AlignACE version 2.2 July 7, 1998 alignACE -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -ifruR_mtub_opreg_100.orf -g0.656 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.656 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 fba 95 fba #2 aceA 274 aceA #3 ppdK 212 ppdK #4 gap 300 gap #5 pykA 107 pykA #6 pfkA 95 pfkA #7 gatC 84 gatC Motif number 1 TGTGCGTGATGGCCGGTATGTTGGGACGTC 1 11 0 GGCCGGTATG 0.964685 -85 CGAGCTTGTCGGCCTGTGCGTGATGGCCGG 1 25 0 GGCCTGTGCG 0.826073 -71 AGCTCGGTTGCGGTGTTGCGATACTGGGTG 1 49 1 CGGTGTTGCG 0.706867 -47 TGTCGTTACTGGCGGGTAGCTTCTGAAACG 2 53 1 GGCGGGTAGC 0.952824 -222 AAAGTCCGCAGGCCGTTGCCGAAATTCGCA 2 117 1 GGCCGTTGCC 0.970681 -158 GGCGCAGCTTCACTGGTGTGCTAACTCGAC 2 186 0 CACTGGTGTG 0.56214 -89 AGTGAAGCTGCGCCGTTGACACCGCCTGGA 2 202 1 CGCCGTTGAC 0.759795 -73 GACGACGGTAGGGCGTCAGCGTTTTCGGCA 2 230 1 GGGCGTCAGC 0.922194 -45 GGCTTGGTTCGACCGGCTCCCCCGCCTAAC 3 12 0 GACCGGCTCC 0.935059 -201 CAAGCCGTTGGGCCGGTGCGCTGTCCACGC 3 36 1 GGCCGGTGCG 0.99535 -177 CGGTGATGGTGGCTGGCGGCGTGGACAGCG 3 54 0 GGCTGGCGGC 0.976528 -159 TGCGAGACAACGCCGGCTGCCGGTGATGGT 3 74 0 CGCCGGCTGC 0.989704 -139 GCGCCTTGGTCAGCGGTCGGACTACTCAGC 3 133 0 CAGCGGTCGG 0.847802 -80 GTGGGCCCACAGGGGGCGCCTTGGTCAGCG 3 148 0 AGGGGGCGCC 0.811623 -65 GGCCCACAGTGGGCGGTCTGGCGTTGCCCA 3 171 1 GGGCGGTCTG 0.923215 -42 TTTGGAAACGGCCCGGTGCGGCGGGGCTCA 4 71 0 GCCCGGTGCG 0.981345 -230 TGGCTTGTGACACCGTTGTGACGTCACCAT 4 100 0 CACCGTTGTG 0.667928 -201 GCGGACATTGCGCTGGCTTGTGACACCGTT 4 113 0 CGCTGGCTTG 0.827423 -188 AGCGCAATGTCCGCGGTAGGGACGCGGCGG 4 129 1 CCGCGGTAGG 0.907427 -172 GGTAGGGACGCGGCGGCTGGGATCGGTGGG 4 143 1 CGGCGGCTGG 0.983841 -158 TGGGGTGAGCGCCCGGCTTCTCAAAGCGAG 4 169 1 GCCCGGCTTC 0.886724 -132 GGTAAGAGTCCCGGGGCTCCCCTCGCTTTG 4 190 0 CCGGGGCTCC 0.739113 -111 CGCCGCCTTCGGCCGGTAAGAGTCCCGGGG 4 204 0 GGCCGGTAAG 0.896182 -97 TACCGGCCGAAGGCGGCGGGTGTCACTGAT 4 216 1 AGGCGGCGGG 0.957901 -85 AACAACCACTGGCCGTCAGCCTAGATCAGT 4 240 0 GGCCGTCAGC 0.960773 -61 CCAACCAGACCGCGGGTAGGCGCGG 5 6 0 CGCGGGTAGG 0.959231 -102 TCAACACCACCGCGGGCAGCCCAGCCAACC 5 30 0 CGCGGGCAGC 0.968487 -78 CGGTGGTGTTGACCGGTGTGCCGACCCGGC 5 48 1 GACCGGTGTG 0.917793 -60 GGCCGGCACCGCCGGGTCGGCACACCGGTC 5 58 0 GCCGGGTCGG 0.855239 -50 ACGGCGGTAGGGCCGGCACCGCCGGGTCGG 5 68 0 GGCCGGCACC 0.990572 -40 CCGGCCCTACCGCCGTCGCGACTATGCTGA 5 82 1 CGCCGTCGCG 0.985032 -26 TCGCACGGGCGAGGGGCGCCGGATGCGAGT 6 27 0 GAGGGGCGCC 0.855449 -69 GCGGCCGCCGACCTGGCGCGAGCAGACACA 6 60 0 ACCTGGCGCG 0.564503 -36 CGCGCCAGGTCGGCGGCCGCGCGGCAAGAT 6 70 1 CGGCGGCCGC 0.979338 -26 GATGTATCCACGGCGTTTCGGCAGCCGGCG 7 31 1 CGGCGTTTCG 0.862225 -54 GGACGGCCGACGCCGGCTGCCGAAACGCCG 7 41 0 CGCCGGCTGC 0.989704 -44 AGCCGGCGTCGGCCGTCCGGCCACCCATTA 7 53 1 GGCCGTCCGG 0.966837 -32 ********** Masking position 5 Map Score: 65.2092 Number of sites scoring better than the average of aligned sites = 94412 Number in coding regions = 88711 Number in noncoding regions = 5701 Number of orfs with sites within 600 bp upstream = 1597 Fraction of orfs with sites within 600 bp upstream = 0.256505 Motif number 2 GCTCGGTTGCGGTGTTGCGATACTGGGTGG 1 50 1 GGTGTTGCGA 0.781022 -46 TGGGTGGATCGGAGTCGTCAGGAGGAACGT 1 73 1 GGAGTCGTCA 0.793577 -23 AAGTCCGCAGGCCGTTGCCGAAATTCGCAA 2 118 1 GCCGTTGCCG 0.896876 -157 TGGGTGGACCAGCGTTGACACGCTGTGCCA 2 154 1 AGCGTTGACA 0.852504 -121 GTGAAGCTGCGCCGTTGACACCGCCTGGAC 2 203 1 GCCGTTGACA 0.966569 -72 CTGACGCCCTACCGTCGTCCAGGCGGTGTC 2 219 0 ACCGTCGTCC 0.942464 -56 AGACCGTTAAGGAGTTGTCT 2 265 1 GGAGTTGTCT 0.49609 -10 GTCGAACCAAGCCGTTGGGCCGGTGCGCTG 3 29 1 GCCGTTGGGC 0.986284 -184 GGTGGCTGGCGGCGTGGACAGCGCACCGGC 3 47 0 GGCGTGGACA 0.949815 -166 ACCGGCAGCCGGCGTTGTCTCGCAGCATGG 3 80 1 GGCGTTGTCT 0.918418 -133 GCTTGTGTCTGGTGTTGGGCCTTACCCATG 3 105 0 GGTGTTGGGC 0.952953 -108 CACAGGGGGCGCCTTGGTCAGCGGTCGGAC 3 141 0 GCCTTGGTCA 0.549022 -72 CAGACCGCCCACTGTGGGCCCACAGGGGGC 3 161 0 ACTGTGGGCC 0.826293 -52 TGGGCGGTCTGGCGTTGCCCATAAGTAGCA 3 180 1 GGCGTTGCCC 0.991276 -33 GGCTTGTGACACCGTTGTGACGTCACCATT 4 99 0 ACCGTTGTGA 0.664752 -202 GACACCCGCCGCCTTCGGCCGGTAAGAGTC 4 210 0 GCCTTCGGCC 0.936068 -91 ACAACCACTGGCCGTCAGCCTAGATCAGTG 4 239 0 GCCGTCAGCC 0.888208 -62 TGCCCGCGGTGGTGTTGACCGGTGTGCCGA 5 42 1 GGTGTTGACC 0.954714 -66 CCGACCCGGCGGTGCCGGCCCTACCGCCGT 5 68 1 GGTGCCGGCC 0.915465 -40 CGGCCCTACCGCCGTCGCGACTATGCTGAG 5 83 1 GCCGTCGCGA 0.932204 -25 GAATCGCACGGGCGAGGGGCGCCGGATGCG 6 30 0 GGCGAGGGGC 0.741443 -66 TTGCCGCGCGGCCGCCGACCTGGCGCGAGC 6 67 0 GCCGCCGACC 0.931629 -29 GTTGTGCCACAGTGTTGGCC 7 1 0 AGTGTTGGCC 0.909881 -84 TTCGGCAGCCGGCGTCGGCCGTCCGGCCAC 7 47 1 GGCGTCGGCC 0.996311 -38 ********** Masking position 7 Map Score: 36.3533 Number of sites scoring better than the average of aligned sites = 29009 Number in coding regions = 27494 Number in noncoding regions = 1515 Number of orfs with sites within 600 bp upstream = 865 Fraction of orfs with sites within 600 bp upstream = 0.138934 Motif number 3 AAGCTCGGTTGCGGTGTTGCGATACTGGGT 1 48 1 GCGGTGTTGC 0.565144 -48 CCGGATCCGCAGGACGTCGATCCGT 2 6 1 TCCGCAGGAC 0.76553 -269 AGGACGTCGATCCGTGGGTTTACCTGCGGA 2 21 1 TCCGTGGGTT 0.659648 -254 TAACGACAAATCCGCAGGTAAACCCACGGA 2 31 0 TCCGCAGGTA 0.712609 -244 TTGCAAAAAGTCCGCAGGCCGTTGCCGAAA 2 111 1 TCCGCAGGCC 0.757022 -164 GGCGGTGTCAACGGCGCAGCTTCACTGGTG 2 198 0 ACGGCGCAGC 0.529762 -77 CGCCTGGACGACGGTAGGGCGTCAGCGTTT 2 224 1 ACGGTAGGGC 0.882152 -51 CGTTAGGCGGGGGAGCCGGTCGAACC 3 7 1 GCGGGGGAGC 0.935796 -206 GTCGAACCAAGCCGTTGGGCCGGTGCGCTG 3 29 1 GCCGTTGGGC 0.789731 -184 ATGGTGGCTGGCGGCGTGGACAGCGCACCG 3 49 0 GCGGCGTGGA 0.907298 -164 GCCTTGGTCAGCGGTCGGACTACTCAGCTT 3 131 0 GCGGTCGGAC 0.792359 -82 TGACAATTGAGCCGATGGTCGAAAAGGAAC 4 24 0 GCCGATGGTC 0.713558 -277 ACGGCCCGGTGCGGCGGGGCTCATGTTCCC 4 64 0 GCGGCGGGGC 0.948726 -237 CGCAATGTCCGCGGTAGGGACGCGGCGGCT 4 131 1 GCGGTAGGGA 0.955722 -170 TAGGGACGCGGCGGCTGGGATCGGTGGGGT 4 145 1 GCGGCTGGGA 0.950793 -156 GCGGCTGGGATCGGTGGGGTGAGCGCCCGG 4 155 1 TCGGTGGGGT 0.881533 -146 GCTTTGAGAAGCCGGGCGCTCACCCCACCG 4 166 0 GCCGGGCGCT 0.265508 -135 AGCGAGGGGAGCCCCGGGACTCTTACCGGC 4 193 1 GCCCCGGGAC 0.687916 -108 CCCGCCGCCTTCGGCCGGTAAGAGTCCCGG 4 206 0 TCGGCCGGTA 0.549778 -95 CCGGCCGAAGGCGGCGGGTGTCACTGATCT 4 218 1 GCGGCGGGTG 0.921187 -83 CAACAAATAAGCCGAGGAGAGACAA 4 286 1 GCCGAGGAGA 0.70537 -15 AGCCAACCAGACCGCGGGTAGGCGCGG 5 8 0 ACCGCGGGTA 0.814003 -100 TGGGCTGCCCGCGGTGGTGTTGACCGGTGT 5 37 1 GCGGTGGTGT 0.773348 -71 GTGTGCCGACCCGGCGGTGCCGGCCCTACC 5 63 1 CCGGCGGTGC 0.746094 -45 AGTCGCGACGGCGGTAGGGCCGGCACCGCC 5 75 0 GCGGTAGGGC 0.979809 -33 GAATCGCACGGGCGAGGGGCGCCGGATGCG 6 30 0 GGCGAGGGGC 0.683534 -66 GTGTCTGCTCGCGCCAGGTCGGCGGCCGCG 6 61 1 GCGCCAGGTC 0.794661 -35 CAGGTCGGCGGCCGCGCGGCAAGATGAGGG 6 75 1 GCCGCGCGGC 0.499935 -21 CTGCCGAAACGCCGTGGATACATCGTTGTG 7 25 0 GCCGTGGATA 0.689877 -60 CTAATGGGTGGCCGGACGGCCGACGCCGGC 7 54 0 GCCGGACGGC 0.493683 -31 ********** Masking position 2 Map Score: 39.207 Number of sites scoring better than the average of aligned sites = 33442 Number in coding regions = 31131 Number in noncoding regions = 2311 Number of orfs with sites within 600 bp upstream = 1110 Fraction of orfs with sites within 600 bp upstream = 0.178285 Motif number 4 TAAGGCCCAACACCAGACACAAGCTGAGTAG 3 111 1 CACAGACACA 0.987379 -102 CGTCAGCCTAGATCAGTGACACCCGCCGCCT 4 226 0 GACAGTGACA 0.982887 -75 CAAATAAGCCGAGGAGAGACAA 4 289 1 GAGAGAGACA 0.981721 -12 CGGCGAGCAGACACAGACTCGCATC 6 5 1 GACAGACACA 0.996383 -91 GACCTGGCGCGAGCAGACACAGAATCGCACG 6 50 0 GACAGACACA 0.996383 -46 ** ******** Masking position 5 Map Score: 5.92235 Number of sites scoring better than the average of aligned sites = 16 Number in coding regions = 3 Number in noncoding regions = 13 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 5 ACTCCGATCCACCCAGTATCGCAACACCGCA 1 57 0 ACCAGTATCG 0.971849 -39 TGCGCCGTTGACACCGCCTGGACGACGGTAG 2 210 1 ACCCGCCTGG 0.978704 -65 CGGCGTTGTCTCGCAGCATGGGTAAGGCCCA 3 89 1 TCCAGCATGG 0.97396 -124 CGGTCGGACTACTCAGCTTGTGTCTGGTGTT 3 119 0 ACCAGCTTGT 0.876583 -94 GACGACTCAGCATAGTCGCGACGGC 5 93 0 ACCAGCATAG 0.978423 -15 CGGCGAGCAGACACAGACTCGCATCCGGCGC 6 11 1 ACCAGACTCG 0.980571 -85 GCGCGAGCAGACACAGAATCGCACGGGCGAG 6 44 0 ACCAGAATCG 0.983839 -52 ** ******** Masking position 9 Map Score: 4.75251 Number of sites scoring better than the average of aligned sites = 380 Number in coding regions = 322 Number in noncoding regions = 58 Number of orfs with sites within 600 bp upstream = 41 Fraction of orfs with sites within 600 bp upstream = 0.00658529 Motif number 6 GTTGCGATACTGGGTGGATCGGAGTCGTCAGGA 1 63 1 TGGGTGGTGA 0.941916 -33 CGTCGATCCGTGGGTTTACCTGCGGATTTGTCG 2 25 1 TGGGTTTCGC 0.861776 -250 GTTCAGTTTTTGGGCGACTTCGCAAAATTTGCA 2 83 1 TGGGCGATGC 0.984163 -192 GCAAGTGAAATGGGTGGACCAGCGTTGACACGC 2 144 1 TGGGTGGCGC 0.99782 -131 CGCTGTGCCATGGTCGAGTTAGCACACCAGTGA 2 174 1 TGGTCGATGC 0.946986 -101 CCCAACGGCTTGGTTCGACCGGCTCCCCCGCCT 3 15 0 TGGTTCGCGC 0.965843 -198 ACCAAGCCGTTGGGCCGGTGCGCTGTCCACGCC 3 34 1 TGGGCCGTGC 0.981791 -179 GGGCCCACAGTGGGCGGTCTGGCGTTGCCCATA 3 170 1 TGGGCGGCGC 0.997861 -43 TGGGATCGGTGGGGTGAGCGCCCGGCTTCTCAA 4 160 1 GGGGTGACCC 0.793519 -141 TGACGGCCAGTGGTTGTTTAGCCAACAAGGATG 4 252 1 TGGTTGTTCC 0.724463 -49 ACCCGCGGTCTGGTTGGCTGGGCTGCCCGCGGT 5 19 1 TGGTTGGTGC 0.986067 -89 TCGCGCCAGGTCGGCGGCCGCGCGGCAAGATGA 6 69 1 TCGGCGGCGC 0.978509 -27 CAAAGCCTAATGGGTGGCCGGACGGCCGACGCC 7 57 0 TGGGTGGCAC 0.973021 -28 ******* * ** Masking position 3 Map Score: 23.66 Number of sites scoring better than the average of aligned sites = 2757 Number in coding regions = 2513 Number in noncoding regions = 244 Number of orfs with sites within 600 bp upstream = 213 Fraction of orfs with sites within 600 bp upstream = 0.0342114 Motif number 7 TGGCCGGTATGTTGGGACGTC 1 2 0 GTTGGGACGT 0.983801 -94 GCGTGTCAACGCTGGTCCACCCATTTCACT 2 147 0 GCTGGTCCAC 0.866817 -128 GCGTTGACACGCTGTGCCATGGTCGAGTTA 2 165 1 GCTGTGCCAT 0.954349 -110 CACCAGTGAAGCTGCGCCGTTGACACCGCC 2 198 1 GCTGCGCCGT 0.962117 -77 GAACCAAGCCGTTGGGCCGGTGCGCTGTCC 3 32 1 GTTGGGCCGG 0.992156 -181 TGTGTCTGGTGTTGGGCCTTACCCATGCTG 3 102 0 GTTGGGCCTT 0.9546 -111 TTGTGACACCGTTGTGACGTCACCATTTGG 4 96 0 GTTGTGACGT 0.957105 -205 ATTGCGCTGGCTTGTGACACCGTTGTGACG 4 107 0 CTTGTGACAC 0.581633 -194 AATGTCCGCGGTAGGGACGCGGCGGCTGGG 4 134 1 GTAGGGACGC 0.955938 -167 GGTCTGGTTGGCTGGGCTGCCCGCGGTGGT 5 25 1 GCTGGGCTGC 0.944107 -83 CGCGACGGCGGTAGGGCCGGCACCGCCGGG 5 72 0 GTAGGGCCGG 0.965916 -36 TGGATACATCGTTGTGCCACAGTGTTGGCC 7 11 0 GTTGTGCCAC 0.975767 -74 ********** Masking position 4 Map Score: 18.3398 Number of sites scoring better than the average of aligned sites = 4960 Number in coding regions = 4646 Number in noncoding regions = 314 Number of orfs with sites within 600 bp upstream = 289 Fraction of orfs with sites within 600 bp upstream = 0.0464182 Motif number 8 CCGCAACCGAGCTTGTCGGCCTGTGCGTGA 1 32 0 GCTTGTCGGC 0.98893 -64 AAACGGTTCAGTTTTTGGGCGACTTCGCAA 2 78 1 GTTTTTGGGC 0.513489 -197 AGGGCGTCAGCGTTTTCGGCAATGAAAGAC 2 239 1 CGTTTTCGGC 0.976946 -36 GTCGAACCAAGCCGTTGGGCCGGTGCGCTG 3 29 1 GCCGTTGGGC 0.817071 -184 CGGTGATGGTGGCTGGCGGCGTGGACAGCG 3 54 0 GGCTGGCGGC 0.944578 -159 CCAAGGCGCCCCCTGTGGGCCCACAGTGGG 3 154 1 CCCTGTGGGC 0.983725 -59 GTATCGAGTTCCTTTTCGACCATCGGCTCA 4 17 1 CCTTTTCGAC 0.760337 -284 TGACACCCGCCGCCTTCGGCCGGTAAGAGT 4 211 0 CGCCTTCGGC 0.959044 -90 CACTGATCTAGGCTGACGGCCAGTGGTTGT 4 239 1 GGCTGACGGC 0.919066 -62 TTGTTGTCATCCTTGTTGGCTAAACAACCA 4 262 0 CCTTGTTGGC 0.905302 -39 GCCGGCACCGCCGGGTCGGCACACCGGTCA 5 57 0 CCGGGTCGGC 0.988547 -51 GCCGACCCGGCGGTGCCGGCCCTACCGCCG 5 67 1 CGGTGCCGGC 0.953375 -41 TCTGCTCGCGCCAGGTCGGCGGCCGCGCGG 6 64 1 CCAGGTCGGC 0.943126 -32 TGTATCCACGGCGTTTCGGCAGCCGGCGTC 7 33 1 GCGTTTCGGC 0.979814 -52 TTTCGGCAGCCGGCGTCGGCCGTCCGGCCA 7 46 1 CGGCGTCGGC 0.978228 -39 ********** Masking position 8 Map Score: 23.8365 Number of sites scoring better than the average of aligned sites = 12880 Number in coding regions = 12092 Number in noncoding regions = 788 Number of orfs with sites within 600 bp upstream = 602 Fraction of orfs with sites within 600 bp upstream = 0.0966913 Motif number 9 CAAGCTCGGTTGCGGTGTTGCGATACTGGG 1 47 1 TGCGGTGTTG 0.840059 -49 TACTGGGTGGATCGGAGTCGTCAGGAGGAA 1 70 1 ATCGGAGTCG 0.871413 -26 ATCGACGTCCTGCGGATCCGG 2 2 0 TGCGGATCCG 0.975469 -273 TGGGTTTACCTGCGGATTTGTCGTTACTGG 2 35 1 TGCGGATTTG 0.880244 -240 TTGCAAATTTTGCGAAGTCGCCCAAAAACT 2 87 0 TGCGAAGTCG 0.981647 -188 TTCACTGGTGTGCTAACTCGACCATGGCAC 2 178 0 TGCTAACTCG 0.874253 -97 ACACCAGTGAAGCTGCGCCGTTGACACCGC 2 197 1 AGCTGCGCCG 0.877429 -78 ACCAGACACAAGCTGAGTAGTCCGACCGCT 3 122 1 AGCTGAGTAG 0.782527 -91 CCCCTCGCTTTGAGAAGCCGGGCGCTCACC 4 172 0 TGAGAAGCCG 0.797624 -129 TTGACCGGTGTGCCGACCCGGCGGTGCCGG 5 56 1 TGCCGACCCG 0.922024 -52 GTCGCGACTATGCTGAGTCGTC 5 96 1 TGCTGAGTCG 0.989264 -12 ********** Masking position 10 Map Score: 9.67869 Number of sites scoring better than the average of aligned sites = 7822 Number in coding regions = 7274 Number in noncoding regions = 548 Number of orfs with sites within 600 bp upstream = 415 Fraction of orfs with sites within 600 bp upstream = 0.066656 Motif number 10 GAAACGTTCCTCCTGACGAC 1 86 0 GAAACGTTCC 0.747593 -10 GGTAGCTTCTGAAACGGTTCAGTTTTTGGG 2 67 1 GAAACGGTTC 0.598034 -208 GCGAATTTCGGCAACGGCCTGCGGACTTTT 2 116 0 GCAACGGCCT 0.976811 -159 CGTGGACAGCGCACCGGCCCAACGGCTTGG 3 35 0 GCACCGGCCC 0.981634 -178 AAAGGAACTCGATACGGCTAT 4 2 0 GATACGGCTA 0.808864 -299 TCACCATTTGGAAACGGCCCGGTGCGGCGG 4 77 0 GAAACGGCCC 0.989176 -224 ********** Masking position 5 Map Score: 4.4816 Number of sites scoring better than the average of aligned sites = 1066 Number in coding regions = 952 Number in noncoding regions = 114 Number of orfs with sites within 600 bp upstream = 114 Fraction of orfs with sites within 600 bp upstream = 0.0183103 Motif number 11 ********** No masking Map Score: 2.43249e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 12 ********** No masking Map Score: 2.43249e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 ********** No masking Map Score: 2.43249e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0