCGGCGTGGCACCA 32 7 1 GGTAGGGCGG 0.836246 -28 TGGCGGGTTTGGACTCCGCTGGTATCCCACG 33 45 1 GGCTCCGCTG 0.913884 -256 TGCCGAATCCCGCATCCGGTGGATCGTGAAG 33 98 1 CGATCCGGTG 0.0772511 -203 CCGGGTAGGGGGGCACCGCGGGCCGATCGTC 33 143 0 GGCACCGCGG 0.879602 -158 TCGGTAGAGGTTACGGGGGTTGCTGCGCC 34 20 0 GGTACGGGGG 0.512168 -19 CGCGGCACCGCGAGTCCGGGGACATGGCGAA 35 33 1 CGGTCCGGGG 0.297455 -57 GCGGGTCTCGGGCGTCAAATTCCG 36 57 0 GGCTCGGGCG 0.394586 -14 CCGTCTGGACGAATCGGCGGTATGCCGACC 37 10 1 CGATCGGCGG 0.643024 -66 TACGTTCGGGCGACTGCCCGGGCAGTTTGC 39 10 0 CGCTGCCCGG 0.946968 -31 GCAGGAATGGGGGCGGGGCGGCTAGCCTGTC 41 14 0 GGCGGGGCGG 0.933912 -35 GGTCTGCCCCCGACAGGGCGGACGGGCGCAG 42 14 1 CGCAGGGCGG 0.862438 -107 GGCGCAGCTGCACCTGCGCGGGGTCGAGTTC 42 38 1 CACTGCGCGG 0.585054 -83 TAGTCGTGTCGGGCTGCGCGCGTCTGCCCGA 43 24 0 GGCTGCGCGC 0.74958 -158 ATTGTCATCGGGACTTCACGGTGTGC 45 6 0 GGCTTCACGG 0.0880447 -80 CGGGCAAGCCCGATTGCCCGGCTATCTGCCG 46 28 0 CGTTGCCCGG 0.910693 -99 CGGGCAATCGGGCTTGCCCGGTGACGCTACA 46 39 1 GGTTGCCCGG 0.935667 -88 CGAGGCCGAAGGCTCGCGCTGGATCACGGCT 46 73 0 GGTCGCGCTG 0.47986 -54 GCGAGCCTTCGGCCTCGGCGCATCGACGCCC 46 87 1 GGCTCGGCGC 0.738689 -40 CGGTCCGCGGGGATTATCCGGG 46 115 0 GGCCGCGGGG 0.639116 -12 CGCCGTTCAACGTCTCGCCTGCCTTCGTAGC 47 39 0 CGCTCGCCTG 0.782553 -156 GCGGAGGCGCCGCCAGGGCGGCTCCCAGTGT 47 139 0 CGCAGGGCGG 0.862279 -56 AATTCGCATGGGATTTCGCAGTGCCGTCACG 48 48 1 GGTTTCGCAG 0.0498184 -253 CGAGCATCCCGGGCTTTCCGGCCTTGTCCAT 48 145 0 GGCTTTCCGG 0.0998614 -156 TAGACGGCGGGGGCTCGGGTGGTACCCATCG 55 22 1 GGCTCGGGTG 0.727405 -181 CCTCCTCACGCCGCTGCGCGGCGTGCATCGT 55 103 1 CCCTGCGCGG 0.78136 -100 GAGCTGTGTTGGACTGCTCGGCTCCTCCTCA 55 138 1 GGCTGCTCGG 0.438448 -65 CCTCCTCACGCCGCTGCGCGGCGTGCATCGT 55 161 1 CCCTGCGCGG 0.78136 -42 AAGTTAAGCTCGATTGCCCGGCTCTAGCTGT 56 113 0 CGTTGCCCGG 0.910693 -124 TCGGACTGTTCGACACCGCGGGCAACCTGGC 56 145 0 CGCACCGCGG 0.836749 -92 TGTGGATCCGGGGTTAGGCTGGCTTTTCTTA 56 187 1 GGTTAGGCTG 0.126247 -50 GGTCAAGCCCCGATTTCGGTGCCGACCAAGG 59 62 0 CGTTTCGGTG 0.122751 -34 AATAGAGTGCGGATCGGCCGGCATGAATTGA 60 125 0 GGTCGGCCGG 0.67643 -169 ACAGTCACGCCGACACGGCTGCAGCCCAGCA 60 231 1 CGCACGGCTG 0.540406 -63 CCGGGTCGCGGTGCTGGGCTGCAGCCGTGTC 60 242 0 GTCTGGGCTG 0.12317 -52 GGCCTGTGCCCGATTGCCCCGGGTCGCGGTG 60 260 0 CGTTGCCCCG 0.347095 -34 TGCTGTTTTGGGCCTCGGCGAGCCGACACGC 61 110 1 GGCTCGGCGA 0.351371 -53 CGAGCCGACACGCCTCGGCGTTCTCAGCTAA 61 128 1 CGCTCGGCGT 0.401106 -35 GTAGGCCAACCGGTTCGCCGTGCCAACG 64 8 0 CGTTCGCCGT 0.14686 -91 ACCGCCTGCCCGGCTGCCCGGAAGGATTG 68 9 0 CGCTGCCCGG 0.946928 -63 TGAGTGTGGCGGTCTCGGGTGTACGGATGGT 69 36 1 GGCTCGGGTG 0.727412 -265 TGCCCTGAAGCGGTTGCCGGGTGGGCGAGGT 69 87 1 CGTTGCCGGG 0.704676 -214 GTACTTACGCGCCTTCGCCTGGTCAAACCTC 69 113 0 GCTTCGCCTG 0.221227 -188 CGAAAGTCGGCGATGCGGCTGCGACCTGGAT 69 159 1 CGTGCGGCTG 0.519567 -142 TTTCGCTGCTGGCCGGCGCGGTCCCTGGACT 69 191 0 GGCGGCGCGG 0.930084 -110 AGTCGGAGGTGGTTTTCGCTGCTGGCCGGCG 69 204 0 GGTTTCGCTG 0.460304 -97 CCTTCCAACTCGATTGGCCCGCGGGACAGTC 69 231 0 CGTTGGCCCG 0.363584 -70 ** ******** Masking position 11 Map Score: 110.622 Number of sites scoring better than the average of aligned sites = 31983 Number in coding regions = 30110 Number in noncoding regions = 1873 Number of orfs with sites within 600 bp upstream = 1035 Fraction of orfs with sites within 600 bp upstream = 0.166238 Motif number 7 TCGACGCGGAGGCACCAGCGGGTTGGCCGCGG 1 92 1 GGCCCACGGG 0.569022 -186 CTGGCGACCACCCAAGAGCGAGCCCGCCGCGG 1 118 0 CCCAGACGAG 0.758975 -160 CAGCCGAATCCCCGCAATTGGCGCAACGTGCC 1 189 1 CCCCAATGGC 0.639117 -89 AGACAGCTTGCCCGAAAACGGCAGAGGTCCCT 1 255 1 CCCAAACGGC 0.8583 -23 GTGTTGCATCCCGCCCAACGGCGCAGGCAACA 2 13 1 CCGCCACGGC 0.934432 -135 GGACGTAGGTCCGGCGCCCGGGATGGCGATAG 2 88 0 CCGCGCCGGG 0.925577 -60 ACACGGGAGTCCCGGGAGCGGGGTCTGAGAGT 3 47 1 CCCGGACGGG 0.60128 -83 TTGGCCAGCGCGGCCGATCGGCTGGATCAGCC 5 36 0 CGGCGACGGC 0.929998 -265 ACGAACTCGACCGACAACCGACCCGACGATCA 5 136 1 CCGCAACGAC 0.882106 -165 GTGAACGTCGCCCTAGCGCGGCAAGGCCAAAA 9 131 0 CCCAGCCGGC 0.567599 -43 GCCACTCTCCCCCGCAAGCGGGTGGTGCCCCC 10 48 0 CCCCAACGGG 0.962702 -180 GCCACTCTCCCCCGCAAGCGGGTGGTGCCCCC 10 125 0 CCCCAACGGG 0.962702 -103 GCCACTCTCCCCCGCAAGCGGGTGGTGCCCCC 10 202 0 CCCCAACGGG 0.962702 -26 CGAGGCCTGGCCGCCAACCGCCCTACCGCGTT 12 47 1 CCGCAACGCC 0.635868 -109 TGTCCTCAGACCCCAGAACGGGATTGCCTTTG 12 78 1 CCCAGACGGG 0.921983 -78 CGCCCCAAAACCAACGATTGGGCCACGATGCG 13 41 1 CCACGATGGG 0.474619 -88 AGGCGAAACCCGCGCGGACGAGAACTCTTCCG 17 133 1 CGCCGGCGAG 0.415641 -168 CCGGTCCACCGGGGGCTCCGTAT 18 2 1 CGGCCACGGG 0.91186 -180 CTCCGTATACCCGGAAACCGAGATCCGCTTTC 18 26 1 CCGAAACGAG 0.665023 -156 TTAATTGCTGGCCTCAAACGAGTGAGATGTCC 23 24 0 GCCCAACGAG 0.622915 -122 CATAACCTGTCCGCCACGCGGCCACCACCGCG 23 65 1 CCGCACCGGC 0.867428 -81 TCCACAGTCGCGACCGAAAGGCATGGGACGCC 25 172 0 CGACGAAGGC 0.22208 -129 CGACCGAGGCCCACCGAACGGCGAGCATCGTT 26 31 0 CCACGACGGC 0.920857 -119 ATCCACTCAACCCGCGAGCGACCGAGGCCCAC 26 49 0 CCCCGACGAC 0.921995 -101 CGCGCCCGGGCGCCCAATAGAGCAGTGCGCGG 27 11 1 CGCCAAAGAG 0.308823 -34 GCCAAAGCGCCCGGCCAGCGACT 30 2 0 CCGCCACGAC 0.791673 -66 GGCATTTCCCCCGGCCACCGACTAGTCGTGGG 33 70 0 CCGCCACGAC 0.791674 -231 ATCGTGAAGTCCACCAATCGGGGGACGATCGG 33 120 1 CCACAACGGG 0.946921 -181 TACCACAGGACCCAAAATCGGGAGCACG 38 20 1 CCCAAACGGG 0.912716 -18 CGTGGTCTGCCCCCGACAGGGCGGACGGGCG 42 10 1 CCCCGAAGGG 0.818269 -111 GTCCGCTAGGCCCACAACCTGCTTCAGCAACG 42 81 1 CCCCAACTGC 0.38246 -40 GGCAGATAGCCGGGCAATCGGGCTTGCCCGGT 46 29 1 CGGCAACGGG 0.953204 -98 GCTCGCGCCGCCACCGACAGGGCCGCGCC 51 78 1 CCACGAAGGG 0.540515 -19 AGGTGGCCGCCGCCCGCGCGAGACGGTTGTCG 56 38 1 CGCCGCCGAG 0.667769 -199 CAGCTAGAGCCGGGCAATCGAGCTTAACTTGG 56 114 1 CGGCAACGAG 0.844519 -123 AGTCGGCCCATCGACGAGCGGGGTTGCCGA 56 217 1 TCGCGACGGG 0.487598 -20 AGGATGCCCGCCCGCAAACGACGCCGAAGGTA 59 24 0 CCCCAACGAC 0.913263 -72 CTTGGTCGGCACCGAAATCGGGGCTTGACCAG 59 63 1 ACCAAACGGG 0.154056 -33 TTGACGCCAACCATCATGCGGCACCGGCAATC 60 154 1 CCACATCGGC 0.237758 -140 GCAATCTGAGCCAAACACCGGGTGATCGGCAA 60 180 1 CCAACACGGG 0.581592 -114 TGATCGGCAACCAACCACCGAGCCACAGGACA 60 202 1 CCACCACGAG 0.707266 -92 ACCGCGACCCGGGGCAATCGGGCACAGGCCGG 60 261 1 GGGCAACGGG 0.648849 -33 TTTCTGCAGACCAGCGCCCGGGCACGTCGGCG 63 43 1 CCACGCCGGG 0.817744 -122 CGACGGAGAGCGACCAATTGGCGTTGGTCCGG 67 35 1 CGACAATGGC 0.162731 -266 GTAGCGGCTGCTGGCGACCGGGCTGCTGAAGC 67 97 0 CTGCGACGGG 0.548435 -204 ACGTTCGGAGCCTGCCAGCGGGCCGGATCCGG 67 167 0 CCTCCACGGG 0.535025 -134 TCCGAACGTGCCCCAAATCGGGTTTCATAGCG 67 190 1 CCCAAACGGG 0.912854 -111 TACGACACGCTCAACCGAGATGCGGTGCT 67 282 0 CGCCAACGAG 0.884306 -19 CAATCCTTCCGGGCAGCCGGGCAGGCGGTCC 68 10 1 CGGCAGCGGG 0.626936 -62 CATCCGTACACCCGAGACCGCCACACTCACAA 69 33 0 CCCAGACGCC 0.298308 -268 GGTCAAACCTCGCCCACCCGGCAACCGCTTCA 69 92 0 CGCCACCGGC 0.794439 -209 ACTGTCCCGCGGGCCAATCGAGTTGGAAGGCA 69 232 1 GGGCAACGAG 0.330081 -69 *** *** **** Masking position 10 Map Score: 68.5473 Number of sites scoring better than the average of aligned sites = 9333 Number in coding regions = 8530 Number in noncoding regions = 803 Number of orfs with sites within 600 bp upstream = 576 Fraction of orfs with sites within 600 bp upstream = 0.0925153 Motif number 8 CCGCAATTGGCGCAACGTGCCCCGGAAGCC 1 200 1 CGCAACGTGC 0.932633 -78 GCTGGCGCCACTCATCGCACCATTGTTGCC 2 38 0 CTCATCGCAC 0.753312 -110 CGACGCTTGCCCCAACGTCCAGACCAAAGA 5 236 1 CCCAACGTCC 0.425121 -65 CCAACTCCTTCTCATCGCGCTGCGC 7 6 0 CTCATCGCGC 0.985751 -295 CCAACTCCTTCTCATCGCGCTGCGCGCTCT 7 64 0 CTCATCGCGC 0.985751 -237 AGTGCTATTTCTCATCGCGCTGCGCGCTCT 7 122 0 CTCATCGCGC 0.985751 -179 TCCCGCACTCCTCATCGTGGACCAAAATGC 8 116 0 CTCATCGTGG 0.946389 -41 GACCGTTTCACTCAACGTGCG 12 2 0 CTCAACGTGC 0.9303 -154 GCTATGCCTACGCATCGTGGCCCAATCGTT 13 53 0 CGCATCGTGG 0.948214 -76 GGGTTCTGCCCTCATCGTGTGTCAGCAGGC 17 107 1 CTCATCGTGT 0.663447 -194 GCGGTTTTGCCGCATTGCGCTGGACGGGTC 20 13 1 CGCATTGCGC 0.740504 -21 ATAACCTGTCCGCCACGCGGCCACCACCGC 23 66 1 CGCCACGCGG 0.864259 -80 ACACTATCCACTCAACCCGCGAGCGACCGA 26 56 0 CTCAACCCGC 0.63875 -94 GCCGTCGTGTCGAATCGTGCGTACCCGCAT 29 230 0 CGAATCGTGC 0.571878 -71 GGATTCTCCTCGTGCTTCGATGCGT 37 61 0 CTCCTCGTGC 0.927482 -15 ATTGTCAAATCCCAACGTGGTGTGGCTCAT 53 74 1 CCCAACGTGG 0.770019 -35 TCGGGTGGTACCCATCGCGCCGCGCTGCGG 55 36 1 CCCATCGCGC 0.969547 -167 CACAGCGCGGCTCCTCGCGGTCGGGCCGCC 58 27 1 CTCCTCGCGG 0.937082 -42 ACGTTTTGCGCTCCTCGCGCTGGCGTCGTT 66 86 0 CTCCTCGCGC 0.964692 -165 GACGCAGCACCGCATCTCGGTTGAGCGTGT 67 277 1 CGCATCTCGG 0.620724 -24 AGGTCGCAGCCGCATCGCCGACTTTCGGGC 69 156 0 CGCATCGCCG 0.824851 -145 ********** Masking position 1 Map Score: 29.1566 Number of sites scoring better than the average of aligned sites = 1971 Number in coding regions = 1820 Number in noncoding regions = 151 Number of orfs with sites within 600 bp upstream = 141 Fraction of orfs with sites within 600 bp upstream = 0.022647 Motif number 9 AGCCGACTAGGGAACACTCTGCGTGGTGCGCC 1 57 1 GGAACTCTGC 0.503205 -221 CGGAAGCCGCGCTACATTTGGCTCCTAGCCAC 1 222 1 GCTACTTGGC 0.445518 -56 AATTGTGATCGCGAATTTCTGAGTCCGGAACG 7 199 0 GCGAATCTGA 0.542702 -102 GCGCGGCAAGGCCAAAATCGGACAAGTCACAC 9 116 0 GCCAATCGGA 0.686436 -58 CCACCTCATCGCTACGCTCTGCATCGTCGTCG 10 18 0 GCTACTCTGC 0.902894 -210 CCACCTCATCGCTACGCTCTGCATCGTCGTCG 10 95 0 GCTACTCTGC 0.902894 -133 CCACCTCATCGCTACGCTCTGCATCGTCGTCG 10 172 0 GCTACTCTGC 0.902894 -56 CCCTACCGTCGGAGCCGCACACC 11 44 0 CCTACTCGGA 0.592866 -13 ACTTCGACCTGCTAAAGTCGGCGCG 21 96 1 GCTAATCGGC 0.902871 -15 CGGATTCTAGGCGAATGACGGCTCTTTCGCAC 25 17 0 GCGAAACGGC 0.666773 -284 GTCAGGTCCAGCTACTCCCGGCACACTATCCA 26 76 0 GCTACCCGGC 0.956137 -74 TGCGGCTGCCGCGAAATCCGGCATTTCTACCA 29 188 1 GCGAACCGGC 0.920476 -113 CACCAATCGGGGGACGATCGGCCCGCGGTGCC 33 131 1 GGGACTCGGC 0.939212 -170 CGGGGACATGGCGAACAGCGGCGGCTCGCATG 35 49 1 GCGAAGCGGC 0.755745 -41 GTCCGCTAGGCCCACAACCTGCTTCAGCAACG 42 81 1 CCCACCCTGC 0.601367 -40 ACCTGCTTCAGCAACGACCGGACGCCATCAGA 42 97 1 GCAACCCGGA 0.627158 -24 CCGCCGTCACGGCAATGTCGGCCAG 44 4 0 GGCAATCGGC 0.755521 -83 AGCAACATCCTGCCATCAGAAAG 47 2 1 GCAACCCTGC 0.697375 -193 CTGTGTGAAGGCTACCGTCGGACACTATGGAC 48 119 1 GCTACTCGGA 0.871583 -182 GAATACAACGGCGACAACCGTCTCGCGCGGGC 56 49 0 GCGACCCGTC 0.500295 -188 GAAAAGCCAGCCTAACCCCGGATCCACACACG 56 183 0 CCTAACCGGA 0.270158 -54 TGCTTACCCCGATACCTTCGGCGTCGTTTGCG 59 12 1 GATACTCGGC 0.516893 -84 TGTCGCGTATGGCAATGTCTGCTGTGCCGGTT 61 49 1 GGCAATCTGC 0.50438 -114 TGGTCGACTGCCGACTTGCGGCCCCGTGTGGA 66 187 1 CCGACGCGGC 0.668509 -64 CCCGATTTGGGGCACGTTCGGAGCCTGCCAGC 67 180 0 GGCACTCGGA 0.692868 -121 TTGTGTTTGTGGGACCGCCTGCCCGGCTGCCC 68 21 0 GGGACCCTGC 0.797058 -51 GAACAGTCGCCCGAAAGTCGGCGATGCGGCTG 69 148 1 CCGAATCGGC 0.762866 -153 ATTGGCCCGCGGGACAGTCGGAGGTGGTTTTC 69 218 0 GGGACTCGGA 0.787853 -83 TCACCATCCGGCCACTCACTGCCTTCCAACTC 69 251 0 GCCACACTGC 0.548632 -50 ***** ***** Masking position 4 Map Score: 25.1813 Number of sites scoring better than the average of aligned sites = 8673 Number in coding regions = 8046 Number in noncoding regions = 627 Number of orfs with sites within 600 bp upstream = 473 Fraction of orfs with sites within 600 bp upstream = 0.0759717 Motif number 10 CGCTGCGCGCTCTGCATCGTCGTCGGGCTC 7 47 0 TCTGCATCGT 0.987449 -254 CGCTGCGCGCTCTGCATCGTCGTCGGGCTC 7 105 0 TCTGCATCGT 0.987449 -196 CAGGTGTTTGTCGGCTTCGTTGCC 7 287 1 TCGGCTTCGT 0.850431 -14 GCCGAGGTGGTCGGCACCGTAACGGCCGGT 8 47 0 TCGGCACCGT 0.939413 -110 ATCGCTACGCTCTGCATCGTCGTCGGCGCA 10 13 0 TCTGCATCGT 0.987449 -215 ATCGCTACGCTCTGCATCGTCGTCGGCGCA 10 90 0 TCTGCATCGT 0.987449 -138 ATCGCTACGCTCTGCATCGTCGTCGGCGCA 10 167 0 TCTGCATCGT 0.987449 -61 TGTGCATCGTCTCCCGGCGG 13 1 1 TGTGCATCGT 0.977989 -128 CAGCTATGCCTACGCATCGTGGCCCAATCG 13 55 0 TACGCATCGT 0.589063 -74 CACCGAACGGCGAGCATCGTTGCCGGGATA 26 22 0 CGAGCATCGT 0.725524 -128 TGCGAATGGCTGGGCACCGTTGTGGTGTCC 31 19 1 TGGGCACCGT 0.897525 -120 GTCTGCATCGTGGCGTACCGG 35 2 1 TCTGCATCGT 0.987449 -88 CGCTGCGCGGCGTGCATCGTCGCCGAGCTG 55 114 1 CGTGCATCGT 0.949458 -89 CGCTGCGCGGCGTGCATCGTCGCCGAGCTA 55 172 1 CGTGCATCGT 0.949458 -31 CCCGATACCTTCGGCGTCGTTTGCGGGCGG 59 19 1 TCGGCGTCGT 0.893911 -77 ********** Masking position 10 Map Score: 26.87 Number of sites scoring better than the average of aligned sites = 219 Number in coding regions = 160 Number in noncoding regions = 59 Number of orfs with sites within 600 bp upstream = 43 Fraction of orfs with sites within 600 bp upstream = 0.00690652 Motif number 11 GTGTTGGACAGCCGAATCCCCGCAATTGGC 1 181 1 GCCGAATCCC 0.938047 -97 CACTCTCAGACCCCGCTCCCGGGACTCCCG 3 50 0 CCCCGCTCCC 0.379917 -80 AGTCCTCCCTGGAGGAGCCGACGCTTGCCC 5 218 1 GGAGGAGCCG 0.577553 -83 ACCATCAGCCGCCGAAACCGCCGGCAGGTG 9 24 0 GCCGAAACCG 0.839721 -150 CCCTACCGTCGGAGCCGCACACCGTCA 11 40 0 GTCGGAGCCG 0.735714 -17 TTTGGTGAGCGTCGGGACCGTCGTGACCTC 12 106 1 GTCGGGACCG 0.563156 -50 GAGGATCTCGGGCCGATCCG 13 119 1 GGCCGATCCG 0.906697 -10 AGGGTGAGCCGCCGGGTCGCGTGCTGGGCG 15 82 0 GCCGGGTCGC 0.541625 -49 CCGTTTATTCGGACGATCCCTGCCGTTCCA 17 17 1 GGACGATCCC 0.662805 -284 CTGGGCGCAGGCACAAACCGCACCAACATT 17 50 1 GCACAAACCG 0.295496 -251 ACACGATGAGGGCAGAACCCCAGGTGCAGT 17 97 0 GGCAGAACCC 0.605693 -204 TGTGTCAGCAGGCGAAACCCGCGCGGACGA 17 124 1 GGCGAAACCC 0.85807 -177 CTTTCTCACCGCCGAAGCCCGACATCCCGC 18 53 1 GCCGAAGCCC 0.925322 -129 GTGTGATCCAGCACAATCCCGTCATCGTTG 19 47 0 GCACAATCCC 0.547957 -21 AGCGCAATGCGGCAAAACCGCCG 20 4 0 GGCAAAACCG 0.268854 -30 AACGCTAACCGGCCAAGCCTCCACAGTCGC 25 193 0 GGCCAAGCCT 0.363385 -108 GATATGGCCCGCCCAGACCCCGCGGCCGG 28 33 1 GCCCAGACCC 0.796572 -19 CCGTTGTGGTGTCCGGTCCCGTACCGTACT 31 35 1 GTCCGGTCCC 0.717708 -104 CTGTTGAATCCGCGGATCCCCGCCTGAGGT 31 63 1 CGCGGATCCC 0.840394 -76 GTGCCACGCCGCCCTATCCCAATGG 32 6 0 GCCCTATCCC 0.425038 -29 TACCAGCGGAGTCCAAACCCGCCAAAGATA 33 39 0 GTCCAAACCC 0.496357 -262 CGGGGGAAATGCCGAATCCCGCATCCGGTG 33 89 1 GCCGAATCCC 0.938047 -212 GGCGCGGCACCGCGAGTCCGGGGACATGGC 35 31 1 CGCGAGTCCG 0.444652 -59 TGCCCGATCCTGCCACGGACA 35 79 0 GCCCGATCCT 0.716316 -11 GAATTTGACGCCCGAGACCCGC 36 59 1 CCCGAGACCC 0.551681 -12 TCTGTCAGTGGCCGGAGCGCCGCGACCTGG 40 17 1 GCCGGAGCGC 0.603529 -69 ACTCGGAGCAGCCCGAACTCGACCCCGCGC 42 53 0 GCCCGAACTC 0.217312 -68 GCGCGCGTCTGCCCGATCCCTCGAAGGGA 43 10 0 GCCCGATCCC 0.961589 -172 CAATAGGAGACCCAGGTCCCGATCGCTACC 43 74 0 CCCAGGTCCC 0.343864 -108 GCGTCGATGCGCCGAGGCCGAAGGCTCGCG 46 86 0 GCCGAGGCCG 0.820308 -41 GCGCCGCCAGGGCGGCTCCCAGTGTCCCGC 47 134 0 GGCGGCTCCC 0.73698 -61 AAGTAGCCCGCTCGGATCCCTGTGAGCCCC 52 64 1 CTCGGATCCC 0.557089 -41 CTGCTCTATTGTCAAATCCCAACGTGGTGT 53 67 1 GTCAAATCCC 0.20246 -42 AGCGGCGTGAGGAGGAGCCGAGCAGTCAAG 55 88 0 GGAGGAGCCG 0.577553 -115 AGCGGCGTGAGGAGGAGCCGAGCAGTCCAA 55 146 0 GGAGGAGCCG 0.577553 -57 CCAGCCTAACCCCGGATCCACACACGATCC 56 179 0 CCCGGATCCA 0.194318 -58 CGAGGTCATTGCCCGAGCCTAGCGCTGCGC 57 11 1 GCCCGAGCCT 0.673881 -49 AATTCATGCCGGCCGATCCGCACTCTATTG 60 127 1 GGCCGATCCG 0.906697 -167 GTGTCGGCTCGCCGAGGCCCAAAACAGCAC 61 109 0 GCCGAGGCCC 0.887272 -54 GCGCTGGTCTGCAGAAACCCGGCTCGCCTT 63 30 0 GCAGAAACCC 0.514501 -135 CCACCGCAGCGGCGGGTCCGACGCCG 65 7 0 GGCGGGTCCG 0.900457 -43 AAGCTCTGGCGGCCGAGCCTCCTCCAAACG 66 146 1 GGCCGAGCCT 0.580359 -105 GCCGGATCCGGGCGGTACCCCACTCACGTC 67 148 0 GGCGGTACCC 0.379986 -153 CTGCCAGCGGGCCGGATCCGGGCGGTACCC 67 158 0 GCCGGATCCG 0.955111 -143 CATCCGTACACCCGAGACCGCCACACTCAC 69 35 0 CCCGAGACCG 0.416471 -266 CTGCTGGCCGGCGCGGTCCCTGGACTAATC 69 187 0 GCGCGGTCCC 0.331336 -114 ********** Masking position 8 Map Score: 37.4674 Number of sites scoring better than the average of aligned sites = 18374 Number in coding regions = 17335 Number in noncoding regions = 1039 Number of orfs with sites within 600 bp upstream = 702 Fraction of orfs with sites within 600 bp upstream = 0.112753 Motif number 12 CTGGCGCCACTCATCGCACCATTGTTGCCT 2 37 0 TCATCGCACC 0.596823 -111 ATCGTGACGCTAGCGCGCTAG 3 2 1 TCGTGACGCT 0.567358 -128 GGTCTGAGAGTGGGCGCGCCTGCCCTTACC 3 68 1 TGGGCGCGCC 0.771299 -62 CCTGCCCTTACCGTCACACCTGATCCGGAT 3 86 1 CCGTCACACC 0.459562 -44 TCCAGCCGATCGGCCGCGCTGGCCAACAGC 5 42 1 CGGCCGCGCT 0.847653 -259 CAACTCCTTCTCATCGCGCTGCGC 7 5 0 TCATCGCGCT 0.919516 -296 CTCTGCATCGTCGTCGGGCTCGACCTAACC 7 38 0 TCGTCGGGCT 0.82197 -263 CAACTCCTTCTCATCGCGCTGCGCGCTCTG 7 63 0 TCATCGCGCT 0.919516 -238 CTCTGCATCGTCGTCGGGCTCGACCTAACC 7 96 0 TCGTCGGGCT 0.82197 -205 GTGCTATTTCTCATCGCGCTGCGCGCTCTG 7 121 0 TCATCGCGCT 0.919516 -180 GGTGATGGGCTGGTGGCGCTCACCCCGTTC 7 174 1 TGGTGGCGCT 0.816221 -127 CTCGGCGGTATGAACGCGCTGCGCAGCGGA 8 71 1 TGAACGCGCT 0.576141 -86 TTGGGGCGGCTCGCCGCGCCGCCGGGAGAC 13 19 0 TCGCCGCGCC 0.950995 -110 TCCTCCTGAGTCGTCGGGCCGGG 22 4 0 TCGTCGGGCC 0.907295 -23 CACGCGGCCACCACCGCGCCGATCACAGCC 23 79 1 CCACCGCGCC 0.857575 -67 CCATGCCTTTCGGTCGCGACTGTGGAGGCT 25 178 1 CGGTCGCGAC 0.736544 -123 GGACATGAAACGATGGCGCTGAAAAAGGGG 26 109 1 CGATGGCGCT 0.579483 -41 GGCGGGACTATGGTCGCGACCACTACGCAC 29 59 1 TGGTCGCGAC 0.737861 -242 AAGGCCTTCGTCGTCGCGCTCGATGTGGTG 29 134 0 TCGTCGCGCT 0.973385 -167 GTACGGGGCGTGGTCGCGCCCCGGGCAATA 31 91 1 TGGTCGCGCC 0.979355 -48 CCTTTCCAGGTCGCGGCGCTCCGGCCACTG 40 22 0 TCGCGGCGCT 0.645 -64 CGGGCTTGCCCGGTGACGCTACACTTAGCC 46 47 1 CGGTGACGCT 0.443517 -80 AATGACGCCGTGATCACGCCGTTCAACGTC 47 56 0 TGATCACGCC 0.72807 -139 GGTCATCTAGCGGAGGCGCCGCCAGGGCGG 47 149 0 CGGAGGCGCC 0.645151 -46 TTTCGCAGTGCCGTCACGCTCGCGGATCAA 48 61 1 CCGTCACGCT 0.867777 -240 TAGTCAGGCACCAACGCGCCGACCAATTAC 48 178 0 CCAACGCGCC 0.823848 -123 CAAGCGAGCACCAACGCGACCCTCGTGCAG 48 211 1 CCAACGCGAC 0.217228 -90 ATTTTGCGTCTGCTCGCGCCGCCACCGACA 51 67 1 TGCTCGCGCC 0.899571 -30 CGGGTGGTACCCATCGCGCCGCGCTGCGGT 55 37 1 CCATCGCGCC 0.960086 -166 GCTCGGCTCCTCCTCACGCCGCTGCGCGGC 55 95 1 TCCTCACGCC 0.725637 -108 GCTCGGCTCCTCCTCACGCCGCTGCGCGGC 55 153 1 TCCTCACGCC 0.725637 -50 CTTTCGTCCCGCCAGTCACAGCG 58 4 1 TCGTCCCGCC 0.76595 -65 CGGCTCCTCGCGGTCGGGCCGCCGATCACC 58 34 1 CGGTCGGGCC 0.856075 -35 CCTCGGCGAGCCGACACGCCTCGGCGTTCT 61 122 1 CCGACACGCC 0.730091 -41 TCGCCGCGCCCGTCGCACCAAGGCGAGCC 63 10 1 CCGTCGCACC 0.824762 -155 CGTTTTGCGCTCCTCGCGCTGGCGTCGTTT 66 85 0 TCCTCGCGCT 0.87351 -166 CAACGCCAATTGGTCGCTCTCCGTCGCCGT 67 31 0 TGGTCGCTCT 0.351226 -270 ********** Masking position 9 Map Score: 50.155 Number of sites scoring better than the average of aligned sites = 10316 Number in coding regions = 9436 Number in noncoding regions = 880 Number of orfs with sites within 600 bp upstream = 620 Fraction of orfs with sites within 600 bp upstream = 0.0995824 Motif number 13 GTCATCTGGGTGAGGTCGACCGCAGGCTGATC 5 12 1 TGAGTCGACG 0.636279 -289 TGTTGGCCAGCGCGGCCGATCGGCTGGATCAG 5 38 0 CGCGCCGACG 0.928101 -263 CTGACATCTACGAACTCGACCGACAACCGACC 5 127 1 CGACTCGACG 0.924118 -174 AGCCCGACGACGATGCAGAGCGCGCAGCGCGA 7 48 1 CGAGCAGACG 0.980178 -253 AGCCCGACGACGATGCAGAGCGCGCAGCGCGA 7 106 1 CGAGCAGACG 0.980178 -195 CGCGCTAGGGCGACGTTCACCGGATTTGTAGG 9 143 1 CGAGTTCACG 0.573594 -31 GCGCCGACGACGATGCAGAGCGTAGCGATGAG 10 14 1 CGAGCAGACG 0.980178 -214 GCGCCGACGACGATGCAGAGCGTAGCGATGAG 10 91 1 CGAGCAGACG 0.980178 -137 GCGCCGACGACGATGCAGAGCGTAGCGATGAG 10 168 1 CGAGCAGACG 0.980178 -60 ACCGTCACAGCGAGGTAGACAGATCAGGAGAA 11 15 0 CGAGTAGAAG 0.465019 -42 TCGTGACCTCCGAGGACGTGCGTTCATTAGAG 12 126 1 CGAGACGTCG 0.58437 -30 GCCTTGTGCTCAAACTCGACCGGC 19 3 0 CAACTCGACG 0.321146 -65 CGCGAGCGACCGAGGCCCACCGAACGGCGAGC 26 37 0 CGAGCCCACG 0.975681 -113 ACATCGAGCGCGACGACGAAGGCCTTGCCTAC 29 138 1 CGAGACGAGG 0.783306 -163 CGGAGCAGCCCGAACTCGACCCCGCGCAGGTG 42 48 0 CGACTCGACC 0.412162 -73 GTCGATGCGCCGAGGCCGAAGGCTCGCGCTGG 46 82 0 CGAGCCGAGG 0.959188 -45 CTAGCCCAAGCGAGCACCAACGCGACCCTCGT 48 205 1 CGACACCACG 0.625772 -96 CCTGCGGGGCTGACCGACGGCGGCTA 52 5 1 CGGGCTGACG 0.581493 -100 AGCTCGGCGACGATGCACGCCGCGCAGCGGCG 55 111 0 CGAGCACGCG 0.732515 -92 AGCTCGGCGACGATGCACGCCGCGCAGCGGCG 55 169 0 CGAGCACGCG 0.732515 -34 GATCCACACACGATCCCGATCGGACTGTTCGA 56 163 0 CGACCCGACG 0.929615 -74 CGCCCGCAAACGACGCCGAAGGTATCGGGGTA 59 16 0 CGAGCCGAGG 0.959187 -80 ATGTCGTCATCGAGGTCGATCGTAGTGCGCAT 66 40 0 CGAGTCGACG 0.97461 -211 TCCACAACGGCGACGGAGAGCGACCAATTGGC 67 25 1 CGAGGAGACG 0.811884 -276 *** ***** ** Masking position 2 Map Score: 34.5443 Number of sites scoring better than the average of aligned sites = 3091 Number in coding regions = 2853 Number in noncoding regions = 238 Number of orfs with sites within 600 bp upstream = 194 Fraction of orfs with sites within 600 bp upstream = 0.0311597 Motif number 14 GGGCGACTCCGATGAGCTGGCGCCACTCAT 2 53 0 GATGAGCTGG 0.839463 -95 AGTCATCTGGGTGAGGTCGACCGCAGGCT 5 10 1 GGTGAGGTCG 0.470477 -291 CAGCCGATCGGCCGCGCTGGCCAACAGCGA 5 44 1 GCCGCGCTGG 0.885637 -257 GTCAGGCCCAGCTGATCCGGTCACTACATG 5 102 0 GCTGATCCGG 0.592142 -199 CGTTCATACCGCCGAGGTGGTCGGCACCGT 8 57 0 GCCGAGGTGG 0.916587 -100 AGAGCGTAGCGATGAGGTGGGGGCACCACC 10 30 1 GATGAGGTGG 0.858897 -198 AGAGCGTAGCGATGAGGTGGGGGCACCACC 10 107 1 GATGAGGTGG 0.858897 -121 AGAGCGTAGCGATGAGGTGGGGGCACCACC 10 184 1 GATGAGGTGG 0.858897 -44 CGTAGGCATAGCTGAGGTGGCGTCGCGGCC 13 71 1 GCTGAGGTGG 0.98163 -58 AACGGTCCAAGCTGATTTGGCGATTCCTGG 14 50 1 GCTGATTTGG 0.549834 -92 GGCCAATGTGGCTGATGTGGCTAAACCTCG 17 218 1 GCTGATGTGG 0.895214 -83 TGTGATCGGCGCGGTGGTGGCCGCGTGGCG 23 76 0 GCGGTGGTGG 0.882957 -70 AGTTCTAGCGGCTGTGATCGGCGCGGTGGT 23 88 0 GCTGTGATCG 0.49487 -58 CGTGATCGCCGCTGTGCTCGTCCTTCAACA 29 264 0 GCTGTGCTCG 0.937004 -37 AGAACCGTTGTGGTGGTACAGGTCCG 30 52 0 GTTGTGGTGG 0.765391 -16 CGCAGGTGCAGCTGCGCCCGTCCGCCCTGT 42 26 0 GCTGCGCCCG 0.707093 -95 GTCGTGTCGGGCTGCGCGCGTCTGCCCGAT 43 23 0 GCTGCGCGCG 0.473834 -159 GGATTTGACTGCTGAGCTGTGTGAAGGCTA 48 103 1 GCTGAGCTGT 0.566621 -198 TCGTGCAGCAGCTGAGCTGGCGAGGGTTTT 48 233 1 GCTGAGCTGG 0.97868 -68 ATCGCGCCGCGCTGCGGTGCGGGTCATCGT 55 49 1 GCTGCGGTGC 0.649204 -154 TCATCGTCAAGCTGTGCTTGACTGCTCGGC 55 72 1 GCTGTGCTTG 0.624198 -131 TCGTCGCCGAGCTGTGTTGGACTGCTCGGC 55 130 1 GCTGTGTTGG 0.884255 -73 CGAGCCTAGCGCTGCGCTCGCCAACACGAC 57 24 1 GCTGCGCTCG 0.92426 -36 GCCCCGGGTCGCGGTGCTGGGCTGCAGCCG 60 246 0 GCGGTGCTGG 0.866321 -48 GTTGATGACGGCTGTTGTCGCGTATGGCAA 61 34 1 GCTGTTGTCG 0.734619 -129 GGCAATGTCTGCTGTGCCGGTTTGGTCTTC 61 59 1 GCTGTGCCGG 0.900804 -104 GCAAGGTTGTGCTGTTTTGGGCCTCGGCGA 61 101 1 GCTGTTTTGG 0.549834 -62 CGGACCCGCCGCTGCGGTGGACCATCATGG 65 17 1 GCTGCGGTGG 0.977699 -33 GCTCTCCGTCGCCGTTGTGGAAGTCGCCGA 67 16 0 GCCGTTGTGG 0.637264 -285 GTTTTGCGTTGTGGTGGGTTCTTTGTG 69 8 1 GTTGTGGTGG 0.765391 -293 ********** Masking position 4 Map Score: 38.9685 Number of sites scoring better than the average of aligned sites = 4335 Number in coding regions = 4069 Number in noncoding regions = 266 Number of orfs with sites within 600 bp upstream = 211 Fraction of orfs with sites within 600 bp upstream = 0.0338901 Motif number 15 ACCATTGTTGCCTGCGCCGTTGGGCGGGATG 2 19 0 CCTCGCCGTT 0.310225 -129 CCTTGACCTCCCTTCGCCGGCATGATCCGGA 3 109 0 CCTCGCCGGC 0.952701 -21 TCGCTGTTGGCCAGCGCGGCCGATCGGCTGG 5 43 0 CCACGCGGCC 0.775919 -258 AACAGCGACTCCGTCGATGACGTGCAGCAAA 5 66 1 CCGCGATGAC 0.188438 -235 CGCCACCAGCCCATCACCGGCGGGCGTCTTG 7 161 0 CCACACCGGC 0.485755 -140 CCTGCGCCGACGACGATGCAG 10 1 1 CCTCGCCGAC 0.984323 -227 GCGCTGATGACCTGCGCCGACGACGATGCAG 10 78 1 CCTCGCCGAC 0.984323 -150 GCGCTGATGACCTGCGCCGACGACGATGCAG 10 155 1 CCTCGCCGAC 0.984323 -73 GTGACGGTGTGCGGCTCCGACGGTAGGG 11 39 1 GCGCTCCGAC 0.527908 -18 TTGAGTGAAACGGTCGCCGACCTCATGCGAC 12 17 1 CGGCGCCGAC 0.521653 -139 ACCGTCGTGACCTCCGAGGACGTGCGTTCAT 12 122 1 CCTCGAGGAC 0.572259 -34 GGGGCGGCTCGCCGCGCCGCCGGGAGACGAT 13 16 0 GCCCGCCGCC 0.882373 -113 GTCGCGGCCCTCACCGGCGACACCACAGAGG 13 92 1 TCACGGCGAC 0.389355 -37 GCAGGCGAAACCCGCGCGGACGAGAACTCTT 17 131 1 CCCCGCGGAC 0.86863 -170 AGTCTCAGGCGCTGCGACGACACTG 17 286 1 GCTCGACGAC 0.792536 -15 TGGCTTAAGGCCCGCGCCGTCAATTACAACG 21 14 1 CCCCGCCGTC 0.933805 -97 CCGCTAGCACCCCGGGCCGACCCTGTGTGTT 25 250 0 CCCGGCCGAC 0.753186 -51 TTCTCATTCTCCTCCGCCCCCCTTTTTCAGC 26 126 0 CCTCGCCCCC 0.457612 -24 GTAGGCAAGGCCTTCGTCGTCGCGCTCGATG 29 139 0 CCTCGTCGTC 0.372089 -162 GAAGGCCTTGCCTACGACGACCTCAAGTTTT 29 155 1 CCTCGACGAC 0.906012 -146 CCAGCCATTCGCACCGCTGAC 31 1 0 GCACGCTGAC 0.538505 -138 GGTCAATGGTGCCACGCCGCCCTATCCCAAT 32 13 0 GCCCGCCGCC 0.882384 -22 TCGAGTTCGGGCTGCTCCGAGTCCGCTAGGC 42 61 1 GCTCTCCGAG 0.125612 -60 GATGAACCAATCACCGCCGTCACGGCAATGT 44 18 0 TCACGCCGTC 0.531628 -69 CGGCCTCGGCGCATCGACGCCCGGATAATCC 46 96 1 GCACGACGCC 0.602857 -31 ATCGTTGGTAGCTACGCCGGCTGCTGCGTGC 47 101 1 GCTCGCCGGC 0.888668 -94 TCTGCTCGCGCCGCCACCGACAGGGCCGCGC 51 75 1 CCGCACCGAC 0.601966 -22 ACCACCCGAGCCCCCGCCGTCTAAGCTTTCC 55 14 0 CCCCGCCGTC 0.933805 -189 CGGGCGGCGGCCACCTCGGACCCTGTATCGG 56 23 0 CCACTCGGAC 0.432616 -214 AGCGGTGAATACAACGGCGACAACCGTCTCG 56 56 0 ACACGGCGAC 0.389355 -181 CTTAGTCGGCCCATCGACGAGCGGGGTTGCC 56 214 1 CCACGACGAG 0.388775 -23 TACCCCGATACCTTCGGCGTCGTTTGCGGGC 59 16 1 CCTCGGCGTC 0.755646 -80 TCGGTGCCGACCAAGGCCGGCTAGGATGCCC 59 47 0 CCAGGCCGGC 0.563354 -49 GGCGACTTCCACAACGGCGACGGAGAGCGAC 67 18 1 ACACGGCGAC 0.389355 -283 GGTCGCAGCCGCATCGCCGACTTTCGGGCGA 69 154 0 GCACGCCGAC 0.961363 -147 GCAGCGAAAACCACCTCCGACTGTCCCGCGG 69 213 1 CCACTCCGAC 0.846007 -88 *** ******* Masking position 9 Map Score: 41.7233 Number of sites scoring better than the average of aligned sites = 14745 Number in coding regions = 14112 Number in noncoding regions = 633 Number of orfs with sites within 600 bp upstream = 483 Fraction of orfs with sites within 600 bp upstream = 0.0775779