AlignACE version 2.2 July 7, 1998 alignACE -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -iphoB_mtub_opreg_300.orf -g0.656 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.656 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 Rv0072 300 hypothetical protein Rv0072 #2 Rv0488 300 hypothetical protein Rv0488 #3 gpm 156 gpm #4 senX3 173 senX3 #5 regX3 227 regX3 #6 tcrA 56 tcrA #7 phoP 141 phoP #8 phoR 44 phoR #9 Rv0818 129 hypothetical protein Rv0818 #10 phoT 42 phoT #11 phoY2 57 phoY2 #12 Rv0822c 165 hypothetical protein Rv0822c #13 Rv0823c 87 hypothetical protein Rv0823c #14 desA1 161 desA1 #15 Rv0825c 80 hypothetical protein Rv0825c #16 Rv0903c 130 hypothetical protein Rv0903c #17 accD3 26 accD3 #18 phoS2 271 phoS2 #19 pstS_pstB 215 pstS: pstS, pstB: pstB #20 pstC 59 pstC #21 Rv0938 115 hypothetical protein Rv0938 #22 Rv0981 300 hypothetical protein Rv0981 #23 Rv1033c 181 hypothetical protein Rv1033c #24 Rv1034c 67 hypothetical protein Rv1034c #25 Rv1035c 33 hypothetical protein Rv1035c #26 Rv1036c 110 hypothetical protein Rv1036c #27 Rv1037c 26 hypothetical protein Rv1037c #28 Rv1038c 145 hypothetical protein Rv1038c #29 PPE 76 PPE #30 PE 300 PE #31 Rv1234 149 hypothetical protein Rv1234 #32 Rv1676 71 hypothetical protein Rv1676 #33 Rv1678 100 hypothetical protein Rv1678 #34 Rv2041c 37 hypothetical protein Rv2041c #35 pncA 40 pncA #36 Rv2044c 85 hypothetical protein Rv2044c #37 lipT 48 lipT #38 uspA 33 uspA #39 ugpA 86 ugpA #40 infB 85 infB #41 Rv2840c 126 hypothetical protein Rv2840c #42 Rv2842c 194 hypothetical protein Rv2842c #43 mtrA 69 mtrA #44 tmk 96 tmk #45 sahH 104 sahH #46 Rv3252c 108 hypothetical protein Rv3252c #47 Rv3253c 90 hypothetical protein Rv3253c #48 Rv3764c 70 hypothetical protein Rv3764c #49 Rv3765c 300 hypothetical protein Rv3765c #50 Rv3843c 300 hypothetical protein Rv3843c Motif number 1 AGTCGGGAAAGGCTGGCAGACAAGGAAACG 1 114 1 GGCTGGCAGA 0.757597 -187 CCATTCCGTTTGGCCGTCGGACCGTTTCCT 1 136 0 TGGCCGTCGG 0.843329 -165 GGTCGAGGTGGGGTGGCGGGATCCATTCCG 1 158 0 GGGTGGCGGG 0.959753 -143 GGTGTGGGCACCGCGGTCGAGGTGGGGTGG 1 172 0 CCGCGGTCGA 0.594454 -129 GAAGAGGCGTTCGGGGTGGTGGTAGTCGTT 1 202 0 TCGGGGTGGT 0.655097 -99 TTTTGTGGTCAGGGCGCGGCCCGCTAGTGG 1 234 0 AGGGCGCGGC 0.929537 -67 GCGCTCTGCATCGTCGTCGGGCTCGACCTA 2 41 0 TCGTCGTCGG 0.888018 -260 GACGATGCAGAGCGCGCAGCGCGATGAGAA 2 56 1 AGCGCGCAGC 0.884249 -245 GCGCTCTGCATCGTCGTCGGGCTCGACCTA 2 99 0 TCGTCGTCGG 0.888018 -202 GACGATGCAGAGCGCGCAGCGCGATGAGAA 2 114 1 AGCGCGCAGC 0.884249 -187 GAGGTCAAGACGCCCGCCGGTGATGGGCTG 2 156 1 CGCCCGCCGG 0.973827 -145 GCCGGTGATGGGCTGGTGGCGCTCACCCCG 2 171 1 GGCTGGTGGC 0.833548 -130 CCACCTCGTAGGCCGCCCATGT 3 3 1 ACCTCGTAGG 0.588706 -154 CATACCGCCGAGGTGGTCGGCACCGTAACG 3 53 0 AGGTGGTCGG 0.744026 -104 CCGCCGAAACCGCCGGCAGGTGGGATCTCA 4 16 0 CGCCGGCAGG 0.897924 -158 TCCGATTTTGGCCTTGCCGCGCTAGGGCGA 4 126 1 GCCTTGCCGC 0.817035 -48 TGCATCGTCGTCGGCGCAGG 5 1 0 TCGGCGCAGG 0.880551 -227 GGGCACCACCCGCTTGCGGGGGAGAGTGGC 5 50 1 CGCTTGCGGG 0.886053 -178 TGCATCGTCGTCGGCGCAGGTCATCAGCGC 5 78 0 TCGGCGCAGG 0.880551 -150 GGGCACCACCCGCTTGCGGGGGAGAGTGGC 5 127 1 CGCTTGCGGG 0.886053 -101 TGCATCGTCGTCGGCGCAGGTCATCAGCGC 5 155 0 TCGGCGCAGG 0.880551 -73 GGGCACCACCCGCTTGCGGGGGAGAGTGGC 5 204 1 CGCTTGCGGG 0.886053 -24 CCCTACCGTCGGAGCCGCACACCGTCAC 6 39 0 TCGGAGCCGC 0.691943 -18 GTGTATTCACGGCGCGCCGTGGATTGAGCG 7 18 1 GGCGCGCCGT 0.905693 -124 TCAGCTTGGACCGTTGCCGCTCAATCCACG 7 35 0 CCGTTGCCGC 0.839148 -107 ATTTGGCGATTCCTGGCAGACTGTTAGCAG 7 64 1 TCCTGGCAGA 0.779661 -78 CGTTCTCCTCGGGCTGCCGATCCGATTAAC 8 20 0 GGGCTGCCGA 0.494255 -25 CGCCATGTGACGGTAGCGGCAGCTCATCTA 9 69 0 CGGTAGCGGC 0.694381 -61 GCCCCTCCAGCGTCGTGGGAAAGGCGTCT 9 111 0 GCGTCGTGGG 0.863487 -19 CCGCCACGAGTCGGCGCCGCACAATGCAGC 12 67 0 TCGGCGCCGC 0.511186 -99 CGGCGCCGACTCGTGGCGGTGCTGCGCGAA 12 78 1 TCGTGGCGGT 0.876925 -88 TGCGCGAAGGTGCGCGTAGGACACGCAGCC 12 100 1 TGCGCGTAGG 0.805066 -66 AGGTGGCGGACGCCCGCGGTGTTGGCTGCG 12 123 0 CGCCCGCGGT 0.904353 -43 CCGAGAGTCTAGGTGGCGGACGCCCGCGGT 12 133 0 AGGTGGCGGA 0.812327 -33 GACTCTCGGAGGCCGGTAGGAC 12 154 1 GGCCGGTAGG 0.562898 -12 GCGCTCTGCATCGTCGCCGGG 13 2 0 TCGTCGCCGG 0.935809 -86 GACGATGCAGAGCGCGCAGCGCGATGAGCA 13 17 1 AGCGCGCAGC 0.884249 -71 GCGCTCTGCATCGTCGCCGGGCTGGGTTGG 13 60 0 TCGTCGCCGG 0.935809 -28 GACGATGCAGAGCGCGCAGCGCG 13 75 1 AGCGCGCAGC 0.884249 -13 CGGCGGGCCCCGGTGGCCGCGTGGGGTGAA 14 23 0 CGGTGGCCGC 0.967058 -139 CGGCCACCGGGGCCCGCCGATGCCAGCATC 14 34 1 GGCCCGCCGA 0.895237 -128 TCCTGCCCGCTGCTGGCAGCTCAACATGCC 14 62 1 TGCTGGCAGC 0.904668 -100 GCTCGCGGGGTGCGCGCGGG 16 1 0 TGCGCGCGGG 0.94923 -130 ACTCTGTGTCTGCTCGCGGGGTGCGCGCGG 16 12 0 TGCTCGCGGG 0.979013 -119 CCAGCACGCGACCCGGCGGCTCACCCTCCC 16 85 1 ACCCGGCGGC 0.890758 -46 CCCTCTTTTCCGGCTGTCGGCCGAAACGGT 18 15 1 CGGCTGTCGG 0.471912 -257 CCCCTGAGACCCGCGGTCGAACCAGCCACG 18 128 1 CCGCGGTCGA 0.594454 -144 CGGCGAACTTGGCGTGCCGTCGCCCTTGGC 18 183 0 GGCGTGCCGT 0.658265 -89 CCAGCTGTTTTGCTCGCAGCAAATGAAGCT 18 233 0 TGCTCGCAGC 0.927511 -39 CGAGCAAAACAGCTGGTCGGCCGTTAGGAA 18 247 1 AGCTGGTCGG 0.779914 -25 CCTTGGACAAAGCGCGCCGTCGACCCTCAG 19 44 1 AGCGCGCCGT 0.876924 -172 GAATACCGACCCCGGGTCGGTGGCTCGGCG 19 145 1 CCCGGGTCGG 0.915882 -71 TCGCCACCGGTGGTCGCCGAGCCACCGACC 19 159 0 TGGTCGCCGA 0.928837 -57 GAGGGGGTCGTGGTGGCGGATCCACTCGCC 19 184 0 TGGTGGCGGA 0.902532 -32 GGTTGCTGTCGCGTGGTGGTCAACGAGG 20 9 0 GCGTGGTGGT 0.554389 -51 CGTGACGTTCCGCTCGCGGACAATCAAGGC 21 23 0 CGCTCGCGGA 0.947572 -93 ATTCGGACGATCCCTGCCGTTCCACGCCTG 22 23 1 TCCCTGCCGT 0.52283 -278 GTTCCACGCCTGGGCGCAGGCACAAACCGC 22 41 1 TGGGCGCAGG 0.941885 -260 AGAGTTCTCGTCCGCGCGGGTTTCGCCTGC 22 131 0 TCCGCGCGGG 0.506372 -170 ATGTGGCTAAACCTCGTCGAACAAACCCGC 22 232 1 ACCTCGTCGA 0.595282 -69 TGGCCTGAGAGGCGCGCCGTGGTATGCGGG 22 257 0 GGCGCGCCGT 0.905693 -44 CAGTGTCGTCGCAGCGCCTGAGACT 22 286 0 TCGTCGCAGC 0.908526 -15 TATACGGAGCCCCCGGTGGACCGG 23 5 0 CCCCGGTGGA 0.630721 -177 TGAAAAGGTGACCGGGCGGGATGTCGGGCT 23 68 0 ACCGGGCGGG 0.924284 -114 CACAAGGCCCAGGTCGTCGACAACGATGAC 24 27 1 AGGTCGTCGA 0.560179 -41 GTTGTAATTGACGGCGCGGGCCTTAAGCCA 26 14 0 ACGGCGCGGG 0.500677 -97 GTCAATTACAACGTGGCCGCACACCGGTTG 26 32 1 ACGTGGCCGC 0.915962 -79 CGCGGTGGTGGCCGCGTGGCGGACAGGTTA 28 67 0 GCCGCGTGGC 0.772509 -79 GCGGCTGTGATCGGCGCGGTGGTGGCCGCG 28 81 0 TCGGCGCGGT 0.502918 -65 TGTTGGTTGAGCGTGGCCGCCCGTACGTCT 29 16 0 GCGTGGCCGC 0.951153 -61 GCCTAGAATCCGCGCGCCGCGCGTCTCATT 30 37 1 CGCGCGCCGC 0.926316 -264 CCGCTAGCACCCCGGGCCGACCCTGTGTGT 30 251 0 CCCGGGCCGA 0.880081 -50 GTGTGAAACCTGCCGGCCGCTAGCACCCCG 30 267 0 TGCCGGCCGC 0.950668 -34 ACGGCGAGCATCGTTGCCGGGATAGGTTGA 31 16 0 TCGTTGCCGG 0.841288 -134 CCGGCAACGATGCTCGCCGTTCGGTGGGCC 31 26 1 TGCTCGCCGT 0.928224 -124 GGGCCTCGGTCGCTCGCGGGTTGAGTGGAT 31 51 1 CGCTCGCGGG 0.982151 -99 CGCTGAAAAAGGGGGGCGGAGGAGAATGAG 31 125 1 GGGGGGCGGA 0.908161 -25 CAATTGTCAGCGCGCGTGGATTGCGTGCGG 32 51 1 CGCGCGTGGA 0.82833 -21 GCGCGTGGATTGCGTGCGGG 32 62 1 TGCGTGCGGG 0.89281 -10 GCCAAGCCGACCGGCGTGGCGTCGA 33 6 0 CCGGCGTGGC 0.763 -95 GCAAACTGCCCGGGCAGTCGCCCGAACG 35 9 1 CCCGGGCAGT 0.81401 -32 TTGCCTTTCCAGGTCGCGGCGCTCCGGCCA 36 25 0 AGGTCGCGGC 0.936784 -61 CCCGACAGGCTAGCCGCCCCGCCCCCA 37 8 1 GGCTAGCCGC 0.670432 -41 AGTGCAGGAATGGGGGCGGGGCGGCTAGCC 37 18 0 TGGGGGCGGG 0.973207 -31 GGTGTATTAAAGCTGGTCGTTACGGTGGAG 38 13 0 AGCTGGTCGT 0.483328 -21 GGTTCATCGACCGTGGCGGCAAACTCGCCG 39 41 1 CCGTGGCGGC 0.963563 -46 GGGGATTATCCGGGCGTCGATGCGCCGAGG 41 99 0 CGGGCGTCGA 0.805586 -28 GCCCGGATAATCCCCGCGGACCG 41 114 1 TCCCCGCGGA 0.867635 -13 TCGCCTGCCTTCGTAGCGGCGTCTTTCTGA 42 26 0 TCGTAGCGGC 0.643519 -169 CACGCAGCAGCCGGCGTAGCTACCAACGAT 42 101 0 CCGGCGTAGC 0.759104 -94 GGCTGCTGCGTGCCGGCGGGACACTGGGAG 42 119 1 TGCCGGCGGG 0.957086 -76 CTGGGAGCCGCCCTGGCGGCGCCTCCGCTA 42 142 1 CCCTGGCGGC 0.969891 -53 ATTTTGCGTCTGCTCGCGGGTGGGAGGCAC 44 11 0 TGCTCGCGGG 0.979013 -86 GCGGCCCTGTCGGTGGCGGCGCGAGCAGAC 44 74 0 CGGTGGCGGC 0.965585 -23 CCGTCGGTCAGCCCCGCAGG 45 1 0 GCCCCGCAGG 0.887142 -104 GTCACTGTAGCCGCCGTCGGTCAGCCCCGC 45 14 0 CCGCCGTCGG 0.858253 -91 CTCACAGGGATCCGAGCGGGCTACTTAGCC 45 60 0 TCCGAGCGGG 0.746328 -45 CGACCCGTCATCCTCGCAGAGTACCCAGTA 47 36 1 TCCTCGCAGA 0.826614 -55 TTGGTCGCTTCGGCTGCGGCTCCTGGTCGG 48 23 1 CGGCTGCGGC 0.771774 -48 CGGCTGCGGCTCCTGGTCGGACAGGTTGTC 48 33 1 TCCTGGTCGG 0.8778 -38 CAGGTTGTCGTCCTCGCCGTGGTGTGT 48 54 1 TCCTCGCCGT 0.910138 -17 TGGTCGCTCTCCGTCGCCGTTGTGGAAGTC 49 21 0 CCGTCGCCGT 0.879732 -280 GCTGCCTCAAGCGTGGCAGCGGGATTTGCT 49 70 1 GCGTGGCAGC 0.86058 -231 TGCTTCAGCAGCCCGGTCGCCAGCAGCCGC 49 96 1 GCCCGGTCGC 0.76119 -205 GGTACCAACATGCGCGCCGACGTGAGTGGG 49 130 1 TGCGCGCCGA 0.929783 -171 GCGGGCCGGATCCGGGCGGTACCCCACTCA 49 152 0 TCCGGGCGGT 0.904283 -149 GGAGCCTGCCAGCGGGCCGGATCCGGGCGG 49 163 0 AGCGGGCCGG 0.955931 -138 CTCATCGACAGCCTGGCAGGTACCCGAGCG 50 27 0 GCCTGGCAGG 0.901113 -274 TGGGCGCGCCCGGTCGCGGCACGTCCAGCA 50 193 0 CGGTCGCGGC 0.974059 -108 TACGGCATTGTCCGCGCCGTCAACAGGCGT 50 246 0 TCCGCGCCGT 0.513759 -55 CCGTACCGGTGCGGGGCGGAGAAGTCACTA 50 271 1 GCGGGGCGGA 0.839369 -30 ********** Masking position 6 Map Score: 155.988 Number of sites scoring better than the average of aligned sites = 85213 Number in coding regions = 79707 Number in noncoding regions = 5506 Number of orfs with sites within 600 bp upstream = 1628 Fraction of orfs with sites within 600 bp upstream = 0.261484 Motif number 2 CACCCGGTGACCGGTGCGAAGTCCAC 1 5 1 CGGTGACCGG 0.851127 -296 TTGTCGATATCGGTTGAGCCGCCGGTTGCCCA 1 49 0 CGGTTGAGCC 0.501046 -252 GCACCGCGGTCGAGGTGGGGTGGCGGGATCCA 1 163 0 CGAGGTGGGG 0.961311 -138 ACCTCGACCGCGGTGCCCACACCAACGACTAC 1 179 1 CGGTGCCCCC 0.847492 -122 AAGAGGCGTTCGGGGTGGTGGTAGTCGTTGGT 1 199 0 CGGGGTGGGT 0.791339 -102 CGACCACTAGCGGGCCGCGCCCTGACCACAAA 1 231 1 CGGGCCGCCC 0.602656 -70 AGCCCGACGACGATGCAGAGCGCGCAGCGCGA 2 48 1 CGATGCAGGG 0.960087 -253 AGCCCGACGACGATGCAGAGCGCGCAGCGCGA 2 106 1 CGATGCAGGG 0.960087 -195 AGACGCCCGCCGGTGATGGGCTGGTGGCGCTC 2 163 1 CGGTGATGGT 0.43669 -138 TTCATACCGCCGAGGTGGTCGGCACCGTAACG 3 53 0 CGAGGTGGCG 0.939411 -104 GGTATGAACGCGCTGCGCAGCGGACCGAGGAG 3 77 1 CGCTGCGCGG 0.494936 -80 TTTTGGTCCACGATGAGGAGTGCGGGAGTGCG 3 119 1 CGATGAGGGG 0.93879 -38 CACCTGCCGGCGGTTTCGGCGGCTGATGGTGT 4 24 1 CGGTTTCGCG 0.69278 -150 TTGGCCTTGCCGCGCTAGGGCGACGTTCACCG 4 133 1 CGCGCTAGGG 0.395633 -41 GCGCCGACGACGATGCAGAGCGTAGCGATGAG 5 14 1 CGATGCAGGG 0.960087 -214 CAGAGCGTAGCGATGAGGTGGGGGCACCACCC 5 29 1 CGATGAGGGG 0.938803 -199 CACCCGCTTGCGGGGGAGAGTGGCGCTGATGA 5 56 1 CGGGGGAGGG 0.966787 -172 GCGCCGACGACGATGCAGAGCGTAGCGATGAG 5 91 1 CGATGCAGGG 0.960087 -137 CAGAGCGTAGCGATGAGGTGGGGGCACCACCC 5 106 1 CGATGAGGGG 0.938803 -122 CACCCGCTTGCGGGGGAGAGTGGCGCTGATGA 5 133 1 CGGGGGAGGG 0.966787 -95 GCGCCGACGACGATGCAGAGCGTAGCGATGAG 5 168 1 CGATGCAGGG 0.960087 -60 CAGAGCGTAGCGATGAGGTGGGGGCACCACCC 5 183 1 CGATGAGGGG 0.938803 -45 CACCCGCTTGCGGGGGAGAGTGGCGCTG 5 210 1 CGGGGGAGGG 0.966787 -18 ACCGTCACAGCGAGGTAGACAGATCAGGAGAA 6 15 0 CGAGGTAGCG 0.88003 -42 CTCGCTGTGACGGTGTGCGGCTCCGACGGTAG 6 33 1 CGGTGTGCGT 0.544621 -24 GCTCAATCCACGGCGCGCCGTGAATACACTCG 7 15 0 CGGCGCGCGG 0.720407 -127 CGCTCCGGGACGGGCTCGAGCGCTGGGCGACA 9 13 0 CGGGCTCGGG 0.596207 -117 TGCCGCCTGACGAGGCGCTCCGGGACGGGCTC 9 28 0 CGAGGCGCCG 0.93729 -102 TCACATGGCGCGATGAACTGGGAGACGCCTTT 9 89 1 CGATGAACGG 0.723964 -41 TTTCCCACGACGCTGGAGGGGC 9 118 1 CGCTGGAGGC 0.701293 -12 GGTCCAGACGCGATTTCGACAGGGTCTCGAT 12 10 0 CGATTTCGCG 0.568183 -156 TAAATCAGTACGATGTGGGCCTTGCTGCATTG 12 44 1 CGATGTGGCT 0.547486 -122 AGCACCGCCACGAGTCGGCGCCGCACAATGCA 12 69 0 CGAGTCGGGC 0.814159 -97 CGACTCGTGGCGGTGCTGCGCGAAGGTGCGCG 12 84 1 CGGTGCTGGG 0.817736 -82 CGGACGCCCGCGGTGTTGGCTGCGTGTCCTAC 12 115 0 CGGTGTTGCG 0.885128 -51 CCCGGCGACGATGCAGAGCGCGCAGCGCGA 13 9 1 CGATGCAGGG 0.960087 -79 AGCCCGGCGACGATGCAGAGCGCGCAGCGCG 13 67 1 CGATGCAGGG 0.960087 -21 ACGCGGCCACCGGGGCCCGCCGATGCCAGCAT 14 31 1 CGGGGCCCCG 0.648486 -131 GCATCCTGCCCGCTGCTGGCAGCTCAACATGC 14 59 1 CGCTGCTGCG 0.836175 -103 TGTCTGCTCGCGGGGTGCGCGCGGG 16 4 0 CGGGGTGCCC 0.788345 -127 TCAAAACCGCCGATTTTGTGCGACTCTGTGTC 16 32 0 CGATTTTGGG 0.536789 -99 GGTTCGACCGCGGGTCTCAGGGGAAGGATGTC 18 119 0 CGGGTCTCGG 0.698302 -153 CGCCCTTGGCCGGGGTTGACCCCTGATGATGG 18 161 0 CGGGGTTGCC 0.772736 -111 CGATGCACAACGGTGACGGCTCGAATACCGAC 19 123 1 CGGTGACGCC 0.793183 -93 ATACCGACCCCGGGTCGGTGGCTCGGCGACCA 19 147 1 CGGGTCGGGC 0.882464 -69 CGGCGACCACCGGTGGCGAGTGGATCCGCCAC 19 170 1 CGGTGGCGGG 0.969918 -46 CAACTCCTCTCGAGGGGGTCGTGGTGGCGGAT 19 193 0 CGAGGGGGCT 0.668629 -23 CAAAGCAGCCCGATGGCCCGACGGAGGTTGCT 20 32 0 CGATGGCCGC 0.728786 -28 GCAGAACCCCAGGTGCAGTGTGCACCACGTTC 22 84 0 AGGTGCAGGG 0.317414 -217 TGCTGACACACGATGAGGGCAGAACCCCAGGT 22 102 0 CGATGAGGCG 0.905411 -199 CCGGTCCACCGGGGGCTCCGTAT 23 2 1 CGGTCCACGG 0.717581 -180 TCGTCGACAACGATGACGGGATTGTGCTGGAT 24 40 1 CGATGACGGT 0.451505 -28 ACACACCAACCGGTGTGCGGCCACGTTGTAAT 26 36 0 CGGTGTGCGC 0.839153 -75 GTGGTGGCCGCGTGGCGGACAGGTTATGACTC 28 61 0 CGTGGCGGCG 0.730699 -85 GTGATCGGCGCGGTGGTGGCCGCGTGGCGGAC 28 73 0 CGGTGGTGCG 0.88655 -73 GTTGGTTGAGCGTGGCCGCCCGTACGTCTGCC 29 13 0 CGTGGCCGCG 0.613364 -64 AAATGAGACGCGCGGCGCGCGGATTCTAGGCG 30 36 0 CGCGGCGCCG 0.859167 -265 CCATGCCTTTCGGTCGCGACTGTGGAGGCTTG 30 178 1 CGGTCGCGCG 0.746932 -123 ATCCCGGCAACGATGCTCGCCGTTCGGTGGGC 31 23 1 CGATGCTCCG 0.813071 -127 CGCGAGCGACCGAGGCCCACCGAACGGCGAGC 31 37 0 CGAGGCCCCG 0.739593 -113 TGAGAGCAGGCGATGCCGTCATCGTGCTGCCA 32 21 1 CGATGCCGCT 0.673297 -51 GCCTTCGCGACGAGTTGGGGCTTGCGCCGCGT 33 59 1 CGAGTTGGGT 0.262376 -42 CGTGCTCCCGATTTTGGGTCCTGTGGTACA 34 18 0 CGATTTTGGC 0.310172 -20 ACCATACGTTCGGGCGACTGCCCGGGCAGTTT 35 13 0 CGGGCGACGC 0.378857 -28 CTTTCCAGGTCGCGGCGCTCCGGCCACTGACA 36 19 0 CGCGGCGCCG 0.7295 -67 GGAATGGGGGCGGGGCGGCTAGCCTGTCGGG 37 10 0 CGGGGCGGTG 0.641789 -39 TAGCTAAACCCGAGGCGCGGCCCACGACTGTC 40 43 1 CGAGGCGCGC 0.907784 -43 GTAGCGTCACCGGGCAAGCCCGATTGCCCGGC 41 37 0 CGGGCAAGCG 0.40648 -90 ATCCGGGCGTCGATGCGCCGAGGCCGAAGGCT 41 90 0 CGATGCGCGG 0.956644 -37 CGGTCCGCGGGGATTATCCGGG 41 115 0 CGGTCCGCGG 0.847185 -12 AGTTTTGTCCCGATGTGGTGACACC 43 55 1 CGATGTGGGC 0.894158 -15 TGCGTCTGCTCGCGGGTGGGAGGCAC 44 5 0 CGCGGGTGGG 0.828499 -92 TGAAAATGGGCGATTTTGCGTCTGCTCGCGGG 44 21 0 CGATTTTGGC 0.310172 -76 ACGAAAAGGGCGATTTTGCGTCTGCTCGCGCC 44 55 1 CGATTTTGGC 0.310172 -42 GCGGCCCTGTCGGTGGCGGCGCGAGCAGACGC 44 72 0 CGGTGGCGCC 0.888319 -25 CCTGCGGGGCTGACCGACGGCGGCTA 45 5 1 CGGGGCTGCG 0.659229 -100 GGGTACTCTGCGAGGATGACGGGTCGCGTAGG 47 30 0 CGAGGATGCG 0.783409 -61 GCGGTCACAACGAGTGCGAGAGGACGGGTGC 47 70 1 CGAGTGCGGG 0.778592 -21 CCGGGTCGGCGACTTCCACAACG 49 2 1 CGGGTCGGGC 0.882464 -299 TCCACAACGGCGACGGAGAGCGACCAATTGGC 49 25 1 CGACGGAGGG 0.514586 -276 CCCGCTGCCACGCTTGAGGCAGCGTCCCGGAC 49 61 0 CGCTTGAGCG 0.377685 -240 AACCGAGATGCGGTGCTGCGTCACAGCGTCAA 49 267 0 CGGTGCTGGC 0.931281 -34 CACCGCATCTCGGTTGAGCGTGTCGTA 49 284 1 CGGTTGAGGG 0.805734 -17 CCATTTCGCTCGGGTACCTGCCAGGCTGTCGA 50 21 1 CGGGTACCGC 0.289433 -280 TGGGCGCGCCCGGTCGCGGCACGTCCAGCACG 50 191 0 CGGTCGCGCC 0.540313 -110 CCCAATCCAGCGCGGAAGCCTGCCTCAACGCC 50 219 1 CGCGGAAGCG 0.673971 -82 AATGCCGTACCGGTGCGGGGCGGAGAAGTCAC 50 267 1 CGGTGCGGGG 0.938735 -34 ******** * * Masking position 2 Map Score: 115.295 Number of sites scoring better than the average of aligned sites = 40032 Number in coding regions = 37400 Number in noncoding regions = 2632 Number of orfs with sites within 600 bp upstream = 1192 Fraction of orfs with sites within 600 bp upstream = 0.191455 Motif number 3 CCACCTCGACCGCGGTGCCCACACCAACGA 1 177 1 CGCGGTGCCC 0.593609 -124 TTGTGGTCAGGGCGCGGCCCGCTAGTGGTC 1 232 0 GGCGCGGCCC 0.973607 -69 TCCTTCTCATCGCGCTGCGC 2 1 0 CGCGCTGCGC 0.981932 -300 CGATGCAGAGCGCGCAGCGCGATGAGAAGG 2 58 1 CGCGCAGCGC 0.986547 -243 TATTTCTCATCGCGCTGCGCGCTCTGCATC 2 117 0 CGCGCTGCGC 0.981932 -184 GGGCTGGTGGCGCTCACCCCGTTCCGGACT 2 180 1 CGCTCACCCC 0.939088 -121 GCGGTATGAACGCGCTGCGCAGCGGACCGA 3 75 1 CGCGCTGCGC 0.981932 -82 CTCATCGCTACGCTCTGCATCGTCGTCGGC 5 16 0 CGCTCTGCAT 0.703637 -212 CGATGAGGTGGGGGCACCACCCGCTTGCGG 5 39 1 GGGGCACCAC 0.843936 -189 TCATCAGCGCCACTCTCCCCCGCAAGCGGG 5 58 0 CACTCTCCCC 0.654032 -170 CTCATCGCTACGCTCTGCATCGTCGTCGGC 5 93 0 CGCTCTGCAT 0.703637 -135 CGATGAGGTGGGGGCACCACCCGCTTGCGG 5 116 1 GGGGCACCAC 0.843936 -112 TCATCAGCGCCACTCTCCCCCGCAAGCGGG 5 135 0 CACTCTCCCC 0.654032 -93 CTCATCGCTACGCTCTGCATCGTCGTCGGC 5 170 0 CGCTCTGCAT 0.703637 -58 CGATGAGGTGGGGGCACCACCCGCTTGCGG 5 193 1 GGGGCACCAC 0.843936 -35 CAGCGCCACTCTCCCCCGCAAGCGGG 5 212 0 CACTCTCCCC 0.654032 -16 CCGTCGGAGCCGCACACCGTCACAGCGAGG 6 32 0 CGCACACCGT 0.428552 -25 CTCAATCCACGGCGCGCCGTGAATACACTC 7 16 0 GGCGCGCCGT 0.86183 -126 ATTGTCGCCCAGCGCTCGAGCCCGT 9 6 1 CGCCCAGCGC 0.933325 -124 AGCGCCTCGTCAGGCGGCACGTTATCGTTA 9 41 1 CAGGCGGCAC 0.699624 -89 GCCACGAGTCGGCGCCGCACAATGCAGCAA 12 65 0 GGCGCCGCAC 0.892683 -101 CGCGCACCTTCGCGCAGCACCGCCACGAGT 12 86 0 CGCGCAGCAC 0.98085 -80 CGATGCAGAGCGCGCAGCGCGATGAGCAGG 13 19 1 CGCGCAGCGC 0.986547 -69 CGATGCAGAGCGCGCAGCGCG 13 77 1 CGCGCAGCGC 0.986547 -11 GTTTGGGCTTCGCGCGGCATGTTGAGCTGC 14 77 0 CGCGCGGCAT 0.916657 -85 CCCGCGCGCACCCCGCGAGCAGAC 16 5 1 CGCGCACCCC 0.98091 -126 TGTGTCTGCTCGCCCAGCACGCGACCCGGC 16 72 1 CGCCCAGCAC 0.907209 -59 GCGACCCGGCGGCTCACCCTCCCACCCTGC 16 92 1 GGCTCACCCT 0.659468 -39 TGGGTCAGCCTATATAGCCTC 17 2 1 GGGTCAGCCT 0.440087 -25 ATACACAGCAGGCACACCCCCAGGTTTCGG 18 77 0 GGCACACCCC 0.69789 -195 GTGGCGGATCCACTCGCCACCGGTGGTCGC 19 172 0 CACTCGCCAC 0.632593 -44 GAACGTGGTGCACACTGCACCTGGGGTTCT 22 84 1 CACACTGCAC 0.319085 -217 TGGCCTGAGAGGCGCGCCGTGGTATGCGGG 22 257 0 GGCGCGCCGT 0.86183 -44 CGGTCCACCGGGGGCTCCGTATACCCGGAA 23 12 1 GGGGCTCCGT 0.544932 -170 GTCCGCCACGCGGCCACCACCGCGCCGATC 28 73 1 CGGCCACCAC 0.631677 -73 ACAAATGAGACGCGCGGCGCGCGGATTCTA 30 40 0 CGCGCGGCGC 0.986934 -261 CAAACACACAGGGTCGGCCCGGGGTGCTAG 30 248 1 GGGTCGGCCC 0.782876 -53 GGCAGTATCACACGCGGCGCAAGCCCCAAC 33 72 0 CACGCGGCGC 0.925916 -29 ACAGGCTAGCCGCCCCGCCCCCATTCCTGC 37 15 1 CGCCCCGCCC 0.800851 -34 CTAAACCCGAGGCGCGGCCCACGACTGTCG 40 46 1 GGCGCGGCCC 0.973607 -40 TCATCTAGCGGAGGCGCCGCCAGGGCGGCT 42 147 0 GAGGCGCCGC 0.568855 -48 GGACAAAACTGGCGCACCACACGGGCGTTT 43 35 0 GGCGCACCAC 0.953026 -35 GGCGCGGCCCTGTCGGTGGC 44 87 0 GGCGCGGCCC 0.973607 -10 TAGCCGCCGTCGGTCAGCCCCGCAGG 45 7 0 CGGTCAGCCC 0.862208 -98 GCCAATTGGTCGCTCTCCGTCGCCGTTGTG 49 27 0 CGCTCTCCGT 0.69086 -274 GTTGGTCCGGGACGCTGCCTCAAGCGTGGC 49 57 1 GACGCTGCCT 0.54626 -244 TTGACGCTGTGACGCAGCACCGCATCTCGG 49 267 1 GACGCAGCAC 0.836238 -34 GTGACTTCTCCGCCCCGCACCGGTACGGCA 50 269 0 CGCCCCGCAC 0.724915 -32 ********** Masking position 8 Map Score: 89.8203 Number of sites scoring better than the average of aligned sites = 16110 Number in coding regions = 14839 Number in noncoding regions = 1271 Number of orfs with sites within 600 bp upstream = 723 Fraction of orfs with sites within 600 bp upstream = 0.116126 Motif number 4 CACCCGGTGACCGGTGCGAAGTCCACCA 1 6 1 GGTGACGTCG 0.358882 -295 GTTGCCCACTGGTCGATATGGTGGACTTCGCAC 1 24 0 GGTCGTTGTG 0.298129 -277 GTGGGCAACCGGCGGCTCAACCGATATCGACAA 1 48 1 GGCGGTAACG 0.340903 -253 TGCAGGTGAAGGTGAGTTTGTCGATATCGGTTG 1 65 0 GGTGATTGCG 0.919545 -236 CTTGACGTTTTGTGGTCAGGGCGCGGCCCGCTA 1 238 0 TGTGGCGGCG 0.58352 -63 ACTTGTGGGGCCTGGTCTTGACGTTTTGTGGTC 1 254 0 CCTGGCTGCG 0.610152 -47 GAAGGAGTTGGGCGGTTAGGTCGAGCCCGACGA 2 25 1 GGCGGTGGCG 0.986902 -276 GAAGGAGTTGGGCGGTTAGGTCGAGCCCGACGA 2 83 1 GGCGGTGGCG 0.986902 -218 TAGCACTCGTGGAGGTCAAGACGCCCGCCGGTG 2 145 1 GGAGGCAGCG 0.827032 -156 TATCGGCCTTGGTGAACCGGCCGTTACGGTGCC 3 32 1 GGTGACGGCG 0.945863 -125 CGTTCATACCGCCGAGGTGGTCGGCACCGTAAC 3 54 0 GCCGAGGGCG 0.611206 -103 CCCACCTGCCGGCGGTTTCGGCGGCTGATGGTG 4 22 1 GGCGGTCGCG 0.915706 -152 CAACGGTCCAAGCTGATTTGGCGATTCCTGGCA 7 49 1 AGCTGTTGCG 0.34693 -93 ATAACGTGCCGCCTGACGAGGCGCTCCGGGACG 9 33 0 GCCTGCAGCG 0.671874 -97 CTGCATCGTCGCCGGGCTGGGTTGGATTGCCCG 13 52 0 GCCGGCGGTT 0.153149 -36 GCTGCTGGCAGCTCAACATGCCGCGCGAAGCCC 14 70 1 GCTCACTGCG 0.490119 -92 TGGTGGTTTTGCCTGCTGAATCTT 15 2 1 GGTGGTTGCT 0.746659 -79 GCACAAAATCGGCGGTTTTGATGCGACTCTGTG 16 43 1 GGCGGTTGTG 0.836864 -88 CAGCAGGGTGGGAGGGTGAGCCGCCGGGTCGCG 16 91 0 GGAGGTAGCG 0.746604 -40 TGGACACGTGGCTGGTTCGACCGCGGGTCTCAG 18 131 0 GCTGGTGACG 0.364692 -141 GTTAACGGTCGGCGAACTTGGCGTGCCGTCGCC 18 189 0 GGCGACTGCG 0.967836 -83 CGAGCAAAACAGCTGGTCGGCCGTTAGGAACTG 18 247 1 AGCTGTGGCG 0.333517 -25 CTCTCGAGGGGGTCGTGGTGGCGGATCCACTCG 19 186 0 GGTCGGTGCG 0.607023 -30 CGGGCCATCGGGCTGCTTTGCGGAGC 20 44 1 GGCTGTTGGG 0.556551 -16 GGGCCAATGTGGCTGATGTGGCTAAACCTCGTC 22 217 1 GGCTGTTGCT 0.492061 -84 GGCCTGAAAAGGTGACCGGGCGGGATGTCGGGC 23 69 0 GGTGACGGGG 0.57503 -113 CGGCGGTTTTGCCGCATTGCGCTG 25 2 1 GGCGGTTGCG 0.987653 -32 GCCGCATTGCGCTGGACGGGTCG 25 21 1 GCTGGCGGCG 0.96675 -13 GCCGCACACCGGTTGGTGTGTGGCCACGTTGTT 26 47 1 GGTTGTTGGG 0.436169 -64 AGGTCTTGGCGGCTGACATGGCGGTGTGATCTG 30 96 0 GGCTGCTGCG 0.963367 -205 TCGCGACTGTGGAGGCTTGGCCGGTTAGCGTTA 30 191 1 GGAGGTGGCG 0.932212 -110 CGGGTTGAGTGGATAGTGTGCCGGGAGTAGCTG 31 67 1 GGATATTGCG 0.406758 -83 GCCGGGAGTAGCTGGACCTGACTGGACATGAAA 31 86 1 GCTGGCTGCT 0.648523 -64 CTCCTTGAGAGCAGGCGATGCCGTCATCGTGCT 32 16 1 GCAGGGTGCG 0.567829 -56 ACGCCACGCCGGTCGGCTTGGCGTTGGCCCACG 33 14 1 GGTCGCTGCG 0.914865 -87 GGGGCGGGGCGGCTAGCCTGTCGGG 37 3 0 GGCTACTGCG 0.859084 -46 GTGTATTAAAGCTGGTCGTTACGGTGGAGTC 38 9 0 GCTGGCTTCG 0.497216 -25 CTGGCCGACATTGCCGTGACGGCGGT 39 4 1 GCCGAATGCG 0.295797 -83 GTATTCTGTCGGCGAGTTTGCCGCCACGGTCGA 39 47 0 GGCGATTGCG 0.948831 -40 CCGCTACGAAGGCAGGCGAGACGTTGAACGGCG 42 37 1 GGCAGCAGCG 0.630178 -158 GCGTATCGTTGGTAGCTACGCCGGCTGCTGCGT 42 97 1 GGTAGTCGCG 0.303388 -98 GGCGCGGCCCTGTCGGTGGCGGCGC 44 82 0 CGCGGCTGCG 0.868105 -15 TACTCTGCGAGGATGACGGGTCGCGTAGGGAAC 47 26 0 GGATGCGGCG 0.818883 -65 AGCGGCTGCTGGCGACCGGGCTGCTGAAGCAAA 49 94 0 GGCGACGGTG 0.645124 -207 CCGCATCTCGGTTGAGCGTGTCGTA 49 286 1 GTTGACTGCG 0.30341 -15 GATAGTCGTAGGTAGCTGTGTCGTGCTGGACGT 50 170 1 GGTAGTTGCG 0.762291 -131 GCTGTGTCGTGCTGGACGTGCCGCGACCGGGCG 50 184 1 GCTGGCTGCG 0.968619 -117 AGGCTTCCGCGCTGGATTGGGCGCGCCCGGTCG 50 207 0 GCTGGTGGCG 0.947137 -94 ***** * ** ** Masking position 13 Map Score: 48.845 Number of sites scoring better than the average of aligned sites = 30531 Number in coding regions = 29072 Number in noncoding regions = 1459 Number of orfs with sites within 600 bp upstream = 852 Fraction of orfs with sites within 600 bp upstream = 0.136845 Motif number 5 TTGTCGATATCGGTTGAGCCGCCGGTTGCCCACT 1 47 0 CGGTGAGCCG 0.303698 -254 GCGCAGCGCGATGAGAAGGAGTTGGGCGGTT 2 8 1 GCGTGAGAAG 0.987531 -293 AGCGCGCAGCGCGATGAGAAGGAGTTGGGCGGTT 2 66 1 GCGTGAGAAG 0.987531 -235 AGCGCGCAGCGCGATGAGAAATAGCACTCGTGGA 2 124 1 GCGTGAGAAG 0.987531 -177 TCAGAAATTCGCGATCACAATTTGCGCGTTCAAG 2 209 1 GCGTCACAAG 0.808326 -92 CGGTATGAACGCGCTGCGCAGCGGACCGAGGAGA 3 76 1 GCGTGCGCAG 0.749254 -81 GCGCAGCGGACCGAGGAGAATTCGGGCATTTTGG 3 91 1 CCGGGAGAAG 0.959533 -66 GCAGAGCGTAGCGATGAGGTGGGGGCACCACCCG 5 28 1 GCGTGAGGTG 0.907348 -200 GGGGAGAGTGGCGCTGATGACCTGCGCCGACGAC 5 68 1 GCGTGATGAG 0.937798 -160 GCAGAGCGTAGCGATGAGGTGGGGGCACCACCCG 5 105 1 GCGTGAGGTG 0.907348 -123 GGGGAGAGTGGCGCTGATGACCTGCGCCGACGAC 5 145 1 GCGTGATGAG 0.937798 -83 GCAGAGCGTAGCGATGAGGTGGGGGCACCACCCG 5 182 1 GCGTGAGGTG 0.907348 -46 GATCGGCAGCCCGAGGAGAACGCGGCA 8 28 1 CCGGGAGAAG 0.959533 -17 GCGCGAAGGTGCGCGTAGGACACGCAGCCAACAC 12 101 1 GCGGTAGGAG 0.653585 -65 AGCGCGCAGCGCGATGAGCAGGAGGCGGGCAATC 13 27 1 GCGTGAGCAG 0.965564 -61 CGCGCACCCCGCGAGCAGACACAGAGTCGCACAA 16 15 1 GCGGCAGACG 0.877005 -116 CGCGTGCTGGGCGAGCAGACACAGAGTCGCATCA 16 61 0 GCGGCAGACG 0.877005 -70 TGTCCGTATGCCGTGCATACACAGCAGGCACACC 18 89 0 CCGGCATACG 0.335511 -183 TCAGGAGGGGCCGCTGATACTGAGGGTCGACGGC 19 59 0 CCGTGATACG 0.722283 -157 TGAAATCCTAGCGTTCAGGAGGGGCCGCTGATAC 19 73 0 GCGTCAGGAG 0.944526 -143 TCGGGCTTCGGCGGTGAGAAAGCGGATCTCGGTT 23 41 0 GCGTGAGAAG 0.987531 -141 GGTGGTGGCCGCGTGGCGGACAGGTTATGACTCA 28 60 0 GCGGGCGGAG 0.911391 -86 TGAAACGATGGCGCTGAAAAAGGGGGGCGGAGGA 31 114 1 GCGTGAAAAG 0.741317 -36 AAAAGGGGGGCGGAGGAGAATGAGAACCG 31 131 1 CGGGGAGAAG 0.701484 -19 CAATCCACGCGCGCTGACAATTGGCAGCACGATG 32 40 0 GCGTGACAAG 0.948781 -32 TACCACCGTTGATACAACGACGGTTTCGT 36 67 0 CCGTGATACG 0.722265 -19 CCGTGAAGTCCCGATGACAATGCGTCATAGCTAA 40 16 1 CCGTGACAAG 0.866668 -70 CGGTCCGCGGGGATTATCCGGGCGTCGATG 41 107 0 GCGGGATTAG 0.480606 -20 TGGGTACTCTGCGAGGATGACGGGTCGCGTAGGG 47 29 0 GCGGGATGAG 0.927991 -62 CCAGTACTGTGCGGTCACAACGAGTGCGAGAGGA 47 60 1 GCGTCACAAG 0.808326 -31 TATCCGCACACGGCTGAGCAGACGCCATGCGGAT 49 232 0 CGGTGAGCAG 0.493595 -69 TTTATCCACAGCGGTAAGAATCCGACGAATGGCG 50 121 0 GCGTAAGAAG 0.700479 -180 CCGTCAACAGGCGTTGAGGCAGGCTTCCGCGCTG 50 226 0 GCGTGAGGCC 0.696021 -75 CCTGTTGACGGCGCGGACAATGCCGTACCGGTGC 50 249 1 GCGGGACAAC 0.510502 -52 CCGTACCGGTGCGGGGCGGAGAAGTCACTAGGCT 50 271 1 GCGGGCGGAG 0.911445 -30 *** ****** * Masking position 3 Map Score: 54.4505 Number of sites scoring better than the average of aligned sites = 2509 Number in coding regions = 2221 Number in noncoding regions = 288 Number of orfs with sites within 600 bp upstream = 247 Fraction of orfs with sites within 600 bp upstream = 0.0396723 Motif number 6 TTCACCTGCACACCCAACCACAAGCTAGTCGG 1 88 1 CACCAACCCA 0.696357 -213 GAATGGATCCCGCCACCCCACCTCGACCGCGG 1 160 1 CGCCCCCCCC 0.814444 -141 CGACCGCGGTGCCCACACCAACGACTACCACC 1 183 1 GCCCCACCAC 0.531343 -118 AGCGGGCCGCGCCCTGACCACAAAACGTCAAG 1 239 1 GCCCGACCCA 0.898093 -62 AAAACGTCAAGACCAGGCCCCACAAGTGCGCC 1 260 1 GACCGGCCCA 0.734305 -41 CGTCGGGCTCGACCTAACCGCCCAACTCCTTC 2 25 0 GACCAACCCC 0.916731 -276 CGTCGGGCTCGACCTAACCGCCCAACTCCTTC 2 83 0 GACCAACCCC 0.916731 -218 CGGGGTGAGCGCCACCAGCCCATCACCGGCGG 2 169 0 GCCACAGCCA 0.576954 -132 ACCATCAGCCGCCGAAACCGCCGGCAGGTGGG 4 22 0 GCCGAACCCC 0.779834 -152 GCAAACAGCGCACCAAAGCACACCATCAGCCG 4 43 0 CACCAAGCCA 0.411109 -131 AGCGGGTGGTGCCCCCACCTCATCGCTACGCT 5 32 0 GCCCCACCCA 0.966876 -196 AGCGGGTGGTGCCCCCACCTCATCGCTACGCT 5 109 0 GCCCCACCCA 0.966876 -119 AGCGGGTGGTGCCCCCACCTCATCGCTACGCT 5 186 0 GCCCCACCCA 0.966876 -42 CTCGAGCCCGTCCCGGAGCGCCTCGTCAGGCG 9 25 1 TCCCGAGCCC 0.200842 -105 CGCACCTTCGCGCAGCACCGCCACGAGTCGGC 12 82 0 CGCACACCCC 0.814621 -84 AGATTCAGCAGGCAAAACCACCA 15 2 0 GGCAAACCCC 0.878607 -79 ATACACAGCAGGCACACCCCCAGGTTTCGGGA 18 75 0 GGCAACCCCA 0.381446 -197 CACCGGTGGTCGCCGAGCCACCGACCCGGGGT 19 153 0 CGCCAGCCCC 0.942243 -63 GGTGGCGGATCCACTCGCCACCGGTGGTCGCC 19 171 0 CCACCGCCCC 0.518803 -45 TGCCGTTCCACGCCTGGGCGCAGGCACAAACC 22 37 1 CGCCGGGCCA 0.574548 -264 CTGGGCGCAGGCACAAACCGCACCAACATTGG 22 50 1 GCACAACCCA 0.516665 -251 ACACGATGAGGGCAGAACCCCAGGTGCAGTGT 22 95 0 GGCAAACCCA 0.800914 -206 TCGAGTTTGAGCACAAGGCCCAGGTCGTCGAC 24 16 1 GCACAGGCCA 0.231016 -52 AGCGCAATGCGGCAAAACCGCCG 25 2 0 GGCAAACCCC 0.878607 -32 CTGGCTTAAGGCCCGCGCCGTCAATTACAACG 26 13 1 GCCCCGCCTC 0.51139 -98 ATAACAACGTGGCCACACACCAACCGGTGTGC 26 50 0 GGCCCACACA 0.471691 -61 CCGGGCACCAGATCACACCGCCATGTCAGCCG 30 88 1 GATCCACCCC 0.424849 -213 AACGCTAACCGGCCAAGCCTCCACAGTCGCGA 30 191 0 GGCCAGCCCC 0.977545 -110 GTTAGCGTTACGCCAATCCACAGGCAGCCGTA 30 214 1 CGCCATCCCA 0.355683 -87 ACCCGCGAGCGACCGAGGCCCACCGAACGGCG 31 40 0 GACCAGGCCA 0.63232 -110 TATCACACGCGGCGCAAGCCCCAACTCGTCGC 33 65 0 GGCGAAGCCC 0.61069 -36 TTCTGTCAGTGGCCGGAGCGCCGCGACCTGGA 36 16 1 GGCCGAGCCC 0.87528 -70 ACAGGCTAGCCGCCCCGCCCCCATTCCTGCAC 37 15 1 CGCCCGCCCC 0.963547 -34 GACAGTCGTGGGCCGCGCCTCGGGTTTAGCTA 40 43 0 GGCCCGCCCG 0.805422 -43 GCGAGCCTTCGGCCTCGGCGCATCGACGCCCG 41 87 1 GGCCCGGCCA 0.922678 -40 GAGCCGCCCTGGCGGCGCCTCCGCTAGATGAC 42 146 1 GGCGCGCCCC 0.68008 -49 TTTTGCGTCTGCTCGCGCCGCCACCGACAGGG 44 68 1 GCTCCGCCCC 0.667389 -29 ATGCCAAACCTCCTCATGAGCCA 46 96 0 TGCCAACCCC 0.710597 -13 GACGCTGTGACGCAGCACCGCATCTCGGTTGA 49 269 1 CGCACACCCA 0.709542 -32 **** **** ** Masking position 9 Map Score: 47.5618 Number of sites scoring better than the average of aligned sites = 13657 Number in coding regions = 12812 Number in noncoding regions = 845 Number of orfs with sites within 600 bp upstream = 629 Fraction of orfs with sites within 600 bp upstream = 0.101028 Motif number 7 CGGCGGTTTCGGCGGCTGATGGTGTGCTTT 4 31 1 GGCGGCTGAT 0.934234 -143 TGTGACGGTGTGCGGCTCCGACGGTAGGG 6 38 1 TGCGGCTCCG 0.81147 -19 TCGTGGGAAAGGCGTCTCCCAGTTCATCGC 9 98 0 GGCGTCTCCC 0.934574 -32 CAACACCGCGGGCGTCCGCCACCTAGACTC 12 129 1 GGCGTCCGCC 0.608459 -37 TGTGCGACTCTGTGTCTGCTCGCGGGGTGC 16 18 0 TGTGTCTGCT 0.846348 -113 GATGCGACTCTGTGTCTGCTCGCCCAGCAC 16 62 1 TGTGTCTGCT 0.846348 -69 CACGCGACCCGGCGGCTCACCCTCCCACCC 16 89 1 GGCGGCTCAC 0.862547 -42 TGCAGCTTCCTGTGACTGCTCCCGAAACCT 18 56 1 TGTGACTGCT 0.604925 -216 AACCTGGGGGTGTGCCTGCTGTGTATGCAC 18 81 1 TGTGCCTGCT 0.562739 -191 ATGGGGCCAATGTGGCTGATGTGGCTAAAC 22 214 1 TGTGGCTGAT 0.707536 -87 TGGCCGCCCGTACGTCTGCCGC 29 3 0 TACGTCTGCC 0.601724 -74 ACAAGGTCTTGGCGGCTGACATGGCGGTGT 30 102 0 GGCGGCTGAC 0.924988 -199 TGTGTTTGCGTACGGCTGCCTGTGGATTGG 30 226 0 TACGGCTGCC 0.796432 -75 CATACGTTCGGGCGACTGCCCGGGCAGTTT 35 13 0 GGCGACTGCC 0.886662 -28 TGGTAGCTACGCCGGCTGCTGCGTGCCGGC 42 106 1 GCCGGCTGCT 0.824728 -89 GCGCCGCCAGGGCGGCTCCCAGTGTCCCGC 42 134 0 GGCGGCTCCC 0.973178 -61 GAGCCGCCCTGGCGGCGCCTCCGCTAGATG 42 146 1 GGCGGCGCCT 0.786727 -49 TGGGCGATTTTGCGTCTGCTCGCGGGTGGG 44 17 0 TGCGTCTGCT 0.962832 -80 AGGGCGATTTTGCGTCTGCTCGCGCCGCCA 44 61 1 TGCGTCTGCT 0.962832 -36 CCCAACGTGGTGTGGCTCATGAGGAGGTTT 46 84 1 TGTGGCTCAT 0.55032 -25 TCGCTTCGGCTGCGGCTCCTGGTCGGACAG 48 27 1 TGCGGCTCCT 0.971379 -44 TGGTACCAGTAGCGGCTGCTGGCGACCGGG 49 107 0 AGCGGCTGCT 0.864598 -194 GCAGACGCCATGCGGATCCTATGTGCGCGC 49 219 0 TGCGGATCCT 0.540251 -82 GGATCCGCATGGCGTCTGCTCAGCCGTGTG 49 230 1 GGCGTCTGCT 0.969893 -71 ********** Masking position 4 Map Score: 33.1604 Number of sites scoring better than the average of aligned sites = 4178 Number in coding regions = 3802 Number in noncoding regions = 376 Number of orfs with sites within 600 bp upstream = 246 Fraction of orfs with sites within 600 bp upstream = 0.0395117 Motif number 8 TTCCTTGTCTGCCAGCCTTTCCCGACTAGCTTG 1 108 0 GCCGCTTTCC 0.596679 -193 GCTGCGCAGCGCGTTCATACCGCCGAGGTGGTC 3 65 0 GCGTATACGC 0.275725 -92 GGACCAAAATGCCCGAATTCTCCTCGGTCCGCT 3 95 0 GCCGATTCCC 0.943069 -62 GGTCATCAGCGCCACTCTCCCCCGCAAGCGGGT 5 57 0 GCCCCTCCCC 0.952905 -171 GGTCATCAGCGCCACTCTCCCCCGCAAGCGGGT 5 134 0 GCCCCTCCCC 0.952905 -94 CAGCGCCACTCTCCCCCGCAAGCGGGT 5 211 0 GCCCCTCCCC 0.952905 -17 CTAACAGTCTGCCAGGAATCGCCAAATCAGCTT 7 58 0 GCCGAATCCC 0.631707 -84 AAAGCTCGTTGCCAGTAGTCTGCTAACAGTCTG 7 80 0 GCCGAGTCGC 0.958458 -62 GCGCAGCACCGCCACGAGTCGGCGCCGCACAAT 12 72 0 GCCCAGTCGC 0.887028 -94 GAGTCTAGGTGGCGGACGCCCGCGGTGTTGGCT 12 126 0 GGCGCGCCGC 0.603388 -40 GGGTTGGATTGCCCGCCTCCTGCTCATCGCGCT 13 34 0 GCCGCTCCGC 0.976855 -54 GCCCGCCGATGCCAGCATCCTGCCCGCTGCTGG 14 45 1 GCCGATCCGC 0.986174 -117 CCCGCGCGCACCCCGCGAGCAGACAC 16 4 1 GCGGACCCGC 0.555326 -127 GGCGAACTTGGCGTGCCGTCGCCCTTGGCCGGG 18 179 0 GCGGCGTCCC 0.757214 -93 AAGTGAGTATGCCTTGATTGTCCGCGAGCGGAA 21 13 1 GCCTATTGCC 0.34254 -103 CGCCTCTCAGGCCAGTCTCAGGCGCTGCGACGA 22 273 1 GCCGCTCAGC 0.904741 -28 CGGGCGGGATGTCGGGCTTCGGCGGTGAGAAAG 23 53 0 GTCGCTTCGC 0.574181 -129 GACGGCGCGGGCCTTAAGCCAGCT 26 2 0 GCCTAGCCGC 0.949527 -109 CGTACGGGCGGCCACGCTCAACCAACAACGAAA 29 19 1 GCCCCTCACC 0.763892 -58 GTGCGAAAGAGCCGTCATTCGCCTAGAATCCGC 30 17 1 GCCTATTCCC 0.851913 -284 TGTGAAACCTGCCGGCCGCTAGCACCCCGGGCC 30 263 0 GCCGCGCTGC 0.797802 -38 AGCAGGCGATGCCGTCATCGTGCTGCCAATTGT 32 25 1 GCCTATCGGC 0.716048 -47 TTTCCAGGTCGCGGCGCTCCGGCCACTGACAGA 36 17 0 GCGCCTCCGC 0.878539 -69 GCTACACTTAGCCGTGATCCAGCGCGAGCCTTC 41 64 1 GCCTATCCGC 0.965522 -63 GTGATCCAGCGCGAGCCTTCGGCCTCGGCGCAT 41 77 1 GCGGCTTCGC 0.902716 -50 GCGCATCGACGCCCGGATAATCCCCGCGGACCG 41 104 1 GCCGATAACC 0.314906 -23 CACGAATGACGCCGTGATCACGCCGTTCAACGT 42 57 0 GCCTATCAGC 0.816303 -138 GGGTATTTGCCCTAATCAAGCAAGAAACGCC 43 9 1 GCCTATCAGC 0.817643 -61 CACTGTAGCCGCCGTCGGTCAGCCCCGCAGG 45 9 0 GCCTGGTCGC 0.473219 -96 GCTTCAGCAGCCCGGTCGCCAGCAGCCGCTACT 49 97 1 CCCGCGCCGC 0.748066 -204 GTGGGGTACCGCCCGGATCCGGCCCGCTGGCAG 49 155 1 GCCGATCCGC 0.976766 -146 CATAGGATCCGCATGGCGTCTGCTCAGCCGTGT 49 226 1 GCAGCGTCGC 0.500693 -75 CAGGCGTTGAGGCAGGCTTCCGCGCTGGATTGG 50 220 0 GGCGCTTCGC 0.786224 -81 CATTGTCCGCGCCGTCAACAGGCGTTGAGGCAG 50 238 0 GCCTAACAGC 0.29961 -63 *** * **** ** Masking position 13 Map Score: 47.0348 Number of sites scoring better than the average of aligned sites = 8590 Number in coding regions = 7945 Number in noncoding regions = 645 Number of orfs with sites within 600 bp upstream = 482 Fraction of orfs with sites within 600 bp upstream = 0.0774173 Motif number 9 GCGCAGCGCGATGAGAAGGA 2 1 1 GCGCAGCGCG 0.891729 -300 ATCGCGCTGCGCGCTCTGCATCGTCGTCGG 2 51 0 GCGCTCTGCA 0.99068 -250 ATCGCGCTGCGCGCTCTGCATCGTCGTCGG 2 109 0 GCGCTCTGCA 0.99068 -192 CGGTATGAACGCGCTGCGCAGCGGACCGAG 3 76 1 GCGCTGCGCA 0.969716 -81 CCTCATCGCTACGCTCTGCATCGTCGTCGG 5 17 0 ACGCTCTGCA 0.930167 -211 ATCGTCGTCGGCGCAGGTCATCAGCGCCAC 5 75 0 GCGCAGGTCA 0.802644 -153 CCTCATCGCTACGCTCTGCATCGTCGTCGG 5 94 0 ACGCTCTGCA 0.930167 -134 ATCGTCGTCGGCGCAGGTCATCAGCGCCAC 5 152 0 GCGCAGGTCA 0.802644 -76 CCTCATCGCTACGCTCTGCATCGTCGTCGG 5 171 0 ACGCTCTGCA 0.930167 -57 TATTCACGGCGCGCCGTGGATTGAGCGGCA 7 21 1 GCGCCGTGGA 0.637644 -121 ACGGGCTCGAGCGCTGGGCGACAAT 9 6 0 GCGCTGGGCG 0.951338 -124 ATCGCGCTGCGCGCTCTGCATCGTCGCCGG 13 12 0 GCGCTCTGCA 0.99068 -76 CGCGCTGCGCGCTCTGCATCGTCGCCGG 13 70 0 GCGCTCTGCA 0.99068 -18 CGGCGCAGGGTACTACATGCTC 19 3 1 GCGCAGGGTA 0.821507 -213 GGAACGTGGTGCACACTGCACCTGGGGTTC 22 83 1 GCACACTGCA 0.790874 -218 GACCCGTCCAGCGCAATGCGGCAAAACCGC 25 13 0 GCGCAATGCG 0.825371 -21 GCGGCATGCGCAGTGCAGGAATGGGGG 37 32 0 GCGCAGTGCA 0.989705 -17 CGGCGCAGTGTAGCTCCGTATT 39 75 0 GCGCAGTGTA 0.899606 -12 TCCTATGTGCGCGCTATGAAACCCGATTTG 49 203 0 GCGCTATGAA 0.492719 -98 ********** Masking position 4 Map Score: 30.365 Number of sites scoring better than the average of aligned sites = 1987 Number in coding regions = 1845 Number in noncoding regions = 142 Number of orfs with sites within 600 bp upstream = 119 Fraction of orfs with sites within 600 bp upstream = 0.0191134 Motif number 10 CTCGACCGCGGTGCCCACACCAACGACTAC 1 181 1 GTGCCCACAC 0.866534 -120 CAAGCGGGTGGTGCCCCCACCTCATCGCTA 5 36 0 GTGCCCCCAC 0.992818 -192 CAAGCGGGTGGTGCCCCCACCTCATCGCTA 5 113 0 GTGCCCCCAC 0.992818 -115 CAAGCGGGTGGTGCCCCCACCTCATCGCTA 5 190 0 GTGCCCCCAC 0.992818 -38 CCGAAGATGTTCCCCCCCAAGAAGTCGT 10 9 1 GTTCCCCCCC 0.944191 -34 GACGACTGGGGTTCACCCCACGCGGCCACC 14 12 1 GTTCACCCCA 0.188117 -150 GGTGGTCGCCGAGCCACCGACCCGGGGTCG 19 151 0 GAGCCACCGA 0.361531 -65 GTGGCGAGTGGATCCGCCACCACGACCCCC 19 182 1 GATCCGCCAC 0.818934 -34 TGTGCACCACGTTCCACCAATGTTGGTGCG 22 68 0 GTTCCACCAA 0.691483 -233 ACCAACCGGTGTGCGGCCACGTTGTAATTG 26 34 0 GTGCGGCCAC 0.842133 -77 GTCGGCGAGTTTGCCGCCACGGTCGATGAA 39 43 0 TTGCCGCCAC 0.789882 -44 GCGGCTCCCAGTGTCCCGCCGGCACGCAGC 42 123 0 GTGTCCCGCC 0.536015 -72 GGTGTCACCACATCGGGACAA 43 59 0 GTGTCACCAC 0.783199 -11 GTGCCTCCCACCCGCGAGCA 44 1 1 GTGCCTCCCA 0.713647 -96 GCGTCTGCTCGCGCCGCCACCGACAGGGCC 44 72 1 GCGCCGCCAC 0.920031 -25 GGATCCCTGTGAGCCCCCAAAGAAGGATGA 45 77 1 GAGCCCCCAA 0.931055 -28 ACCTCCTCATGAGCCACACCACGTTGGGAT 46 82 0 GAGCCACACC 0.439791 -27 GGCTCCGAACGTGCCCCAAATCGGGTTTCA 49 187 1 GTGCCCCAAA 0.806913 -114 CGTGCTGGACGTGCCGCGACCGGGCGCGCC 50 191 1 GTGCCGCGAC 0.92554 -110 ********** Masking position 7 Map Score: 15.7263 Number of sites scoring better than the average of aligned sites = 2494 Number in coding regions = 2261 Number in noncoding regions = 233 Number of orfs with sites within 600 bp upstream = 203 Fraction of orfs with sites within 600 bp upstream = 0.0326052 Motif number 11 TTGGGTGTGCAGGTGAAGGTGAGTTTGTCGA 1 74 0 AGGTGAAGTG 0.636859 -227 GCGCAGCGCGATGAGAAGGAGTTGGGCGGTT 2 11 1 ATGAGAAGAG 0.951487 -290 GCGCAGCGCGATGAGAAGGAGTTGGGCGGTT 2 69 1 ATGAGAAGAG 0.951487 -232 GCGCAGCGCGATGAGAAATAGCACTCGTGGA 2 127 1 ATGAGAATAG 0.646401 -174 CAGCGGACCGAGGAGAATTCGGGCATTTTGG 3 94 1 AGGAGAATCG 0.791766 -63 TAGACAGATCAGGAGAAAGCG 6 1 0 AGGAGAAGCG 0.976073 -56 CGGCAGCCCGAGGAGAACGCGGCA 8 31 1 AGGAGAAGCG 0.976073 -14 CGTAAGCGTCGTGTCAATGCGG 11 2 0 GTGTCAAGCG 0.696466 -56 GCGCAGCGCGATGAGCAGGAGGCGGGCAATC 13 30 1 ATGAGCAGAG 0.70013 -58 AAACTCCATAGTGACAACGTGCGTAGTCAGA 15 51 0 GTGACAAGTG 0.614645 -30 GGATGCTCCTTGGACAAAGCGCGCCGTCGAC 19 37 1 TGGACAAGCG 0.780095 -179 TGTCGCGTGGTGGTCAACGAGG 20 2 0 TGGTCAAGAG 0.325509 -58 GGCTTCGGCGGTGAGAAAGCGGATCTCGGTT 23 41 0 GTGAGAAGCG 0.955891 -141 CGCCAGGTGCGAAAGAGCCGTCATTCG 30 7 1 GTGCGAAGAG 0.633612 -294 AGGGGGGCGGAGGAGAATGAGAACCG 31 134 1 AGGAGAAGAG 0.957112 -16 TGAAGTCCCGATGACAATGCGTCATAGCTAA 40 19 1 ATGACAAGCG 0.938517 -67 CAGGCTGTCGATGAGAACGCATTGACGGGCG 50 42 1 ATGAGAAGCA 0.640031 -259 ******* *** Masking position 7 Map Score: 10.8168 Number of sites scoring better than the average of aligned sites = 482 Number in coding regions = 433 Number in noncoding regions = 49 Number of orfs with sites within 600 bp upstream = 59 Fraction of orfs with sites within 600 bp upstream = 0.00947639 Motif number 12 TCGACCAGTGGGCAACCGGCGGCTCAACCGA 1 41 1 GGCAACCGCG 0.949738 -260 GCCACCCCACCTCGACCGCGGTGCCCACACC 1 171 1 CTCGACCGGG 0.605299 -130 GCGGTTAGGTCGAGCCCGACGACGATGCAGA 2 36 1 CGAGCCCGCG 0.948708 -265 GCGGTTAGGTCGAGCCCGACGACGATGCAGA 2 94 1 CGAGCCCGCG 0.948708 -207 TGGAGGTCAAGACGCCCGCCGGTGATGGGCT 2 154 1 GACGCCCGCG 0.95924 -147 CATCAGCCGCCGAAACCGCCGGCAGGTGGGA 4 21 0 CGAAACCGCG 0.87574 -153 CGCTTGCGGGGGAGAGTGGCGCTGATGACCT 5 60 1 GGAGAGTGCG 0.759608 -168 CGCTTGCGGGGGAGAGTGGCGCTGATGACCT 5 137 1 GGAGAGTGCG 0.759608 -91 CGCTTGCGGGGGAGAGTGGCGCTG 5 214 1 GGAGAGTGCG 0.759608 -14 GGCAGCCCGAGGAGAACGCGGCA 8 32 1 GGAGAACGGG 0.564203 -13 ACGATAACGTGCCGCCTGACGAGGCGCTCCG 9 38 0 GCCGCCTGCG 0.844537 -92 TGCCGCTACCGTCACATGGCGCGATGAACTG 9 78 1 GTCACATGCG 0.246912 -52 TCCCGACCTTGGAAAATGCCGTAAGCGTCGT 11 21 0 GGAAAATGCG 0.574083 -37 CTAGGTGGCGGACGCCCGCGGTGTTGGCTGC 12 124 0 GACGCCCGGG 0.872406 -42 GGACGACTGGGGTTCACCCCAC 14 2 1 GACGACTGGG 0.864276 -160 CGCGGCCACCGGGGCCCGCCGATGCCAGCAT 14 32 1 GGGGCCCGCG 0.764389 -130 AGAGTCGCATCAAAACCGCCGATTTTGTGCG 16 42 0 CAAAACCGCG 0.769827 -89 GACTGCTCCCGAAACCTGGGGGTGTGCCTGC 18 69 1 GAAACCTGGG 0.546738 -203 TCGGTGGCTCGGCGACCACCGGTGGCGAGTG 19 161 1 GGCGACCACG 0.550677 -55 GCTTTCAACGTAGCCTGTCGGTCACACAAG 21 96 0 GTAGCCTGCG 0.79261 -20 CGCAATGCGGCAAAACCGCCG 25 1 0 CAAAACCGCG 0.769827 -33 ACGGCTCTTTCGCACCTGGCG 30 1 0 CGCACCTGCG 0.905588 -300 GCGGATTCTAGGCGAATGACGGCTCTTTCGC 30 19 0 GGCGAATGCG 0.867889 -282 AAAGGCATGGGACGCCCGACGTTTACGGTTT 30 157 0 GACGCCCGCG 0.95924 -144 GCCTTTCGGTCGCGACTGTGGAGGCTTGGCC 30 182 1 CGCGACTGGG 0.895614 -119 CCTTGTGTGTGAAACCTGCCGGCCGCTAGCA 30 272 0 GAAACCTGCG 0.805895 -29 CCAACGCCAAGCCGACCGGCGTGGCGTCGA 33 10 0 GCCGACCGCG 0.872502 -91 CATACGTTCGGGCGACTGCCCGGGCAGTTTG 35 12 0 GGCGACTGCC 0.609657 -29 GAGAGATGTACGAAACCGTCGTTGTATCAAC 36 58 1 CGAAACCGCG 0.875739 -28 GGCGGGGCGGCTAGCCTGTCGGG 37 3 0 CTAGCCTGCG 0.709638 -46 AGGCGCGGCCCACGACTGTCGCCTCATGGAC 40 55 1 CACGACTGCG 0.933405 -31 CGCCAGGAATCACGAATGACGCCGTGATCAC 42 69 0 CACGAATGCG 0.665956 -126 CACATCGGGACAAAACTGGCGCACCACACGG 43 41 0 CAAAACTGCG 0.741987 -29 CAGCCAGGCCCACAACTGTGGATAACAGCGC 50 70 0 CACAACTGGG 0.588897 -231 GTAAGAATCCGACGAATGGCGTTAACACCGG 50 111 0 GACGAATGCG 0.757139 -190 ATAAAGCTGTGGAAACTGTGGATAGTCGTAG 50 150 1 GGAAACTGGG 0.733555 -151 ******** ** Masking position 8 Map Score: 49.7977 Number of sites scoring better than the average of aligned sites = 15842 Number in coding regions = 14650 Number in noncoding regions = 1192 Number of orfs with sites within 600 bp upstream = 714 Fraction of orfs with sites within 600 bp upstream = 0.11468 Motif number 13 CACCGCGGTCGAGGTGGGGTGGCGGGATCC 1 164 0 GAGGTGGGGT 0.711578 -137 ACGTGGCGCACTTGTGGGGCCTGGTCTTGA 1 266 0 CTTGTGGGGC 0.810919 -35 CGGTGATGGGCTGGTGGCGCTCACCCCGTT 2 173 1 CTGGTGGCGC 0.90379 -128 CGAGGCGCTCCGGGACGGGCTCGAGCGCTG 9 20 0 CGGGACGGGC 0.911339 -110 TCCCACGACGCTGGAGGGGC 9 120 1 CTGGAGGGGC 0.985177 -10 GCGCGATGAGCAGGAGGCGGGCAATCCAAC 13 35 1 CAGGAGGCGG 0.717593 -53 ACACAGATAACTGGAGGCGCC 14 151 1 CTGGAGGCGC 0.968934 -11 TCCTAGCGTTCAGGAGGGGCCGCTGATACT 19 72 0 CAGGAGGGGC 0.98361 -144 CATTGGCCCCATGGACGGGTTTTGTTTGGT 22 196 0 ATGGACGGGT 0.709441 -105 GACCGGGCGGGATGTCGGGCTTCGGCGGTG 23 59 0 GATGTCGGGC 0.637604 -123 CGTCGACAACGATGACGGGATTGTGCTGGA 24 41 1 GATGACGGGA 0.262313 -27 CCGCATTGCGCTGGACGGGTCG 25 22 1 CTGGACGGGT 0.93088 -12 GCCTGCTCTCAAGGAGGGGCC 32 2 0 AAGGAGGGGC 0.915828 -70 GGGAGCCGCCCTGGCGGCGCCTCCGCTAGA 42 144 1 CTGGCGGCGC 0.886208 -51 GGCCCTGTCGGTGGCGGCGCGAGCAGACGC 44 72 0 GTGGCGGCGC 0.811607 -25 ACTCTGCGAGGATGACGGGTCGCGTAGGGA 47 28 0 GATGACGGGT 0.590392 -63 ACGAGTGCGAGAGGACGGGTGC 47 79 1 GAGGACGGGT 0.870589 -12 CCTGTCCGACCAGGAGCCGCAGCCGAAGCG 48 28 0 CAGGAGCCGC 0.635903 -43 ATGAGAACGCATTGACGGGCGCTGTTATCC 50 52 1 ATTGACGGGC 0.679503 -249 CTGTGTCGTGCTGGACGTGCCGCGACCGGG 50 185 1 CTGGACGTGC 0.768654 -116 ********** Masking position 4 Map Score: 16.1725 Number of sites scoring better than the average of aligned sites = 3944 Number in coding regions = 3675 Number in noncoding regions = 269 Number of orfs with sites within 600 bp upstream = 249 Fraction of orfs with sites within 600 bp upstream = 0.0399936 Motif number 14 CAGAGGCTACCAACGTGGCGCACTTGTGGGGCC 1 275 0 CAATGCGCAC 0.951226 -26 GGCAACGAAGCCGACAAACACCTGA 2 286 0 CAAAGCCGAC 0.915954 -15 CATCGTGGACCAAAATGCCCGAATTCTCCTCGG 3 101 0 CAATCCCGAA 0.638419 -56 GTGCTAAAGCCTACGTTCCCGACCTTGGAAAAT 11 35 0 CTATCCCGAC 0.796168 -23 CCGCACAATGCAGCAAGGCCCACATCGTACTGA 12 48 0 CAGAGCCCAC 0.897547 -118 CTCCGAGAGTCTAGGTGGCGGACGCCCGCGGTG 12 132 0 CTATGCGGAC 0.833387 -34 GCTGGCAGCTCAACATGCCGCGCGAAGCCCAAA 14 73 1 CAATCCGCGC 0.814942 -89 GACGGCACGCCAAGTTCGCCGACCGTTAACCTA 18 192 1 CAATGCCGAC 0.96643 -80 ACCCCAGGTGCAGTGTGCACCACGTTCCACCAA 22 78 0 CAGTCACCAC 0.340055 -223 GCGATTTGTGCTGCTTGGCGGAAGAGTTCTCGT 22 150 0 CTGTGCGGAA 0.317943 -151 CCGTCAATTACAACGTGGCCGCACACCGGTTGG 26 30 1 CAATGCCGCA 0.316496 -81 GCGGTGGTGGCCGCGTGGCGGACAGGTTATGAC 28 63 0 CCGTGCGGAC 0.696685 -83 GAAATTCAGCCAAATAACTCCACGGAAACGGAA 29 48 1 CAAACTCCAC 0.160622 -29 CGCCAATCCACAGGCAGCCGTACGCAAACACAC 30 224 1 CAGACCGTAC 0.265918 -77 CCCGACAGGCTAGCCGCCCCGCCCCCAT 37 6 1 CAGTGCCGCC 0.837738 -43 ACCGTGGCGGCAAACTCGCCGACAGAATACGGA 39 50 1 CAATGCCGAC 0.96643 -37 TATCCCACGGCAGATAGCCGGGCAATCGGGCTT 41 21 1 CAGACCGGGC 0.683037 -106 ACATCGGGACAAAACTGGCGCACCACACGGGCG 43 38 0 AAATGCGCAC 0.383333 -32 CGAGCAGACGCAAAATCGCCCATTTTCATGACG 44 25 1 CAATGCCCAT 0.450984 -72 CGTACCTAGGCTAAGTAGCCCGCTCGGATCCCT 45 52 1 CTATGCCCGC 0.607153 -53 CCGAAGCGACCAAATTCGCGGACTG 48 3 0 CAATGCGGAC 0.961136 -68 GCGAGGACGACAACCTGTCCGACCAGGAGCCGC 48 38 0 CAATTCCGAC 0.603441 -33 ACGCTTGAGGCAGCGTCCCGGACCAACGCCAAT 49 51 0 CAGTCCGGAC 0.944171 -250 GTCACAGCGTCAAGTATCCGCACACGGCTGAGC 49 247 0 CAAACCGCAC 0.832009 -54 CTCCATCCGTCAGCCAGGCCCACAACTGTGGAT 50 78 0 CAGAGCCCAC 0.897547 -223 GGCGTTGAGGCAGGCTTCCGCGCTGGATTGGGC 50 218 0 CAGTCCGCGC 0.817817 -83 *** * ****** Masking position 1 Map Score: 15.2108 Number of sites scoring better than the average of aligned sites = 4443 Number in coding regions = 4134 Number in noncoding regions = 309 Number of orfs with sites within 600 bp upstream = 297 Fraction of orfs with sites within 600 bp upstream = 0.0477032 Motif number 15 AACGTCAAGACCAGGCCCCACAAGTGCGCC 1 262 1 CCAGGCCCCA 0.631677 -39 GCGCAGCGCGATGAGAAGGAG 2 2 1 CGCAGCGCGA 0.917541 -299 ATGCAGAGCGCGCAGCGCGATGAGAAGGAG 2 60 1 CGCAGCGCGA 0.917541 -241 ATGCAGAGCGCGCAGCGCGATGAGAAATAG 2 118 1 CGCAGCGCGA 0.917541 -183 GGCCGGTTCACCAAGGCCGATACATGGGCG 3 24 0 CCAAGGCCGA 0.935412 -133 CCCTAGCGCGGCAAGGCCAAAATCGGACAA 4 123 0 GCAAGGCCAA 0.439123 -51 GCCTTGCCGCGCTAGGGCGACGTTCACCGG 4 136 1 GCTAGGGCGA 0.438897 -38 TAATCGGATCGGCAGCCCGAGGAGAACGCG 8 22 1 GGCAGCCCGA 0.976787 -23 GCACAATGCAGCAAGGCCCACATCGTACTG 12 49 0 GCAAGGCCCA 0.799034 -117 CCTAGACTCTCGGAGGCCGGTAGGAC 12 150 1 CGGAGGCCGG 0.727396 -16 ATGCAGAGCGCGCAGCGCGATGAGCAGGAG 13 21 1 CGCAGCGCGA 0.917541 -67 GGCAATCCAACCCAGCCCGGCGACGATGCA 13 54 1 CCCAGCCCGG 0.971467 -34 ACATGCCGCGCGAAGCCCAAACTTGATGCT 14 85 1 CGAAGCCCAA 0.451062 -77 TCGCCCAGCACGCGACCCGGCGGCTCACCC 16 81 1 CGCGACCCGG 0.377414 -50 TCAACCCCGGCCAAGGGCGACGGCACGCCA 18 174 1 CCAAGGGCGA 0.79295 -98 GCTCCGCAAAGCAGCCCGATGGCCCGACG 20 41 0 AGCAGCCCGA 0.840581 -19 TTCTCACCGCCGAAGCCCGACATCCCGCCC 23 55 1 CGAAGCCCGA 0.938272 -127 GAGTTTGAGCACAAGGCCCAGGTCGTCGAC 24 18 1 ACAAGGCCCA 0.332539 -50 CCCGGCCCGACGACTCAGGA 27 1 1 CCCGGCCCGA 0.945249 -26 GCCGAAGTGTGCTAGCCCGGGCACCAGATC 30 72 1 GCTAGCCCGG 0.715698 -229 GAAAGGCATGGGACGCCCGACGTTTACGGT 30 159 0 GGACGCCCGA 0.501718 -142 CCGCTAGCACCCCGGGCCGACCCTGTGTGT 30 251 0 CCCGGGCCGA 0.920526 -50 CCGCGAGCGACCGAGGCCCACCGAACGGCG 31 40 0 CCGAGGCCCA 0.646603 -110 GCTGACAATTGGCAGCACGATGACGGCATC 32 32 0 GGCAGCACGA 0.554082 -40 TCGACGCCACGCCGGTCGGCTTGGC 33 6 1 GCCACGCCGG 0.473865 -95 GTGGGCCAACGCCAAGCCGACCGGCGTGGC 33 16 0 GCCAAGCCGA 0.778179 -85 CACACGCGGCGCAAGCCCCAACTCGTCGCG 33 64 0 GCAAGCCCCA 0.855853 -37 GACCTGGAAAGGCAACCCGAGAGATGTACG 36 40 1 GGCAACCCGA 0.786411 -46 GCGTCACCGGGCAAGCCCGATTGCCCGGCT 41 36 0 GCAAGCCCGA 0.955805 -91 CGTCGATGCGCCGAGGCCGAAGGCTCGCGC 41 85 0 CCGAGGCCGA 0.869529 -42 CGGAGGCGCCGCCAGGGCGGCTCCCAGTGT 42 139 0 GCCAGGGCGG 0.857998 -56 GCCGCCGTCGGTCAGCCCCGCAGG 45 5 0 GTCAGCCCCG 0.27141 -100 TGTGGAAGTCGCCGACCCGG 49 1 0 GCCGACCCGG 0.463103 -300 GATTTGCTTCAGCAGCCCGGTCGCCAGCAG 49 92 1 AGCAGCCCGG 0.750311 -209 CCATCCGTCAGCCAGGCCCACAACTGTGGA 50 79 0 GCCAGGCCCA 0.916714 -222 ********** Masking position 8 Map Score: 44.4681 Number of sites scoring better than the average of aligned sites = 11241 Number in coding regions = 10509 Number in noncoding regions = 732 Number of orfs with sites within 600 bp upstream = 531 Fraction of orfs with sites within 600 bp upstream = 0.0852875