AlignACE version 2.2 July 7, 1998 alignACE -a/home/amcguire/genomes/ORF_rpxx.txt -z/home/amcguire/genomes/rpxx.fna -intrC_rpxx_opreg_300.orf -g0.290 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.29 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 RP122 98 HFLK PROTEIN (hflK) #2 RP123 143 HFLC PROTEIN (hflC) #3 RP124 30 PROBABLE PERIPLASMIC SERINE PROTEASE DO-LIKE PRECURSOR (htrA) #4 RP125 104 unknown #5 RP126 137 SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT (sdhC) #6 RP127 158 SUCCINATE DEHYDROGENASE HYDROPHOBIC MEMBRANE ANCHOR PROTEIN (sdhD) #7 RP128 133 SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT (sdhA) #8 RP129 119 PUTATIVE GLUTAMINE TRANSPORT SYSTEM PERMEASE PROTEIN GLNP (glnP) #9 RP150 164 AMINO-ACID ABC TRANSPORTER BINDING PROTEIN (yqiX) #10 RP151 167 GLUTAMYL-tRNA AMIDOTRANSFERASE SUBUNIT B (gatB) #11 RP153 300 GLUTAMYL-tRNA AMIDOTRANSFERASE SUBUNIT C (gatC) #12 RP562 300 NITROGEN ASSIMILATION REGULATORY PROTEIN NTRX (ntrX) Motif number 1 TGCTTTTTTATATTATTTTAAGATTAAGTG 1 78 0 TATTATTTTA 0.959268 -21 TCATTTAGGATAAGATTTTATCTCATTGGA 2 49 1 TAAGATTTTA 0.863183 -95 GCTTTTTTAGTATGATATTATAAAATAATA 2 113 1 TATGATATTA 0.842947 -31 TAATATTCCTTATTATTTTATAATATCATA 2 123 0 TATTATTTTA 0.959268 -21 TAAGTCATAGTATGAAATTTAA 4 3 0 TATGAAATTT 0.550652 -102 TTCAGAAAATTATTATATTTGTATTTCTTG 5 41 0 TATTATATTT 0.926414 -97 GACACTATAGTATTAAATTTTATTATTTTT 5 105 1 TATTAAATTT 0.711138 -33 TATTAAATTTTATTATTTTTATATTGAATA 5 115 1 TATTATTTTT 0.965631 -23 AACGAATTTTTAATTTTTTAAAAATAGTAT 6 41 1 TAATTTTTTA 0.788174 -118 TCAATTAATTTTTTACTTTTGATAC 7 119 0 TAATTTTTTA 0.788174 -15 AATTATATAGTATTATTTTATTTATATCAC 8 13 1 TATTATTTTA 0.959268 -107 ACAGGAAGTATAATTTTTTAGCTGCTGCAG 8 61 1 TAATTTTTTA 0.788174 -59 ATTTTCTTTGTATTTATTTTTTGTACTGGA 9 17 0 TATTTATTTT 0.627841 -148 AAACTTAAAACATTATTTTT 9 155 1 CATTATTTTT 0.895972 -10 TGTCTTTTGCTATGATATTAATTTGGAATC 10 47 1 TATGATATTA 0.842947 -121 ATAATGATCTTAAGATTTTTTTACCTATTT 11 15 0 TAAGATTTTT 0.882552 -286 AACTACAAGATATTATTTTTAATTAAAACA 11 105 1 TATTATTTTT 0.965631 -196 TTCTATATCCTATTTTATTTCATTAAGTCA 11 203 0 TATTTTATTT 0.798372 -98 AGTTTTATTATTTTTACGTAAAAAT 11 286 0 TATTATTTTT 0.965631 -15 TCAGTATTCTTATTATTTTATGTCACAAAC 12 24 1 TATTATTTTA 0.959268 -277 CCACATAATTCATTATATTTATAACACTAT 12 84 1 CATTATATTT 0.796271 -217 TATAAATCTATAAGATTTTAATTTTTAAAT 12 128 0 TAAGATTTTA 0.863183 -173 TAAAAACAACTAATAAATTTATATAAGACT 12 156 1 TAATAAATTT 0.556408 -145 ATTTTTGTCACAATATTTTTTGTCCATAAT 12 200 0 CAATATTTTT 0.822428 -101 AAGAAAGCAACATTTTTTTATAACATTTTT 12 224 0 CATTTTTTTA 0.69714 -77 TTTAGGTTTTTAATATTTTTAAGGTAAATT 12 278 1 TAATATTTTT 0.936784 -23 ********** Masking position 8 Map Score: 37.5438 Number of sites scoring better than the average of aligned sites = 1218 Number in coding regions = 813 Number in noncoding regions = 405 Number of orfs with sites within 600 bp upstream = 207 Fraction of orfs with sites within 600 bp upstream = 0.0332477 Motif number 2 TGATTATATATATAATAGTATATAACGTCAAGTT 1 46 0 TAAATATATA 0.808314 -53 TTAATCTTAAAATAATATAAAAAAGCAA 1 81 1 AAAATAAAAA 0.919727 -18 GATATTATAAAATAATAAGGAATATTAA 2 126 1 AAAATAAATA 0.961865 -18 GCTAAGCAGTAACAATTTTAAATTAAATTAAAGT 4 80 1 AAAATTAATT 0.714175 -25 ATCAACTATAAAAAACTCTTAGTTTCAGAAAATT 5 60 0 AAAACTAGTT 0.430147 -78 TATTCAATATAAAAATAATAAAATTTAATACTAT 5 111 0 AAAATAAAAT 0.812646 -27 ACTATTTTTAAAAAATTAAAAATTCGTTTTATCT 6 35 0 AAAATTAATT 0.714177 -124 TTAATTTTTTAAAAATAGTATGTTTATATTTGCG 6 50 1 AAAATATGTT 0.596204 -109 TTCATTTCAGAACAATCGCAAATATAAACATACT 6 66 0 AAAATCAATA 0.70704 -93 TTAATGGTATTACAACTTAAAATATGTTTAGAGA 6 129 1 TAAACTAATA 0.683011 -30 TGGAATATTGAAAAACAATTAATAGCATTATTGT 7 33 1 AAAACAAATA 0.938789 -101 ATATAAATAAAATAATACTATATAATTAA 8 6 0 AAAATATATA 0.886919 -114 TATGAGAAGAAAAAATATATAATAATTT 8 102 1 AAAATAAATA 0.961623 -18 AAGAAAATTGTATAACATTTAGTATATTTTCTGC 9 39 1 TAAACAAGTA 0.803355 -126 ATTTGGAATCAAGAATAGAAAAAAGCTTTCCAAG 10 67 1 AAAATAAAAA 0.919729 -101 AAAACCTATAAAAAATACTCAATTAGAAATTACT 10 139 0 AAAATAAATT 0.905277 -29 ACTAAAATAGGTAAAAAAATCTTAAG 11 3 1 TAAATAAAAA 0.860383 -298 TTTAATTAAAAATAATATCTTGTAGTTTATATTC 11 98 0 AAAATATGTA 0.776641 -203 TATTTTTAATTAAAACATAAAAAAGAAATTTAAC 11 118 1 TAAACAAAAA 0.789198 -183 ATAGTTTTAGAAAAATAACTAATTAGCTTTTATG 11 171 1 AAAATAAATT 0.905275 -130 AAATAGGATATAGAATATAGTATAACAACTGTAT 11 218 1 TAAATATATA 0.807763 -83 AACACTAAAATTATCAGTATTCTTATTAT 12 6 1 TAAATTAGTA 0.638375 -295 GTTTGTGACATAAAATAATAAGAATACTGATAAT 12 20 0 TAAATAAGAA 0.753961 -281 TCATTATATTTATAACACTATAAACTGCAAATCA 12 93 1 TAAACATAAA 0.537708 -208 ATAGATTTATAAAAACAACTAATAAATTTATATA 12 147 1 AAAACAAATA 0.938789 -154 AATTTACCTTAAAAATATTAAAAACCTAAATGTA 12 274 0 AAAATAAAAA 0.919729 -27 ** **** **** Masking position 5 Map Score: 26.472 Number of sites scoring better than the average of aligned sites = 1782 Number in coding regions = 1099 Number in noncoding regions = 683 Number of orfs with sites within 600 bp upstream = 277 Fraction of orfs with sites within 600 bp upstream = 0.0444908 Motif number 3 AATTAAATTTCCTTTTTAAAGCTCT 1 3 1 TTAATTTTTT 0.946709 -96 TTGCTTTTTTATATTATTTTAAGATTAAGT 1 79 0 TTATATTTTT 0.788425 -20 AACTTTAATTTAATTTAAAATTGTTA 4 89 0 TTAATTTTTT 0.946709 -16 TAGTATTAAATTTTATTATTTTTATATTGAATA 5 112 1 TTTATTATTT 0.704468 -26 TTTAAAAAATTAAAAATTCGTTTTATCTCACTT 6 30 0 TAAAATTTTT 0.924053 -129 ATTAAATGATTTTTATTTCATTTCAGAACAATC 6 83 0 TTTATTTTTT 0.879833 -76 GTATTACAACTTAAAATATGTTTAGAGAAAATT 6 135 1 TTAAATATTT 0.863846 -24 ACAATAATGCTATTAATTGTTTTTCAATATTCC 7 34 0 TATAATTTTT 0.83374 -100 AATTATATAGTATTATTTTATTTATATCACTGA 8 13 1 TATATTTTTT 0.820508 -107 AAATTATTATATATTTTTTCTTCTCATAATCT 8 98 0 TAATTTTCTT 0.455814 -22 CTAAATGTTATACAATTTTCTTTGTATTTATTT 9 28 0 TAAATTTTTT 0.917296 -137 CTTAAAAAGCTTTATATTCGCTTTTTGTTAGGA 9 72 1 TTATATTCTT 0.595422 -93 ATTTTTCAATTAGAAATTACCTTAGTAATTTCT 10 116 1 TAAAATTCTT 0.827741 -52 TATAATGATCTTAAGATTTTTTTACCTATTTTA 11 13 0 TTAGATTTTT 0.686112 -288 TGCAGATTGATTCAAATACTTTTAAATGTCTAC 11 57 0 TTAAATATTT 0.863846 -244 AAAACAGTCGTTAAATTTCTTTTTTATGTTTTA 11 128 0 TTAATTTTTT 0.946709 -173 TATTTTTACGTAAAAATTTGCTTGTGTAATTCT 11 270 0 TAAAATTCTT 0.827739 -31 AGTTTTATTATTTTTACGTAAAAAT 11 286 0 TTTATTATTT 0.704468 -15 ATTTTAATTTTTAAATTTGATTTGCAGTTTATA 12 111 0 TTAATTTTTT 0.946709 -190 AGAAGTCTTATATAAATTTATTAGTTGTTTTTA 12 156 0 TAAAATTTTA 0.439671 -145 ACATTTAGGTTTTTAATATTTTTAAGGTAAATT 12 275 1 TTTAATATTT 0.72337 -26 ** ***** *** Masking position 7 Map Score: 20.4009 Number of sites scoring better than the average of aligned sites = 945 Number in coding regions = 610 Number in noncoding regions = 335 Number of orfs with sites within 600 bp upstream = 167 Fraction of orfs with sites within 600 bp upstream = 0.026823 Motif number 4 TAAATTTCCTTTTTAAAGCTCTTTAAGCTGGTAA 1 14 1 TTAAACTTTT 0.965515 -85 GTTGATCTTCTTACAAGGCTTTTTTAGTATGATA 2 96 1 TTAAGCTTTT 0.840575 -48 AGTATCAACTATAAAAAACTCTTAGTTTCAGAAA 5 63 0 ATAAACTTTA 0.720019 -75 TTCTGGAATATTGAAAAACAATTAATAGCATTAT 7 30 1 TTAAACATTA 0.720039 -104 TATTTTCTGCTTAAAAAGCTTTATATTCGCTTTT 9 63 1 TTAAACTTAT 0.965359 -102 TTAATTAAACTTTTAAAACTCAATTGTTATCTTT 10 13 0 TTAAACTAAT 0.851139 -155 GAAATCAAGCTTGGAAAGCTTTTTTCTATTCTTG 10 76 0 TTAAACTTTT 0.965515 -92 AATTTAAAACCTATAAAAAATACTCA 10 152 0 TTAAACTTAA 0.959968 -16 TGCAGATTGATTCAAATACTTTTAAATGTCTACA 11 56 0 TTAATCTTTA 0.754351 -245 TTAGTTATTTTTCTAAAACTATCTTAATTATCAA 11 159 0 TTAAACTTCT 0.895997 -142 TTCATTATATTTATAACACTATAAACTGCAAATC 12 92 1 TTAACCTTAA 0.819022 -209 TTAGTTGTTTTTATAAATCTATAAGATTTTAATT 12 135 0 TTAAACTTAA 0.952608 -166 CTTAAAAATATTAAAAACCTAAATGTATAGGTTA 12 267 0 TTAAACTAAT 0.851019 -34 ** *** ** *** Masking position 6 Map Score: 9.71557 Number of sites scoring better than the average of aligned sites = 239 Number in coding regions = 159 Number in noncoding regions = 80 Number of orfs with sites within 600 bp upstream = 47 Fraction of orfs with sites within 600 bp upstream = 0.00754899 Motif number 5 CTATTATATATATAATCACTTAATCTTAAAAT 1 62 1 TATAATATTA 0.777523 -37 TATATTTACTGTCGTCTTTATT 3 1 1 TATATTATGT 0.930104 -30 GAAATACAAATATAATAATTTTCTGAAACTAA 5 44 1 TATAATATTT 0.850975 -94 AGTACGTATATTCAGTGTAAAGTGAGAT 6 7 1 TATATTATGT 0.930104 -152 CATTATTGACTTTATTAAATGATTTTTATTTC 6 97 0 TTTATTATGA 0.723351 -62 AGAACTGCTGGATAACAATTGTG 7 2 0 GATAACATGT 0.785891 -132 AGCATTATTGTGTATTGAATTACTTAATAATG 7 56 1 TGTATTATTA 0.544579 -78 CAATTTTCTTTGTATTTATTTTTTGTACTGGA 9 17 0 TGTATTATTT 0.661452 -148 AAGCAGAAAATATACTAAATGTTATACAATTT 9 43 0 TATACTATGT 0.803712 -122 TAAAAGATAACAATTGAGTTTTAAAAG 10 6 1 GATAACATGA 0.691971 -162 GTTTTAAAAGTTTAATTAATGTCTTTTGCTAT 10 28 1 TTTAATATGT 0.863076 -140 TCTTGTAGTTTATATTCATTGATACTGCAGAT 11 83 0 TATATTATGA 0.890641 -218 AAAAAAGAAATTTAACGACTGTTTTGATAATT 11 136 1 TTTAACATGT 0.825155 -165 TAGAATATAGTATAACAACTGTATCCAAGTTC 11 228 1 TATAACATGT 0.936305 -73 GTAGTCATTGTGTAACTAGTGTGTTTGTGACA 12 44 0 TGTAACATGT 0.881247 -257 GTGTTATAAATATAATGAATTATGTGGATACT 12 79 0 TATAATATTA 0.777523 -222 ****** * *** Masking position 8 Map Score: 10.4699 Number of sites scoring better than the average of aligned sites = 439 Number in coding regions = 273 Number in noncoding regions = 166 Number of orfs with sites within 600 bp upstream = 91 Fraction of orfs with sites within 600 bp upstream = 0.0146161 Motif number 6 CTTGACGTTATATACTATTATATATATAAT 1 48 1 TATACTATTA 0.669162 -51 TACTATTATATATATAATCACTTAATCTTA 1 60 1 TATATAATCA 0.69559 -39 AGTATGATATTATAAAATAATAAGGAATAT 2 121 1 TATAAAATAA 0.555833 -23 AGTAATTCAATACACAATAATGCTATTAAT 7 50 0 TACACAATAA 0.91948 -84 TGTATTGAATTACTTAATAATGTGCTTAAG 7 66 1 TACTTAATAA 0.513533 -68 AAAATAATACTATATAATTAA 8 2 0 TATATAATTA 0.895723 -118 GAAGAAAAAATATATAATAATTT 8 107 1 TATATAATAA 0.83532 -13 TACTAAATGTTATACAATTTTCTTTGTATT 9 33 0 TATACAATTT 0.669163 -132 ACATAAGTACTATACAATTAAACGTTACAT 9 108 1 TATACAATTA 0.950013 -57 CTATAAAAAATACTCAATTAGAAATTACTA 10 138 0 TACTCAATTA 0.798183 -30 ACACACTAGTTACACAATGACTACTACAGT 12 52 1 TACACAATGA 0.837245 -249 CTTCTCACTCTACATAATTATGGACAAAAA 12 184 1 TACATAATTA 0.897466 -117 AGCATTAACCTATACATTTAGGTTTTTAAT 12 262 1 TATACATTTA 0.66915 -39 ********** Masking position 2 Map Score: 7.21512 Number of sites scoring better than the average of aligned sites = 171 Number in coding regions = 85 Number in noncoding regions = 86 Number of orfs with sites within 600 bp upstream = 51 Fraction of orfs with sites within 600 bp upstream = 0.00819146 Motif number 7 CTTGACGTTATATACTATTATATATATAATCA 1 48 1 TATACTATAA 0.685022 -51 ATCGTAGTACTTTAGCATGATATATCTAATT 2 10 0 TTTAGCATAA 0.891117 -134 GTTCACATCATTTAGGATAAGATTTTATCTCA 2 42 1 TTTAGGATAA 0.753338 -102 ACAAGGCTTTTTTAGTATGATATTATAAAATA 2 108 1 TTTAGTATAA 0.935885 -36 ACAAGTAAGTCATAGTATGAAATTTAA 4 6 0 CATAGTATAA 0.958935 -99 ATTGTTACTGCTTAGCTTAAGCACGTAGTCTA 4 64 0 CTTAGCTTAC 0.393137 -41 ATAAAAAACTCTTAGTTTCAGAAAATTATTAT 5 55 0 CTTAGTTTAA 0.769775 -83 GTGTCTTGACCATAGTATCAACTATAAAAAAC 5 78 0 CATAGTATAC 0.890036 -60 GTCAAGACACTATAGTATTAAATTTTATTATT 5 100 1 TATAGTATAA 0.952748 -38 TTAATTATATAGTATTATTTTATTTATAT 8 8 1 TATAGTATAT 0.744131 -112 AAATTAATATCATAGCAAAAGACATTAATTAA 10 39 0 CATAGCAAAA 0.581484 -129 GGATATAGAATATAGTATAACAACTGTATCCA 11 223 1 TATAGTATAA 0.958184 -78 ATTTGCAGTTTATAGTGTTATAAATATAATGA 12 93 0 TATAGTGTAA 0.807852 -208 ******** * * Masking position 4 Map Score: 5.27103 Number of sites scoring better than the average of aligned sites = 268 Number in coding regions = 155 Number in noncoding regions = 113 Number of orfs with sites within 600 bp upstream = 75 Fraction of orfs with sites within 600 bp upstream = 0.0120463 Motif number 8 ATTTAAAATTGTTACTGCTTAGCTTAAGCA 4 73 0 GTTACTGCTT 0.823698 -32 AGCTGCTGCAGTTAATCCAGATTATGAGAA 8 80 1 GTTAATCCAG 0.944185 -40 TGTTAATCCAGTACAAAAAAT 9 2 1 GTTAATCCAG 0.944185 -163 CTAATTGAAAAATACTGCAGAAATCAAGCT 10 99 0 AATACTGCAG 0.891868 -69 TATATTCATTGATACTGCAGATTGATTCAA 11 75 0 GATACTGCAG 0.984517 -226 GAATTATGTGGATACTGTAGTAGTCATTGT 12 65 0 GATACTGTAG 0.891868 -236 AAATGTATAGGTTAATGCTGAATGTAAAAG 12 251 0 GTTAATGCTG 0.94577 -50 ********** Masking position 4 Map Score: 2.73823 Number of sites scoring better than the average of aligned sites = 109 Number in coding regions = 90 Number in noncoding regions = 19 Number of orfs with sites within 600 bp upstream = 13 Fraction of orfs with sites within 600 bp upstream = 0.00208802 Motif number 9 TAATATCATCATGTAACTTATC 5 1 1 TAAACATCAT 0.843176 -137 TTTTAAGTTGTAATACCATTAACATTATTGAC 6 119 0 TAAACATTAA 0.938271 -40 GAAAAACAATTAATAGCATTATTGTGTATTGA 7 42 1 TAAACATTAT 0.962655 -92 ACACTTAACTTAAGCACATTATTAAGTAATTC 7 72 0 TAACCATTAT 0.843174 -62 ATACACAAACTTAAAACATTATTTTT 9 149 1 TTAACATTAT 0.955836 -16 AAAAAAATCTTAAGATCATTATATGACAGAAG 11 23 1 TAAACATTAT 0.96266 -278 TTATTTTTAATTAAAACATAAAAAAGAAATTT 11 117 1 TTAACATAAA 0.642776 -184 ATATCCTATTTTATTTCATTAAGTCATAAAAG 11 197 0 TTATCATTAA 0.642197 -104 TTCATTATATTTATAACACTATAAACTGCAAA 12 92 1 TTAACACTAT 0.803366 -209 CAACATTTTTTTATAACATTTTTGTCACAATA 12 215 0 TTAACATTTT 0.733802 -86 CAATTTACCTTAAAAATATTAAAAACCTAAAT 12 277 0 TAAATATTAA 0.544711 -24 *** * ****** Masking position 8 Map Score: 4.33264 Number of sites scoring better than the average of aligned sites = 203 Number in coding regions = 147 Number in noncoding regions = 56 Number of orfs with sites within 600 bp upstream = 29 Fraction of orfs with sites within 600 bp upstream = 0.00465789 Motif number 10 TTGCTTTTTTATATTATTTTAAG 1 86 0 GCTTTTTTTA 0.97954 -13 TTGGATCTTTGCTCTTTTTGAAGTTGATCTT 2 74 1 GCTCTTTTGA 0.935538 -70 TTCTTACAAGGCTTTTTTAGTATGATATTAT 2 103 1 GCTTTTTTGT 0.907339 -41 CTTTATATTCGCTTTTTGTTAGGAATCACAT 9 81 1 GCTTTTTGTA 0.945963 -84 AGCTTGGAAAGCTTTTTTCTATTCTTGATTC 10 72 0 GCTTTTTTTA 0.97954 -96 AAAAAATGTTGCTTTCTTTTACATTCAGCAT 12 236 1 GCTTTCTTTA 0.945963 -65 ******** ** Masking position 5 Map Score: 2.45631 Number of sites scoring better than the average of aligned sites = 28 Number in coding regions = 15 Number in noncoding regions = 13 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 11 TGTAAGAAGATCAACTTCAAAAAGAGCAAAG 2 80 0 TCAATTCAAA 0.895703 -64 CTAAGCAGTAACAATTTTAAATTAAATTAAA 4 81 1 ACAATTTAAA 0.725996 -24 GACCATAGTATCAACTATAAAAAACTCTTAG 5 72 0 TCAATATAAA 0.960521 -66 CAGAACAATCGCAAATATAAACATACTATTT 6 62 0 GCAATATAAA 0.932328 -97 TGTTAATCCAGTACAAAAAATAAATAC 9 7 1 TCCATACAAA 0.813029 -158 CTAACAAAAAGCGAATATAAAGCTTTTTAAG 9 72 0 GCGATATAAA 0.785375 -93 GCAGTATTTTTCAATTAGAAATTACCTTAGT 10 111 1 TCAATAGAAA 0.942435 -57 TAAAAAATACTCAATTAGAAATTACTAAGGT 10 134 0 TCAATAGAAA 0.942435 -34 AAACTGCAAATCAAATTTAAAAATTAAAATC 12 114 1 TCAATTTAAA 0.927338 -187 **** ****** Masking position 6 Map Score: 4.70598 Number of sites scoring better than the average of aligned sites = 87 Number in coding regions = 47 Number in noncoding regions = 40 Number of orfs with sites within 600 bp upstream = 32 Fraction of orfs with sites within 600 bp upstream = 0.00513974 Motif number 12 ********** No masking Map Score: 1.35957e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 ********** No masking Map Score: 1.35957e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: 1.35957e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0