AlignACE version 2.2 July 7, 1998 alignACE -a/home/amcguire/genomes/ORF_tpal.txt -z/home/amcguire/genomes/tpal.fna -icpxR6_tpal_opreg_300.orf -g0.528 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.528 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 TP0773 300 periplasmic serine protease DO (htrA-1) #2 TP0841 300 periplasmic serine protease DO (htrA-2) #3 TP0949 275 membrane protein #4 TP0951 119 ribosomal protein L34 (rpmH) #5 TP0952 81 lipase, putative #6 TP0953 86 pheromone shutdown protein (traB) #7 TP0954 71 conserved hypothetical protein #8 TP0955 95 T. pallidum predicted coding region TP0955 #9 TP1016 72 basic membrane protein (tpn39b) #10 TP1017 171 alanyl-tRNA synthetase (alaS) Motif number 1 CAGACACGCTAGCTTCAGGTGCTAGTGCCTTC 1 32 0 AGCTCGGTGC 0.516846 -269 CGATGGTGGAATTGGCAGACACGCTAGCTTCA 1 47 0 ATTGCGACAC 0.760318 -254 CCACGCGCAGCGCCGCGGGCAGCGTGTATTGG 1 188 0 CGCGCGGCAG 0.985445 -113 TAGCCCACGGCGCCACGCGCAGCGCCGCGGGC 1 200 0 CGCACCGCAG 0.970804 -101 GGGCTATTAGCTCAGCTGGTAGAGCAACGCCC 1 226 1 CTCGCGGTAG 0.762348 -75 GATTCGAACCATCGACCCACGCCTTAAAAGGG 1 255 0 ATCACCACGC 0.743597 -46 ACTATCAGCACACCGCGCACACTT 2 3 0 CACGCCACAC 0.958895 -298 ACAAACTGCTCCCTGCATGTACTATCAGCACA 2 23 0 CCCGCTGTAC 0.681296 -278 TGTAAGTGTACGTGGCGGGCACAGGTGAAGAG 2 70 1 CGTGCGGCAC 0.970292 -231 CCGGGTTAAAAGCAGCACACAGCGATATGGTT 2 115 0 AGCGCCACAG 0.977591 -186 GTACCCAAACCCCTACCGACACAGCCCGGGTT 2 140 0 CCCACGACAC 0.940166 -161 CCCTCCACGTCCCTGCGCGTACCCAAACCCCT 2 158 0 CCCGCCGTAC 0.964866 -143 ACCGCATGTACCCCACACACAAACGAGGTAAA 2 206 0 CCCACCACAA 0.736234 -95 GGATGACCAGAGCAGCAGATAAAAACGAGCAA 2 266 0 AGCGCGATAA 0.724278 -35 CACGCACAGCAGCCGCTGATACGCCGCAAGCT 3 42 0 AGCGCGATAC 0.956646 -234 CGCGCGATCACACAACACGCACAGCAGCCGCT 3 57 0 CACACCGCAC 0.933676 -219 CATGCACACAAGCGACGCACACTCACGGCCTA 3 125 0 AGCACCACAC 0.980951 -151 ATCCGTTTTTACCAGCGCGCTCTTTCCCCTCA 3 185 1 ACCGCCGCTC 0.831888 -91 TTATTATCCGAGTTGCTCGCAGTATGCCTATG 3 235 1 AGTGCCGCAG 0.914908 -41 CCATGTACTCGCACGCTCTCATAG 3 262 0 ATGACCGCAC 0.736762 -14 AGGTGCTGACGCGGCTCCTCCC 4 1 1 AGGGCGACGC 0.775762 -119 GGGATCTTGACGCCTCCGGTACCTTTGGTACA 4 58 1 CGCTCGGTAC 0.843836 -62 GTGATGGAGCAGTCACGGGCAAACGGAGCGGG 5 44 1 AGTACGGCAA 0.503115 -38 CGCCGCCGCTTACACGCCCGCTCCG 5 67 0 CGCGCTACAC 0.938991 -15 CCGAGAATTCAGCGACGCGCGGGTGTCGGCAG 7 29 1 AGCACCGCGG 0.868202 -43 CTGTACCGCACGCTGCCGACACCCGCGCGTCG 7 41 0 CGCGCGACAC 0.99251 -31 CAGCTGGCGTCTCCACTCGCACAGAAACTGCT 8 43 1 CTCACCGCAC 0.964076 -53 CTCGCACAGAAACTGCTCGTACGCGGCTATGG 8 58 1 AACGCCGTAC 0.876828 -38 CGACTCAGTCACCAGCACACACGCCGGAGAAA 9 30 0 ACCGCCACAC 0.982552 -43 AAAAAATATAAGGAGCACACAC 10 1 0 AGGGCCACAC 0.953753 -171 ACACACCTCTAGCCTCTCGCAAGACAGTTTCG 10 40 0 AGCTCCGCAA 0.782866 -132 CCTTGACAGAATTCGCACACACCTCTAGCCTC 10 56 0 ATTGCCACAC 0.825589 -116 *** ** ***** Masking position 6 Map Score: 46.2143 Number of sites scoring better than the average of aligned sites = 4146 Number in coding regions = 3838 Number in noncoding regions = 308 Number of orfs with sites within 600 bp upstream = 181 Fraction of orfs with sites within 600 bp upstream = 0.0290716 Motif number 2 ACTTGAACTCCCACGCCGGTGAAGGCACTA 1 12 1 CCACGCCGGT 0.889606 -289 GAATTGGCAGACACGCTAGCTTCAGGTGCT 1 41 0 ACACGCTAGC 0.977691 -260 ATTTTGTCAAGTACGCCGCCTTTGCATCCC 1 151 0 GTACGCCGCC 0.970169 -150 CAATTCCAATACACGCTGCCCGCGGCGCTG 1 183 1 ACACGCTGCC 0.994987 -118 AGCTAATAGCCCACGGCGCCACGCGCAGCG 1 208 0 CCACGGCGCC 0.953084 -93 ACGTACACTTACACGCTGCCTACCGTGCAC 2 53 0 ACACGCTGCC 0.994987 -248 GCAGCCGCTGATACGCCGCAAGCTGTCTTC 3 36 0 ATACGCCGCA 0.837251 -240 TTCAGAGAACAGACGCGCGCGATCACACAA 3 74 0 AGACGCGCGC 0.85058 -202 CCATGTACTCGCACGCTCTCATAGGCATAC 3 256 0 GCACGCTCTC 0.849715 -20 GCCGCCGCTTACACGCCCGCTCCGTTTGCC 5 61 0 ACACGCCCGC 0.991031 -21 TCCCTCCCACACACGGTGGCGCCCAAGACG 6 13 0 ACACGGTGGC 0.970573 -74 CCCCTGTACCGCACGCTGCCGACACCCGCG 7 46 0 GCACGCTGCC 0.993128 -26 GTGCGAGTGGAGACGCCAGCTGAGCACTGC 8 35 0 AGACGCCAGC 0.956567 -61 ATCGGTCTGGACGCTACCATAGCCGCGT 8 78 0 GGACGCTACC 0.909693 -18 TCACCAGCACACACGCCGGAGAAACTATAC 9 24 0 ACACGCCGGA 0.973702 -49 ********** Masking position 3 Map Score: 26.8627 Number of sites scoring better than the average of aligned sites = 492 Number in coding regions = 445 Number in noncoding regions = 47 Number of orfs with sites within 600 bp upstream = 42 Fraction of orfs with sites within 600 bp upstream = 0.0067459 Motif number 3 CGGCGCCACGCGCAGCGCCGCGGGCAGCGT 1 195 0 CGCAGCGCCG 0.72342 -106 CGGCGCTGCGCGTGGCGCCGTGGGCTATTA 1 205 1 CGTGGCGCCG 0.717865 -96 GGGCTATTAGCTCAGCTGGTAGAGCAACGC 1 226 1 CTCAGCTGGT 0.532498 -75 CATCATGGCTCAGAGGTGGGATTG 1 287 1 CAGAGGTGGG 0.639629 -14 TGTAAGTGTACGTGGCGGGCACAGGTGAAG 2 70 1 CGTGGCGGGC 0.811516 -231 CCCCTACCGACACAGCCCGGGTTAAAAGCA 2 133 0 CACAGCCCGG 0.89377 -168 TTTGGGTACGCGCAGGGACGTGGAGGGACT 2 163 1 CGCAGGGACG 0.623816 -138 GTTTTTTTACAGCAGCGGCGTTGCTCGTTT 2 246 1 AGCAGCGGCG 0.915179 -55 CTTGGATGACCAGAGCAGCAGATAAAAACG 2 271 0 CAGAGCAGCA 0.539605 -30 ACACAACACGCACAGCAGCCGCTGATACGC 3 50 0 CACAGCAGCC 0.911796 -226 CTGGTAAAAACGGATCAGCGCGAGCAACAA 3 170 0 CGGATCAGCG 0.715392 -106 GATGAGGGGAAAGAGCGCGCTGGTAAAAAC 3 189 0 AAGAGCGCGC 0.405163 -87 GCTCCTCGGGAGGAGCCGCGTCAGCACCT 4 10 0 AGGAGCCGCG 0.777835 -110 GCTCCTCCCGAGGAGCCGGTTCCCCCTACA 4 24 1 AGGAGCCGGT 0.589021 -96 CCCTCGTGTTCTTAGCAGGGGGAGGAGAAA 4 97 1 CTTAGCAGGG 0.84674 -23 CACGGGCAAACGGAGCGGGCGTGTAAGCGG 5 57 1 CGGAGCGGGC 0.981137 -25 CGGGCGTGTAAGCGGCGGCG 5 72 1 AGCGGCGGCG 0.791973 -10 CTTTTCCATGCTCAGGGGCGAGGCAGTGCT 8 13 1 CTCAGGGGCG 0.909584 -83 CGAGGCAGTGCTCAGCTGGCGTCTCCACTC 8 31 1 CTCAGCTGGC 0.807398 -65 TGGACGCTACCATAGCCGCGTACGAGCAGT 8 69 0 CATAGCCGCG 0.897793 -27 AGAAACTATACGCAGCAGGGCAAG 9 5 0 CGCAGCAGGG 0.977214 -68 GTGCTGGTGACTGAGTCGCGGTTGTTACGG 9 44 1 CTGAGTCGCG 0.511463 -29 AGATGTTGACCGCAGCAGGGAAAAGGCGAT 10 142 1 CGCAGCAGGG 0.977214 -30 ********** Masking position 5 Map Score: 22.0113 Number of sites scoring better than the average of aligned sites = 2431 Number in coding regions = 2257 Number in noncoding regions = 174 Number of orfs with sites within 600 bp upstream = 118 Fraction of orfs with sites within 600 bp upstream = 0.0189528 Motif number 4 TATTTCCCACCATGGAAGGGTTTTCTTGCC 1 80 0 CATGGAAGGG 0.82035 -221 GAGCAGCTTTCAGGGCACGGGATGCAAAGG 1 133 1 CAGGGCACGG 0.972869 -168 TCGAATCCATCATGGCTCAGAGGTGGGATT 1 280 1 CATGGCTCAG 0.909913 -21 ATAGTACATGCAGGGAGCAGTTTGTGCACG 2 30 1 CAGGGAGCAG 0.986583 -271 AGTGTACGTGGCGGGCACAGGTGAAGAGGG 2 74 1 GCGGGCACAG 0.846454 -227 GCGGTAAATTCAGAGAACAGACGCGCGCGA 3 82 0 CAGAGAACAG 0.881113 -194 GGCAAAAGATGAGGGGAAAGAGCGCGCTGG 3 196 0 GAGGGGAAAG 0.90742 -80 GTGTTCTTAGCAGGGGGAGGAGAAATCG 4 102 1 CAGGGGGAGG 0.918383 -18 CGTGTAAAGTGATGGAGCAGTCACGGGCAA 5 36 1 GATGGAGCAG 0.868756 -46 CGCCCCTGAGCATGGAAAAGAA 8 3 0 CATGGAAAAG 0.916041 -93 TTTCCATGCTCAGGGGCGAGGCAGTGCTCA 8 15 1 CAGGGGCGAG 0.87332 -81 AGGGGCGAGGCAGTGCTCAGCTGGCGTCTC 8 26 1 CAGTGCTCAG 0.713052 -70 TTGACCGCAGCAGGGAAAAGGCGATAATAC 10 147 1 CAGGGAAAAG 0.974325 -25 ********** Masking position 5 Map Score: 11.4346 Number of sites scoring better than the average of aligned sites = 469 Number in coding regions = 420 Number in noncoding regions = 49 Number of orfs with sites within 600 bp upstream = 55 Fraction of orfs with sites within 600 bp upstream = 0.00883392 Motif number 5 AGCGTGTCTGCCAATTCCACCATCGAGGCAA 1 54 1 CCATTCCACC 0.785696 -247 GAGCTAATAGCCCACGGCGCCACGCGCAGCG 1 208 0 CCCCGGCGCC 0.870825 -93 CTACCGTGCACAAACTGCTCCCTGCATGTAC 2 33 0 CAACTGCTCC 0.393878 -268 CGAGTTTATCCCCTCTTCACCTGTGCCCGCC 2 83 0 CCCCTTCACC 0.966187 -218 CTGCGGCATACCGCATGTACCCCACACACAA 2 216 0 CCGATGTACC 0.852687 -85 TCGCGCTGATCCGTTTTTACCAGCGCGCTCT 3 177 1 CCGTTTTACC 0.889064 -99 TTTACCAGCGCGCTCTTTCCCCTCATCTTTT 3 192 1 CGCCTTTCCC 0.80146 -84 TCCCGAGGAGCCGGTTCCCCCTACAAGAGGG 4 29 1 CCGTTCCCCC 0.905281 -91 GATCTTGACGCCTCCGGTACCTTTGGTACAG 4 60 1 CCTCGGTACC 0.726125 -60 CACGAGGGTCCACTCTGTACCAAAGGTACCG 4 74 0 CACCTGTACC 0.899089 -46 CACGCCCGCTCCGTTTGCCCGTGACTGCTCC 5 49 0 CCGTTGCCCG 0.770822 -33 TCGCACCTTGCCGACTGTCCCTCCCACACAC 6 29 0 CCGCTGTCCC 0.983647 -58 ACGCCATCAACCAGTCGCACCTTGCCGACTG 6 43 0 CCATCGCACC 0.708163 -44 ACCGACCCCCTGTACCGCACGCTGCC 7 56 0 CCCCTGTACC 0.985998 -16 AGGGTATTATCGCCTTTTCCCTGCTGCGGTC 10 149 0 CGCTTTTCCC 0.65591 -23 *** ******* Masking position 10 Map Score: 7.65003 Number of sites scoring better than the average of aligned sites = 949 Number in coding regions = 842 Number in noncoding regions = 107 Number of orfs with sites within 600 bp upstream = 82 Fraction of orfs with sites within 600 bp upstream = 0.0131706 Motif number 6 CAAGGGATTAGAGCAGCTTTCAGGGCACGGG 1 123 1 GAGCAGCTTC 0.95482 -178 ACGGCGCCACGCGCAGCGCCGCGGGCAGCGT 1 195 0 GCGCAGCCCG 0.982395 -106 TCAGCTGGTAGAGCAACGCCCTTTTAAGGCG 1 237 1 GAGCAACCCC 0.991818 -64 AGATAAAAACGAGCAACGCCGCTGCTGTAAA 2 251 0 GAGCAACCCG 0.995343 -50 GGATCAGCGCGAGCAACAATCCACTAAATAC 3 158 0 GAGCAACATC 0.955676 -118 GGCATACTGCGAGCAACTCGGATAATAACGG 3 232 0 GAGCAACCGG 0.983845 -44 TAAAGTGATGGAGCAGTCACGGGCAAACGGA 5 40 1 GAGCAGTACG 0.888038 -42 GGGACTCTCTGAGCAACCTTGCGACAAGATC 10 87 0 GAGCAACTTG 0.972288 -85 ******* *** Masking position 5 Map Score: 9.09807 Number of sites scoring better than the average of aligned sites = 127 Number in coding regions = 118 Number in noncoding regions = 9 Number of orfs with sites within 600 bp upstream = 8 Fraction of orfs with sites within 600 bp upstream = 0.00128493 Motif number 7 CCACCATCGAGGCAAGAAAACCCTTCCATGGTGG 1 70 1 GGCAAAACCT 0.984736 -231 CTCTACCAGCTGAGCTAATAGCCCACGGCGCCAC 1 216 0 TGAGAAACCC 0.940147 -85 ACCGCTGAAAGGCAGGAATAGGCCGTGAGTGTGC 3 107 1 GGCAAAAGCC 0.95846 -169 AGGTACCGGAGGCGTCAAGATCCCCTCTTGTAGG 4 48 0 GGCGAAACCC 0.994641 -72 TGAGCAACCTTGCGACAAGATCCTTGACAGAATT 10 75 0 TGCGAAACCT 0.984749 -97 GCAGGGAAAAGGCGATAATACCCTCC 10 156 1 GGCGAAACCT 0.994781 -16 **** ** * *** Masking position 7 Map Score: 3.3129 Number of sites scoring better than the average of aligned sites = 36 Number in coding regions = 28 Number in noncoding regions = 8 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555 Motif number 8 AGAGCAGCTTTCAGGGCACGGGATGCAAAG 1 132 1 TCAGGGCACG 0.903286 -169 CAGGGAGCAGTTTGTGCACGGTAGGCAGCG 2 40 1 TTTGTGCACG 0.889803 -261 AGGCAGCGTGTAAGTGTACGTGGCGGGCAC 2 62 1 TAAGTGTACG 0.940135 -239 CACACAGCGATATGGTTACGAGTTTATCCC 2 102 0 TATGGTTACG 0.87075 -199 TCGGTAGGGGTTTGGGTACGCGCAGGGACG 2 153 1 TTTGGGTACG 0.958227 -148 GAATAGGCCGTGAGTGTGCGTCGCTTGTGT 3 122 1 TGAGTGTGCG 0.866395 -154 ACTCGGATAATAACGGCACGAAGGCAAAAG 3 218 0 TAACGGCACG 0.878543 -58 GCAGTATGCCTATGAGAGCGTGCGAGTACA 3 253 1 TATGAGAGCG 0.735912 -23 GTACGAGCAGTTTCTGTGCGAGTGGAGACG 8 50 0 TTTCTGTGCG 0.757905 -46 CGTACGCGGCTATGGTAGCGTCCAGACCGA 8 75 1 TATGGTAGCG 0.767967 -21 TTATATTTTTTAAGGGTGCGAAACTGTCTT 10 22 1 TAAGGGTGCG 0.980152 -150 ********** Masking position 1 Map Score: 5.36919 Number of sites scoring better than the average of aligned sites = 501 Number in coding regions = 449 Number in noncoding regions = 52 Number of orfs with sites within 600 bp upstream = 48 Fraction of orfs with sites within 600 bp upstream = 0.0077096 Motif number 9 TGTCAAGTACGCCGCCTTTGCATCCCGTGC 1 147 0 GCCGCCTTTG 0.948804 -154 ACACTTACACGCTGCCTACCGTGCACAAAC 2 49 0 GCTGCCTACC 0.922938 -252 TACGCCGCAAGCTGTCTTCCACAACGGAAA 3 25 0 GCTGTCTTCC 0.973242 -251 ACGGCCTATTCCTGCCTTTCAGCGGTAAAT 3 103 0 CCTGCCTTTC 0.924549 -173 GCCGTCTTGGGCGCCACCGT 6 1 1 GCCGTCTTGG 0.94838 -86 CTGAATTCTCGGCGTCTTTCTTTTACCTTT 7 11 0 GGCGTCTTTC 0.845342 -61 CCAGCTGAGCACTGCCTCGCCCCTGAGCAT 8 20 0 ACTGCCTCGC 0.875833 -76 AGGGTGCGAAACTGTCTTGCGAGAGGCTAG 10 34 1 ACTGTCTTGC 0.935286 -138 ********** Masking position 7 Map Score: 2.05618 Number of sites scoring better than the average of aligned sites = 282 Number in coding regions = 254 Number in noncoding regions = 28 Number of orfs with sites within 600 bp upstream = 27 Fraction of orfs with sites within 600 bp upstream = 0.00433665 Motif number 10 TGGTAGAGCAACGCCCTTTTAAGGCGTGGG 1 242 1 ACGCCCTTTT 0.826945 -59 TTACGAGTTTATCCCCTCTTCACCTGTGCC 2 87 0 ATCCCCTCTT 0.987062 -214 AGCGCGCTCTTTCCCCTCATCTTTTGCCTT 3 198 1 TTCCCCTCAT 0.828002 -78 AGGCGTCAAGATCCCCTCTTGTAGGGGGAA 4 43 0 ATCCCCTCTT 0.987062 -77 CGCCGCCGCTTACACGCCCGC 5 71 0 GCCGCCGCTT 0.923576 -11 TGCTCAGAGAGTCCCCGTTTCTTTTTCCCG 10 103 1 GTCCCCGTTT 0.953718 -69 GGAGGGTATTATCGCCTTTTCCCTGCTGCG 10 152 0 ATCGCCTTTT 0.939711 -20 ********** Masking position 10 Map Score: 2.61069 Number of sites scoring better than the average of aligned sites = 100 Number in coding regions = 87 Number in noncoding regions = 13 Number of orfs with sites within 600 bp upstream = 12 Fraction of orfs with sites within 600 bp upstream = 0.0019274 Motif number 11 TGCTAGTGCCTTCACCGGCGTGGGAGTTCA 1 15 0 TTCACCGGCG 0.976615 -286 CGCCGCCTTTGCATCCCGTGCCCTGAAAGC 1 138 0 GCATCCCGTG 0.700048 -163 TCCAATACACGCTGCCCGCGGCGCTGCGCG 1 187 1 GCTGCCCGCG 0.924993 -114 TTATCCCCTCTTCACCTGTGCCCGCCACGT 2 79 0 TTCACCTGTG 0.723967 -222 TGTGCTGCTTTTAACCCGGGCTGTGTCGGT 2 128 1 TTAACCCGGG 0.843388 -173 CTGATCCGTTTTTACCAGCGCGCTCTTTCC 3 182 1 TTTACCAGCG 0.833837 -94 CTGACGCGGCTCCTCCCGAGGAGCCGGTTC 4 16 1 TCCTCCCGAG 0.854213 -104 CTGTACCAAAGGTACCGGAGGCGTCAAGAT 4 61 0 GGTACCGGAG 0.671422 -59 GCCCGCTCCGTTTGCCCGTGACTGCTCCAT 5 47 0 TTTGCCCGTG 0.863626 -35 GAGCGGGCGTGTAAGCGGCGGCG 5 69 1 GTAAGCGGCG 0.618883 -13 AGGGTAACCTTTACCCGAGACTCACGCCA 6 68 0 TTTACCCGAG 0.936419 -19 GCACGCTGCCGACACCCGCGCGTCGCTGAA 7 36 0 GACACCCGCG 0.920075 -36 TGCGTATAGTTTCTCCGGCGTGTGTGCTGG 9 21 1 TTCTCCGGCG 0.943293 -52 ********** Masking position 6 Map Score: 4.95637 Number of sites scoring better than the average of aligned sites = 575 Number in coding regions = 520 Number in noncoding regions = 55 Number of orfs with sites within 600 bp upstream = 48 Fraction of orfs with sites within 600 bp upstream = 0.0077096 Motif number 12 GCACAGGTGAAGAGGGGATAAACTCGTAAC 2 88 1 AGAGGGGATA 0.965628 -213 CCCCTCTTGTAGGGGGAACCGGCTCCTCGG 4 31 0 AGGGGGAACC 0.931796 -89 TCCCCCTACAAGAGGGGATCTTGACGCCTC 4 44 1 AGAGGGGATC 0.993225 -76 CCTTTGGTACAGAGTGGACCCTCGTGTTCT 4 79 1 AGAGTGGACC 0.968079 -41 AGCGTGCGGTACAGGGGGTCGGT 7 59 1 ACAGGGGGTC 0.949386 -13 ********** Masking position 1 Map Score: 0.450598 Number of sites scoring better than the average of aligned sites = 37 Number in coding regions = 35 Number in noncoding regions = 2 Number of orfs with sites within 600 bp upstream = 2 Fraction of orfs with sites within 600 bp upstream = 0.000321234 Motif number 13 ********** No masking Map Score: -2.3992e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: -2.3992e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: -2.3992e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0