AlignACE 3.0 10/20/99 AlignACE2 -i AA/AA_fusions002_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944234330 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 aq_027 72 hypothetical protein #1 aq_028 46 putative protein #2 aq_035 32 hypothetical protein #3 aq_083 264 hypothetical protein #4 folK 300 folate biosynthesis 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase #5 aq_265 104 hypothetical protein #6 aq_340 28 hypothetical protein #7 aq_341 300 hypothetical protein #8 aq_367 44 hypothetical protein #9 gidA2 32 glucose inhibited division protein A #10 aq_1151 48 hypothetical protein #11 lysC 35 aspartokinase #12 aq_1455 300 hypothetical protein Motif 1 TCTTCTAACGGAAGCGGTAAAGGAAAACCTATTCGTA 7 92 1 TAGAAACTTATACGGAAAATTACGAATAC 10 2 1 GAAAGCCGTAGAAGAGCTCAAGGAAAAGAACTTC 0 48 1 AGCTTTATCAGGTGCAATAAAGGAAAGTTCAAGT 4 276 1 TATACAGAAGAGCCAAAAAAGGGAAAAATCCCATAGT 3 160 0 AAAAATATACAATAAAGAACTGGAAAAAAGGCAGAAT 7 36 1 ATTGCTGGACGTTCCATTTCTGGAAAGGATAAC 3 241 1 TGCAACCATTGTATCTTTAAAGGAGAAGGAGGT 12 277 1 CTGAGGAGGAAAAACCTCACGGGAAAGGTTACTATGG 3 130 1 GTATGTACTTGAGGATAAGAAGGAAGAAGAGAATATC 12 139 1 TAATGATTATATTTAAAGTAGGGAAAATAA 5 84 1 GAATGAGTTTATAAACTTTCTGGAAAATTCCCATTAC 7 220 1 GCCCATCTTTGAAGCAAAAACGGGAAATTTGGCAGGA 7 140 1 CAGGATTTGAGGCACTGGTCAGGATAAAGAAGGAAAG 7 172 1 ATTTGTTTTAAGATATTCTAAGGAGAGGTTAGTATGA 4 205 0 CCTTGTAAAAGTAAACGATAAAGAAAACAAGAACGCT 3 95 1 AAAAGAAATAAACAAGATGAAAGAAAAGATAAAGTAT 12 64 1 ATGGGCTTTAAAGGAAGTGACGGATAAAATAAAAAA 7 274 1 ACCTTACTCTAAAAAAGAGCTGGAAGAAACGCCCGAG 3 23 1 GAGCATTTCGGGCGTTCCGAAGGAAAGGGCAAATTTA 12 13 0 CGAGAAGGTGGGAAATCGTAAAGAGAATAGCCCCTTC 3 56 1 AAGCTCGCCGGAAGCGTTGCAAGAGAAGGTGCTATTG 4 85 0 CCATTACCTTGATTACTTCAGGGAATGGGCTTTAAAG 7 250 1 CTTTAAATATAATCATTATCAGGAGTAATCTTATGGA 5 65 0 CTTCAAAGATGGGCTGGTAATGGAATACGAATAGGTT 7 117 0 ** * * ****** MAP Score: 20.6729 Motif 2 ACACCCCAAGGACAGGGAAAAAGCTCTGAAAG 0 21 1 CTCTAAAAAAGAGCTGGAAGAAACGCCCGAGA 3 29 1 AACGCCCGAGAAGGTGGGAAATCGTAAAGAGA 3 50 1 CAAGAACGCTGAGGAGGAAAAACCTCACGGGA 3 122 1 GAAGAGCCAAAAAAGGGAAAAATCCCATAGTA 3 159 0 ATCCTTTCCAGAAATGGAACGTCCAGCAATAT 3 239 0 CCCATCTAGTAAAGAGGGACAAGTTCGGAAGA 4 18 0 CCAAAGCTAAAAATTGGAAGGATTGAAGTAGA 4 168 0 ATTATATTTAAAGTAGGGAAAATAA 5 89 1 GCCAAACAGGAAGGTTATAACGTAG 7 3 1 ATACAATAAAGAACTGGAAAAAAGGCAGAATC 7 42 1 CTTTGAAGCAAAAACGGGAAATTTGGCAGGAT 7 146 1 GGTCAGGATAAAGAAGGAAAGATACATTACCC 7 188 1 AGAAATAAACAAGATGAAAGAAAAGATAAAGT 12 67 1 ACTTGAGGATAAGAAGGAAGAAGAGAATATCC 12 145 1 GTAAGTAGCAAAGCCGAAAAGTGGGGAGTCAA 12 192 0 *** ******* MAP Score: 19.2356 Motif 3 TTCCATTTCTGGAAAGGATAAC 3 252 1 TACACCCCAAGGACAGGGAAAAAGCTCTGAA 0 20 1 TAAGGACTTCAGAAAGGTAAAGCTTTACAAC 12 241 1 AAACCTCACGGGAAAGGTTACTATGGGATTT 3 141 1 AACGGAAGCGGTAAAGGAAAACCTATTCGTA 7 98 1 GCGTTCCGAAGGAAAGGGCAAATTTATCA 12 8 0 GATATTCTAAGGAGAGGTTAGTATGAACTTA 4 200 0 TTGAGGCACTGGTCAGGATAAAGAAGGAAAG 7 178 1 TCTTTTTTAGAGTAAGGTTAAATTAGTAGTT 3 10 0 TGCTTTCGTTGTAAAGGAAACCGCTTAAAAA 3 197 1 ACAAGATGAAAGAAAAGATAAAGTATCCCGA 12 75 1 AGAAGAGCCAAAAAAGGGAAAAATCCCATAG 3 161 0 AATTACTTTCATAGAGGTAAAAAAGG 5 5 0 CTTCAGCCTTGTAAAAGTAAACGATAAAGAA 3 89 1 TCGCTATACAAGAGAAGTTAAAAGTGAGTTC 12 104 0 ATCAGGTGCAATAAAGGAAAGTTCAAGT 4 282 1 TTCCGCTGTGGAACAGGCTACAGATATCCCC 4 47 0 AAAAGTAAACGATAAAGAAAACAAGAACGCT 3 101 1 ******* *** MAP Score: 16.932 Motif 4 ATTTTTTTACCTCCTGAAAAAATCTAAAATTAAATTTTAAATAG 1 11 1 ATACTAACCTCTCCTTAGAATATCTTAAAACAAATTTTAAGATA 4 207 1 CGGGTCCTATCTCCCCGTAAGTAGCAAAGCCGAAAAGTGGGGAG 12 196 0 GCCCGAAATGCTCCTTCAAAGCACACAAAAAGAAATAAACAAGA 12 37 1 AAGCTCTGAAAGCCGTAGAAGAGCTCAAGGAAAAGAACTTC 0 41 1 CATAAGATTACTCCTGATAATGATTATATTTAAAGTAGGGAAAA 5 67 1 CTGGAAGAAACGCCCGAGAAGGTGGGAAATCGTAAAGAGAATAG 3 42 1 TAGCCCCTTCAGCCTTGTAAAAGTAAACGATAAAGAAAACAAGA 3 83 1 ATTACCAGCCCATCTTTGAAGCAAAAACGGGAAATTTGGCAGGA 7 133 1 ACGAAACTGCAACCATTGTATCTTTAAAGGAGAAGGAGGT 12 270 1 GTACATACTGCCTCGCTATACAAGAGAAGTTAAAAGTGAGTTCG 12 103 0 TAAAGGAAACCGCTTAAAAAGCCTATAATACATATTGCTGGACG 3 208 1 * ** ** ** *** MAP Score: 9.60211 Motif 5 CTACACCCCAAGGACAGGGAAAAAGCTCTGAAA 0 19 1 AGATTTTTTCAGGAGGTAAAAAAATC 1 3 0 GAAACGCCCGAGAAGGTGGGAAATCGTAAAGAG 3 48 1 GTAAAAGTAAACGATAAAGAAAACAAGAACGCT 3 99 1 AACAAGAACGCTGAGGAGGAAAAACCTCACGGG 3 120 1 AGAAGAGCCAAAAAAGGGAAAAATCCCATAGTA 3 159 0 ATTACTTTCATAGAGGTAAAAAAGG 5 2 0 CAGGAAGGTTATAACGTAGTAAAAATATACAAT 7 16 1 ATATACAATAAAGAACTGGAAAAAAGGCAGAAT 7 40 1 AATCTTCTAACGGAAGCGGTAAAGGAAAACCTA 7 90 1 ATCTTTGAAGCAAAAACGGGAAATTTGGCAGGA 7 144 1 ACTGGTCAGGATAAAGAAGGAAAGATACATTAC 7 185 1 GAAGTGACGGATAAAATAAAAAA 7 287 1 CAAAGCACACAAAAAGAAATAAACAAGATGAAA 12 53 1 AGAAATAAACAAGATGAAAGAAAAGATAAAGTA 12 67 1 ACTTGAGGATAAGAAGGAAGAAGAGAATATCCT 12 145 1 * ** * ****** MAP Score: 9.40121 Motif 6 GAACGCTGAGGAGGAAAAACCTCACGGGAAAGGTTACTATGG 3 125 1 AGGTTATAACGTAGTAAAAATATACAATAAAGAACTGGAAAA 7 21 1 AAGTAGCAAAGCCGAAAAGTGGGGAGTCAAAGTTCTGAGATA 12 180 0 ATATGCTTTCGTTGTAAAGGAAACCGCTTAAAAAGCCTATAA 3 194 1 CCCCTTCAGCCTTGTAAAAGTAAACGATAAAGAAAACAAGAA 3 86 1 CTAAAAAAGAGCTGGAAGAAACGCCCGAGAAGGTGGGAAATC 3 31 1 GTTGAAAATCTACACCCCAAGGACAGGGAAAA 0 0 1 AGCTCTGAAAGCCGTAGAAGAGCTCAAGGAAAAGAACTTC 0 42 1 GGAAAAGCTCGCCGGAAGCGTTGCAAGAGAAGGTGCTATTGG 4 84 0 TTGCTACTTACGGGGAGATAGGACCCGATAAGGACTTCAGAA 12 213 1 TTTCATTTATATAGAAAATCTTCTAACGGAAGCGGTAAAGGA 7 74 1 GGACTTCAGAAAGGTAAAGCTTTACAACGAAACTGCAACCAT 12 244 1 TTTTTTACCTCCTGAAAAAATCTAAAATTAAATTTTAAATAG 1 13 1 GCCCGAGAAGGTGGGAAATCGTAAAGAGAATAGCCCCTTCAG 3 53 1 GTATAGCGAGGCAGTATGTACTTGAGGATAAGAAGGAAGAAG 12 126 1 * * *** ** *** MAP Score: 8.09524 Motif 7 ACGGCTTTCAGAGCTTTTTCCCTGTCCTTGG 0 26 0 CCTTTCCCGTGAGGTTTTTCCTCCTCAGCGT 3 127 0 AGGTTACTATGGGATTTTTCCCTTTTTTGGC 3 155 1 CGCTTCCGGCGAGCTTTTCCCAGGATATACC 4 106 1 TCAAGGTAATGGGAATTTTCCAGAAAGTTTA 7 231 0 *** ******* MAP Score: 7.1569 Motif 8 ACGGCTTTCAGAGCTTTTTCCCTGTCCTTGG 0 26 0 TCTTTTCCTTGAGCTCTTCTACGGCTTTCAG 0 46 0 AAGGCTGAAGGGGCTATTCTCTTTACGATTT 3 68 0 AGGTTACTATGGGATTTTTCCCTTTTTTGGC 3 155 1 TACATATTGCTGGACGTTCCATTTCTGGAAA 3 236 1 GGATATCTGTAGCCTGTTCCACAGCGGAAAC 4 49 1 CGACACCAATAGCACCTTCTCTTGCAACGCT 4 79 1 CGCTTCCGGCGAGCTTTTCCCAGGATATACC 4 106 1 AGCTTTTCCCAGGATATACCAACACCCATTC 4 117 1 AGGATTGAAGTAGATATACCCATAATTCAAG 4 151 0 AATTTGTTTTAAGATATTCTAAGGAGAGGTT 4 212 0 CTTCCGTTAGAAGATTTTCTATATAAATGAA 7 75 0 CAAGGTAATGGGAATTTTCCAGAAAGTTTAT 7 230 0 CTTCCTTTAAAGCCCATTCCCTGAAGTAATC 7 260 0 CTGAGATATGAGGATATTCTCTTCTTCCTTC 12 157 0 ***** ***** MAP Score: 5.66359 Motif 9 GTTGAAAATCTACACCCCAAGGAC 0 2 1 TTACCTCCTGAAAAAATCTAAAATTAAATTTT 1 17 1 TCTTTTTTAGAGTAAGGTTAAATTAGTAGTT 3 9 0 CCTTCAGCCTTGTAAAAGTAAACGATAAAGAA 3 88 1 GTATGAACTTACCAAAGCTAAAAATTGGAAGG 4 179 0 AATATCTTAAAACAAATTTTAAGATAGAATTA 4 225 1 GGTGCAATAAAGGAAAGTTCAAGT 4 286 1 GCCAAACAGGAAGGTTATAACGTAGTAAA 7 7 1 GTTATAACGTAGTAAAAATATACAATAAAGAA 7 23 1 AGGATAAAGAAGGAAAGATACATTACCCGAAT 7 192 1 GGAATTTTCCAGAAAGTTTATAAACTCATTCG 7 219 0 GGAATATTTTACGAAACTTAAAATATGTATAC 8 11 1 ATTAAGTAAATGTATACATATTTTAA 8 28 0 AATTAATAAATTTTAAGGTAAAATAT 11 4 1 GGCGTTCCGAAGGAAAGGGCAAATTTATCA 12 8 0 ACAAGATGAAAGAAAAGATAAAGTATCCCGAA 12 75 1 TCGCTATACAAGAGAAGTTAAAAGTGAGTTCG 12 103 0 ATAAGGACTTCAGAAAGGTAAAGCTTTACAAC 12 240 1 ** **** **** MAP Score: 4.34205 Motif 10 GCTCTGAAAGCCGTAGAAGAGCTCAAGGAAAAGAACTTC 0 43 1 TTTTTTACCTCCTGAAAAAATCTAAAATTAAATTTTAAATAGG 1 13 1 ATACCTTATAAAGTATATATACTACATTCCCT 2 5 0 GTAAAGGAAACCGCTTAAAAAGCCTATAATACATATTGCTGGAC 3 207 1 CTGTTCCACAGCGGAAACGACACCAATAGCACCTTCTCTTGCAA 4 62 1 ACCCATTCCGCCTTGAATTATGGGTATATCTACTTCAATCCTTC 4 140 1 ACTAACCTCTCCTTAGAATATCTTAAAACAAATTTTAAGATAGA 4 209 1 TAAGATTACTCCTGATAATGATTATATTTAAAGTAGGGAAAATA 5 69 1 CTCCGTAAAGAATTAGAATAATACATCT 6 2 0 AGGCACTGGTCAGGATAAAGAAGGAAAGATACATTACCCGAATG 7 181 1 TTGATTACTTCAGGGAATGGGCTTTAAAGGAAGTGACGGATAAA 7 258 1 CCGAAATGCTCCTTCAAAGCACACAAAAAGAAATAAACAAGATG 12 39 1 **** * ** ** * MAP Score: 1.20999