AlignACE 3.0 10/20/99
AlignACE2 -i AA/AA_fusions006_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944234468
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	aq_438	238	hypothetical protein
#1	aq_439	40	putative protein
#2	aq_1630	71	hypothetical protein
#3	aq_1631	52	putative protein
#4	aq_1632	167	hypothetical protein
#5	guaB	300	inosine monophosphate dehydrogenase
#6	pcnB2	49	poly A polymerase

Motif 1
AATAATAGAAGTCCCTTTTGAAAAAGACCT	0	42	0
AGCGTTTTTGGTTCCGTTTACGGATTTCAG	0	114	1
TTTTCTTTTCCCTTCTTTTGAAAGGTATAA	3	20	1
ATTTCAACCTGCCCCTTATAATTTAGAATT	4	40	0
ATTCTTAACACTTTCTTTTAAAAAAATCCC	4	131	1
    ACTTCACCTCCTTTTAGGGATTTTTT	4	151	0
ACTCACGATGCCCGCTTTTGATATTGACAC	5	199	1
TTTTACTGCTGTTCCTTTAAGTCCTTAATG	5	232	0
AAAATCCTTTCCTCCTTTTTCCTTTTAACC	5	259	1
         TGCTTCTTTTGCTCTTAATCA	6	1	1
AAAATATATACGCCCTTTTGTATGATTAAG	6	23	0
          **********
MAP Score: 10.8522

Motif 2
AGACCATGATCCCGAGCTTTATAGCCTCAGTTG	0	73	1
TAGTATAACGCCCGAAAGTTATAATAAAGTTAA	1	17	1
       CTTCCCGCACCCAGTATAAAAAATCT	4	3	1
AAAATTTCAACCTGCCCCTTATAATTTAGAATT	4	40	0
CTTACGACTTCCTGAACGTTGTAGAAGCTCCCG	5	108	1
TGTAGAAGCTCCCGACAACGACACTATACTCAA	5	127	1
ACTCACGATGCCCGCTTTTGATATTGACACACT	5	199	1
          ***** * * ***
MAP Score: 5.08708

Motif 3
CCCGAAAGAATTAAGGAAGTTGACGAGGAA	5	26	1
GACACACTCATTAAGGACTTAAAGGAACAG	5	224	1
TTCTACAACGTTCAGGAAGTCGTAAGGACC	5	104	0
TTGGTTCCGTTTACGGATTTCAGCCGATAT	0	121	1
TCACCTCCTTTTAGGGATTTTTTTAAAAGA	4	144	0
GTCCAGCCATTTAAAGAAGTTGATTTAATA	0	162	1
AAAGAAAGTGTTAAGAATTTTTTAAGAAAC	4	119	0
CCCGCGTACGTAAAAGAATTATTAAATCAA	0	181	0
GAAAAAGGAGGAAAGGATTTTTACTGCTGT	5	250	0
          **********
MAP Score: 3.61846

Motif 4
GTTATTTGCGCACTCTTTACGAGGGTTTAC 	0	218	1
   CTTCCCGCACCCAGTATAAAAAATCTCA	4	7	1
TCAAAATCCTCGCTCAGTACGCCTTAATGGG	5	75	1
AAGTCGTAAGGACCCATTAAGGCGTACTGAG	5	87	0
GCTTCTACAACGTTCAGGAAGTCGTAAGGAC	5	105	0
ACCATAAGGACACTCACGATGCCCGCTTTTG	5	188	1
GATATTGACACACTCATTAAGGACTTAAAGG	5	218	1
          ********* *
MAP Score: 2.15199

Motif 5
ACCATGATCCCGAGCTTTATAGCCTCAGTTG	0	75	1
CTTCAAACGTCCAGCCATTTAAAGAAGTTGA	0	154	1
AAGTTATTTGCGCACTCTTTACGAGGGTTTA	0	216	1
TTCAACCCTCCAAGCTTTTTAATCTACTGAA	2	47	0
     CTTCCCGCACCCAGTATAAAAAATCT	4	5	1
AAAATTTCAACCTGCCCCTTATAATTTAGAA	4	42	0
AATCAAAATCCTCGCTCAGTACGCCTTAATG	5	73	1
ACTCACGATGCCCGCTTTTGATATTGACACA	5	199	1
TTGATATTGACACACTCATTAAGGACTTAAA	5	216	1
          * *********
MAP Score: 0.57519