AlignACE version 2.2 July 7, 1998 alignACE -a/home/amcguire/genomes/ORF_rpxx.txt -z/home/amcguire/genomes/rpxx.fna -irpoN_rpxx_opreg_300.orf -g0.290 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.29 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 RP122 98 HFLK PROTEIN (hflK) #2 RP123 143 HFLC PROTEIN (hflC) #3 RP124 30 PROBABLE PERIPLASMIC SERINE PROTEASE DO-LIKE PRECURSOR (htrA) #4 RP125 104 unknown #5 RP126 137 SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT (sdhC) #6 RP127 158 SUCCINATE DEHYDROGENASE HYDROPHOBIC MEMBRANE ANCHOR PROTEIN (sdhD) #7 RP128 133 SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT (sdhA) #8 RP129 119 PUTATIVE GLUTAMINE TRANSPORT SYSTEM PERMEASE PROTEIN GLNP (glnP) #9 RP150 164 AMINO-ACID ABC TRANSPORTER BINDING PROTEIN (yqiX) #10 RP151 167 GLUTAMYL-tRNA AMIDOTRANSFERASE SUBUNIT B (gatB) #11 RP153 300 GLUTAMYL-tRNA AMIDOTRANSFERASE SUBUNIT C (gatC) #12 RP562 300 NITROGEN ASSIMILATION REGULATORY PROTEIN NTRX (ntrX) Motif number 1 TGCTTTTTTATATTATTTTAAGATTAAGTG 1 78 0 TATTATTTTA 0.970968 -21 TCATTTAGGATAAGATTTTATCTCATTGGA 2 49 1 TAAGATTTTA 0.903526 -95 GCTTTTTTAGTATGATATTATAAAATAATA 2 113 1 TATGATATTA 0.837127 -31 TAATATTCCTTATTATTTTATAATATCATA 2 123 0 TATTATTTTA 0.970968 -21 TTCAGAAAATTATTATATTTGTATTTCTTG 5 41 0 TATTATATTT 0.899476 -97 TATTAAATTTTATTATTTTTATATTGAATA 5 115 1 TATTATTTTT 0.967299 -23 AACGAATTTTTAATTTTTTAAAAATAGTAT 6 41 1 TAATTTTTTA 0.861603 -118 TCAATTAATTTTTTACTTTTGATAC 7 119 0 TAATTTTTTA 0.861603 -15 AATTATATAGTATTATTTTATTTATATCAC 8 13 1 TATTATTTTA 0.970968 -107 ACAGGAAGTATAATTTTTTAGCTGCTGCAG 8 61 1 TAATTTTTTA 0.861603 -59 AAACTTAAAACATTATTTTT 9 155 1 CATTATTTTT 0.917033 -10 TGTCTTTTGCTATGATATTAATTTGGAATC 10 47 1 TATGATATTA 0.837127 -121 ATAATGATCTTAAGATTTTTTTACCTATTT 11 15 0 TAAGATTTTT 0.893629 -286 AACTACAAGATATTATTTTTAATTAAAACA 11 105 1 TATTATTTTT 0.967299 -196 TTCTATATCCTATTTTATTTCATTAAGTCA 11 203 0 TATTTTATTT 0.735838 -98 AGTTTTATTATTTTTACGTAAAAAT 11 286 0 TATTATTTTT 0.967299 -15 TCAGTATTCTTATTATTTTATGTCACAAAC 12 24 1 TATTATTTTA 0.970968 -277 CCACATAATTCATTATATTTATAACACTAT 12 84 1 CATTATATTT 0.772214 -217 TATAAATCTATAAGATTTTAATTTTTAAAT 12 128 0 TAAGATTTTA 0.903526 -173 ATTTTTGTCACAATATTTTTTGTCCATAAT 12 200 0 CAATATTTTT 0.865164 -101 AAGAAAGCAACATTTTTTTATAACATTTTT 12 224 0 CATTTTTTTA 0.801916 -77 TTTAGGTTTTTAATATTTTTAAGGTAAATT 12 278 1 TAATATTTTT 0.943232 -23 ********** Masking position 6 Map Score: 37.4116 Number of sites scoring better than the average of aligned sites = 857 Number in coding regions = 571 Number in noncoding regions = 286 Number of orfs with sites within 600 bp upstream = 164 Fraction of orfs with sites within 600 bp upstream = 0.0263412 Motif number 2 AATTAAATTTCCTTTTTAAAGCTCT 1 3 1 TTAAATTTTT 0.92102 -96 TAACTTGACGTTATATACTATTATATATATAAT 1 45 1 TTATATATTA 0.910083 -54 TTGCTTTTTTATATTATTTTAAGATTAAGTG 1 78 0 TTATATTTTA 0.940497 -21 AGTAACAATTTTAAATTAAATTAAAGTT 4 87 1 TTAAATTTTA 0.895868 -18 CAGAAAATTATTATATTTGTATTTCTTGGTTAT 5 36 0 TTATATTATT 0.528795 -102 CACTATAGTATTAAATTTTATTATTTTTATATT 5 107 1 TTAAATTTTA 0.895806 -31 TAAAACGAATTTTTAATTTTTTAAAAATAGTAT 6 38 1 TTTTAATTTA 0.536782 -121 ATTAAATGATTTTTATTTCATTTCAGAACAATC 6 83 0 TTTTATTTTT 0.916992 -76 GTATTACAACTTAAAATATGTTTAGAGAAAATT 6 135 1 TTAAAATTTT 0.623481 -24 TTAATTATATAGTATTATTTTATTTAT 8 5 1 TTATATATTA 0.910083 -115 AAATTATTATATATTTTTTCTTCTCATAA 8 101 0 TTATATATTT 0.931997 -19 ACAATTTTCTTTGTATTTATTTTTTGTACTGGA 9 17 0 TTGTATTTTT 0.826088 -148 ACAAAGAAAATTGTATAACATTTAGTATATTTT 9 36 1 TTGTATATTT 0.750164 -129 TTAAAAAGCTTTATATTCGCTTTTTGTTAGGAA 9 73 1 TTATATTTTT 0.955912 -92 GCAAAAGACATTAATTAAACTTTTAAAACTCAA 10 24 0 TTAATTATTT 0.411923 -144 ATTGAGTATTTTTTATAGGTTTTAAATT 10 150 1 TTTTATATTT 0.874736 -18 GTTGTAGACATTTAAAAGTATTTGAATCAATCT 11 54 1 TTTAAAATTT 0.34782 -247 ATCTTGTAGTTTATATTCATTGATACTGCAGAT 11 83 0 TTATATTTGA 0.551309 -218 CTACAAGATATTATTTTTAATTAAAACATAAAA 11 107 1 TTATTTTTTA 0.603476 -194 AAAACAGTCGTTAAATTTCTTTTTTATGTTTTA 11 128 0 TTAAATTTTT 0.92102 -173 CTATATCCTATTTTATTTCATTAAGTCATAAAA 11 198 0 TTTTATTTTA 0.890839 -103 AGTTTTATTATTTTTACGTAAAAAT 11 286 0 TTTTATTTTT 0.916991 -15 ATTTTAATTTTTAAATTTGATTTGCAGTTTATA 12 111 0 TTAAATTTTT 0.92102 -190 GTGAGAAGTCTTATATAAATTTATTAGTTGTTT 12 159 0 TTATATATTA 0.910004 -142 AGCAACATTTTTTTATAACATTTTTGTCACAAT 12 216 0 TTTTATATTT 0.874736 -85 CATTTAGGTTTTTAATATTTTTAAGGTAAATTG 12 276 1 TTTAATATTA 0.73506 -25 ******* *** Masking position 2 Map Score: 32.0498 Number of sites scoring better than the average of aligned sites = 1135 Number in coding regions = 678 Number in noncoding regions = 457 Number of orfs with sites within 600 bp upstream = 226 Fraction of orfs with sites within 600 bp upstream = 0.0362994 Motif number 3 AATTAAATTTCCTTTTTAAAGCTCTTTAAGCTGGTAACTT 1 8 1 TTTTTACTAG 0.642759 -91 TTGCTTTTTTATATTATTTTAAGATTAAGTGAT 1 76 0 TTGTTATTAG 0.776496 -23 TTAAATTTCATACTATGACTTACTTGTGGTCTCTTGTT 4 6 1 TTTTTATTTG 0.702589 -99 CTAAGAGTTTTTTATAGTTGATACTATGGTCAAGACACTATAG 5 72 1 TTTATATTAA 0.928625 -66 AAATAGTATGTTTATATTTGCGATTGTTCTGAAATGAAATAAA 6 62 1 TTTATATTAA 0.928457 -97 ATAAAAATCATTTAATAAAGTCAATAATGTTAATGGTATTACA 6 100 1 TTTTAATTAA 0.768335 -59 TGTTAATGGTATTACAACTTAAAATATGTTTAGAGAAAATTA 6 127 1 ATTATATTAG 0.591298 -32 TCAATTAATTTTTTACTTTTGATACGGTATATCTCTGTTAA 7 103 0 TTTTTGTTTA 0.500184 -31 ATAGTATTATTTTATTTATATCACTGAGCTTAACAACAATACA 8 19 1 TTTTTATTAA 0.957257 -101 TTTCTTTGTATTTATTTTTTGTACTGGATTAACA 9 2 0 TTTTTATTAC 0.857433 -163 ATATAAAGCTTTTTAAGCAGAAAATATACTAAATGTTATACAA 9 46 0 TTTAAATTAA 0.689809 -119 TTTATATTCGCTTTTTGTTAGGAATCACATAAGTACTATACAA 9 82 1 CTTTTATTAG 0.793972 -83 AAGATAACAATTGAGTTTTAAAAGTTTAATTAATGTCTTTTGC 10 14 1 TTGTTATTAA 0.797635 -154 TCTGCAGTATTTTTCAATTAGAAATTACCTTAGTAATTTCTAA 10 108 1 TTTATATTAG 0.919793 -60 GTTTATATTCATTGATACTGCAGATTGATTCAAATACTTTTAA 11 65 0 ATTTTGTTAA 0.513474 -236 AGTCGTTAAATTTCTTTTTTATGTTTTAATTAAAAATAATATC 11 113 0 TTTTTGTTAA 0.893225 -188 TAACGACTGTTTTGATAATTAAGATAGTTTTAGAAAAATAACT 11 148 1 TTTTTGTTAG 0.88057 -153 AACTAATTAGCTTTTATGACTTAATGAAATAAAATAGGATATA 11 187 1 CTTAAATTAA 0.291387 -114 TACGTAAAAATTTGCTTGTGTAATTCTGATAAAATTAGAACTT 11 254 0 TTTTTATTAA 0.957259 -47 TTAAATTTGATTTGCAGTTTATAGTGTTATAAATATAATGAAT 12 91 0 TTTATATTAA 0.928621 -210 GCAAATCAAATTTAAAAATTAAAATCTTATAGATTTATAAAAA 12 119 1 TTTATATTGA 0.566767 -182 GAAAGCAACATTTTTTTATAACATTTTTGTCACAATATTTTTT 12 209 0 TTTTTATTAC 0.857447 -92 *** * * * * * ** Masking position 20 Map Score: 16.0967 Number of sites scoring better than the average of aligned sites = 526 Number in coding regions = 331 Number in noncoding regions = 195 Number of orfs with sites within 600 bp upstream = 122 Fraction of orfs with sites within 600 bp upstream = 0.0195952 Motif number 4 TTAAAGAGCTTTAAAAAGGAAATTTAATT 1 7 0 TAAAAGGAAT 0.402867 -92 GATCAACTTCAAAAAGAGCAAAGATCCAATGAG 2 70 0 AAAAAGCAAG 0.781197 -74 GATATTATAAAATAATAAGGAATATTAA 2 126 1 ATAAAAGAAT 0.571751 -18 ACTTATCTTCATAACCAAGAAATACAAATATAA 5 26 1 AAACAAGAAT 0.664236 -112 TATTCAATATAAAAATAATAAAATTTAATACTA 5 112 0 AAAAAATAAA 0.773884 -26 GTGTAAAGTGAGATAAAACGAATTTTTAATTTT 6 25 1 AATAAACAAT 0.810366 -134 TGGAATATTGAAAAACAATTAATAGCATTATTG 7 33 1 AAAAAATAAT 0.957663 -101 CGTATCAAAAGTAAAAAATTAATTGA 7 118 1 GAAAAATAAT 0.717853 -16 GATTATGAGAAGAAAAAATATATAATAATTT 8 99 1 AAAAAATTAT 0.618739 -21 TTAATCCAGTACAAAAAATAAATACAAAGAAAA 9 13 1 AAAAAATAAT 0.957776 -152 GTGATTCCTAACAAAAAGCGAATATAAAGCTTT 9 77 0 AAAAAGCAAT 0.938642 -88 ATACTCAATTAGAAATTACTAAGGTAATTTCTA 10 126 0 AAAATACAAG 0.499332 -42 AAAACCTATAAAAAATACTCAATTAGAAATTAC 10 140 0 AAAAACTAAT 0.754761 -28 TAATTAAAACATAAAAAAGAAATTTAACGACTG 11 124 1 AAAAAAGAAT 0.949133 -177 ATAGTTTTAGAAAAATAACTAATTAGCTTTTAT 11 171 1 AAAAAACAAT 0.969713 -130 ATTTTTACGTAAAAATAATAAAACT 11 286 1 AAAAAATAAA 0.773884 -15 ATAGTGTTATAAATATAATGAATTATGTGGATA 12 81 0 AATAAATAAT 0.751679 -220 TTATAACACTATAAACTGCAAATCAAATTTAAA 12 102 1 AAAATGCAAT 0.671129 -199 ATAGATTTATAAAAACAACTAATAAATTTATAT 12 147 1 AAAAAACAAT 0.969715 -154 * *** *** *** Masking position 12 Map Score: 12.3741 Number of sites scoring better than the average of aligned sites = 461 Number in coding regions = 314 Number in noncoding regions = 147 Number of orfs with sites within 600 bp upstream = 95 Fraction of orfs with sites within 600 bp upstream = 0.0152586 Motif number 5 CAATGAGATAAAATCTTATCCTAAATGATG 2 47 0 AAATCTTATC 0.664541 -97 TTTAATTTAAAATTGTTACTGCTTAGCTTA 4 77 0 AATTGTTACT 0.642972 -28 AGTTTCAGAAAATTATTATATTTGTATTTC 5 44 0 AATTATTATA 0.795227 -94 ACATATTTTAAGTTGTAATACCATTAACAT 6 126 0 AGTTGTAATA 0.575339 -33 CACAATTGTTATCCAGCAGTTCT 7 4 1 AATTGTTATC 0.947246 -130 TAATGCTATTAATTGTTTTTCAATATTCCA 7 33 0 AATTGTTTTT 0.699884 -101 AAATTATTATATATTTTTTCT 8 109 0 AATTATTATA 0.795227 -11 AAAATATACTAAATGTTATACAATTTTCTT 9 39 0 AAATGTTATA 0.921107 -126 TTTAAAACTCAATTGTTATCTTTTA 10 6 0 AATTGTTATC 0.947246 -162 ACTTGGATACAGTTGTTATACTATATTCTA 11 228 0 AGTTGTTATA 0.927175 -73 TTAAAAATTAAAATCTTATAGATTTATAAA 12 130 1 AAATCTTATA 0.735609 -171 TAAATTTATTAGTTGTTTTTATAAATCTAT 12 147 0 AGTTGTTTTT 0.540744 -154 ATTGTGACAAAAATGTTATAAAAAAATGTT 12 216 1 AAATGTTATA 0.921107 -85 ********** Masking position 1 Map Score: 7.44044 Number of sites scoring better than the average of aligned sites = 287 Number in coding regions = 184 Number in noncoding regions = 103 Number of orfs with sites within 600 bp upstream = 66 Fraction of orfs with sites within 600 bp upstream = 0.0106007 Motif number 6 TTATATACTATTATATATATAATCACTTAATC 1 55 1 TTATTATTAA 0.448765 -44 TACTTTAGCATGATATATCTAATT 2 3 0 TGATTATTAA 0.823216 -141 CTAGACTACGTGCTTAAGCTAAGCAGTAACAA 4 63 1 TGCTAAGTAA 0.961441 -42 TATTTCTTGGTTATGAAGATAAGTTACATGAT 5 18 0 TTATAAGTAA 0.872856 -120 TATAATAATTTTCTGAAACTAAGAGTTTTTTA 5 54 1 TTCTAAATAA 0.815215 -84 CTTAATAATGTGCTTAAGTTAAGTGTTAACAG 7 78 1 TGCTAAGTAA 0.961441 -56 TTAAGCTCAGTGATATAAATAAAATAATACTA 8 20 0 TGATTAATAA 0.745456 -100 ATTTTTTAGCTGCTGCAGTTAATCCAGATTAT 8 73 1 TGCTCAGTAA 0.868814 -47 TTCTTTTTTATGTTTTAATTAAAAATAATATC 11 113 0 TGTTTAATAA 0.610524 -188 GTTTATAGTGTTATAAATATAATGAATTATGT 12 86 0 TTATAATTAA 0.745399 -215 TATAGGTTAATGCTGAATGTAAAAGAAAGCAA 12 244 0 TGCTAATTAA 0.92696 -57 GTTTTTAATATTTTTAAGGTAAATTGTC 12 283 1 TTTTAAGTAA 0.754816 -18 **** *** *** Masking position 7 Map Score: 6.08363 Number of sites scoring better than the average of aligned sites = 344 Number in coding regions = 285 Number in noncoding regions = 59 Number of orfs with sites within 600 bp upstream = 37 Fraction of orfs with sites within 600 bp upstream = 0.00594282 Motif number 7 TGTGGTCTCTTGTTTTGCATATTGTGTTCT 4 35 1 TGTTTTGCAT 0.659115 -70 TAAATTTTATTATTTTTATATTGAATAGTT 5 118 1 TATTTTTATA 0.895366 -20 ATAAACATACTATTTTTAAAAAATTAAAAA 6 47 0 TATTTTTAAA 0.878069 -112 TGCTATTAATTGTTTTTCAATATTCCAGAA 7 30 0 TGTTTTTCAA 0.925607 -104 TTAATTAATGTCTTTTGCTATGATATTAAT 10 39 1 TCTTTTGCTA 0.724519 -129 ATTTCTGCAGTATTTTTCAATTAGAAATTA 10 105 1 TATTTTTCAA 0.906228 -63 TACAAGATATTATTTTTAATTAAAACATAA 11 108 1 TATTTTTAAT 0.641169 -193 ATTTAACGACTGTTTTGATAATTAAGATAG 11 145 1 TGTTTTGATA 0.873425 -156 GCTAATTAGTTATTTTTCTAAAACTATCTT 11 168 0 TATTTTTCTA 0.919899 -133 ATTTATTAGTTGTTTTTATAAATCTATAAG 12 144 0 TGTTTTTATA 0.916788 -157 GAAAGCAACATTTTTTTATAACATTTTTGT 12 222 0 TTTTTTTATA 0.678578 -79 ********** Masking position 5 Map Score: 6.07846 Number of sites scoring better than the average of aligned sites = 431 Number in coding regions = 281 Number in noncoding regions = 150 Number of orfs with sites within 600 bp upstream = 98 Fraction of orfs with sites within 600 bp upstream = 0.0157404 Motif number 8 ATACTCCAAATAAAGACGAC 3 21 0 ATACTCCAAA 0.958322 -10 TTGTTTTTCAATATTCCAGAACTGCTGGAT 7 21 0 ATATTCCAGA 0.928773 -113 GCTGCTGCAGTTAATCCAGATTATGAGAAG 8 81 1 TTAATCCAGA 0.762862 -39 TAATTGAAAAATACTGCAGAAATCAAGCTT 10 98 0 ATACTGCAGA 0.985517 -70 ATATTCATTGATACTGCAGATTGATTCAAA 11 74 0 ATACTGCAGA 0.985517 -227 ATAACACTATAAACTGCAAATCAAATTTAA 12 104 1 AAACTGCAAA 0.850134 -197 ********** Masking position 5 Map Score: 2.04937 Number of sites scoring better than the average of aligned sites = 48 Number in coding regions = 37 Number in noncoding regions = 11 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555 Motif number 9 TATATATATAATCACTTAATCTTAAAATAA 1 66 1 ATCACTTAAT 0.916426 -33 AATATTCCTTATTATTTTATAATATCATAC 2 122 0 ATTATTTTAT 0.843829 -22 ATTTCATACTATGACTTACTTGTGGTCTCT 4 15 1 ATGACTTACT 0.790622 -90 TGAAATAAAAATCATTTAATAAAGTCAATA 6 96 1 ATCATTTAAT 0.895156 -63 TGTGTATTGAATTACTTAATAATGTGCTTA 7 64 1 ATTACTTAAT 0.912436 -70 ATTATATAGTATTATTTTATTTATATCACT 8 14 1 ATTATTTTAT 0.843829 -106 TTTCTTTTTTATGTTTTAATTAAAAATAAT 11 116 0 ATGTTTTAAT 0.66432 -185 ATTAGCTTTTATGACTTAATGAAATAAAAT 11 192 1 ATGACTTAAT 0.940806 -109 CAGTATTCTTATTATTTTATGTCACAAACA 12 25 1 ATTATTTTAT 0.843829 -276 ********** Masking position 6 Map Score: 5.32104 Number of sites scoring better than the average of aligned sites = 247 Number in coding regions = 162 Number in noncoding regions = 85 Number of orfs with sites within 600 bp upstream = 51 Fraction of orfs with sites within 600 bp upstream = 0.00819146 Motif number 10 CAGCTTAAAGAGCTTTAAAAAGGAAATTTAA 1 13 0 AGCTTAAAAA 0.869271 -86 ATCTTAAAATAATATAAAAAAGCAA 1 84 1 AATATAAAAA 0.75995 -15 TAAGAAGATCAACTTCAAAAAGAGCAAAGAT 2 78 0 AACTTAAAAA 0.972458 -66 CCATAGTATCAACTATAAAAAACTCTTAGTT 5 70 0 AACTAAAAAA 0.887782 -68 CTATTTTTAAAAAATTAAAAATTCGTTTTAT 6 37 0 AAAATAAAAA 0.759951 -122 ATGGTATTACAACTTAAAATATGTTTAGAGA 6 132 1 AACTTAAATA 0.817722 -27 TTCATACACAAACTTAAAACATTATTTTT 9 146 1 AACTTAAACA 0.869269 -19 ACATTAATTAAACTTTTAAAACTCAATTGTT 10 19 0 AACTTTAAAA 0.803527 -149 AATTTAAAACCTATAAAAAATACTCAATT 10 149 0 ACCTAAAAAA 0.598367 -19 TTTTAATTAAAACATAAAAAAGAAATTTAAC 11 121 1 AACATAAAAA 0.948222 -180 ACTGCAAATCAAATTTAAAAATTAAAATCTT 12 116 1 AAATTAAAAA 0.859232 -185 TTACCTTAAAAATATTAAAAACCTAAATGTA 12 274 0 AATATAAAAA 0.75995 -27 ***** ***** Masking position 8 Map Score: 8.34392 Number of sites scoring better than the average of aligned sites = 326 Number in coding regions = 220 Number in noncoding regions = 106 Number of orfs with sites within 600 bp upstream = 76 Fraction of orfs with sites within 600 bp upstream = 0.0122069 Motif number 11 ATTATATATATAATAGTATATAACGTCAAG 1 48 0 TAATAGTATA 0.824033 -51 TTTTATAATATCATACTAAAAAAGCCTTGT 2 108 0 TCATACTAAA 0.807826 -36 TTAAATTTCATACTATGACTTACTTGT 4 8 1 TCATACTATG 0.929986 -97 TTTTTATAGTTGATACTATGGTCAAGACAC 5 80 1 TGATACTATG 0.878311 -58 TAATAAAATTTAATACTATAGTGTCTTGAC 5 100 0 TAATACTATA 0.965863 -38 ATAAATAAAATAATACTATATAATTAA 8 8 0 TAATACTATA 0.965863 -112 GATACAGTTGTTATACTATATTCTATATCC 11 223 0 TTATACTATA 0.895831 -78 ATTATATTTATAACACTATAAACTGCAAAT 12 95 1 TAACACTATA 0.882561 -206 ********** Masking position 5 Map Score: 5.26673 Number of sites scoring better than the average of aligned sites = 96 Number in coding regions = 58 Number in noncoding regions = 38 Number of orfs with sites within 600 bp upstream = 25 Fraction of orfs with sites within 600 bp upstream = 0.00401542 Motif number 12 ********** No masking Map Score: 1.35957e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 ********** No masking Map Score: 1.35957e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: 1.35957e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0