AlignACE 3.0 10/20/99
AlignACE2 -i AA/AA_fusions008_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944234500
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	rpsQ	232	ribosomal protein S17
#1	aroE	266	shikimate 5-dehydrogenase
#2	aroA	37	5-enolpyruvylshikimate-3-phosphate synthetase
#3	aq_2175	101	putative protein

Motif 1
TGAAAGATGTGGGAAAGAGAGAGAAAGAAGTTCT	0	15	1
AGAACCCCATGGAAATGAGGAAGGTAAAGAGGAA	0	154	1
AAATGAGGAAGGTAAAGAGGAACATAGCTAGAGT	0	166	1
GAGTTTTGACGGTTATAAGGGAAAAACAGTTGAG	0	196	1
AATAAGGCCTGCTCTTAAGGAACATCAAGGCGAG	1	60	1
CAAGCTCGTAGATATTAAGGAAGACACCGTTTAC	1	96	1
TATCAACGAGGTTTTTGAGGGATATGTCTACAAC	1	163	0
CGTTGATACAGTAATTAAGGGAAACGTCAAGTGG	1	189	1
          *   ******** *
MAP Score: 11.8652

Motif 2
TACAGGAACTTGAAAAGCTATTGGACGAACTTAA	0	73	1
AAACTTGAATTGACAAGACTCAGGTTTAAAAAAC	0	105	1
AGAACCCCATGGAAATGAGGAAGGTAAAGAGGAA	0	154	1
GAAAAACAGTTGAGAGGTGAAGGGTA        	0	216	1
  AGTATGGCTGAAATGAAGAAGGTTGAAGAAAT	1	8	1
CTCCTTCAAAGGAAAGGTAAACGGTGTCTTCCTT	1	112	0
AGTAATTAAGGGAAACGTCAAGTGGGTTAAGAAA	1	198	1
          ***** *  ** **
MAP Score: 6.82772

Motif 3
   GGTGGTGAAAGATGTGGGAAAGAGAGAGAAAGAA	0	7	1
AAAGAGAGAGAAAGAAGTTCTTAGAAGATATTAGAAA	0	28	1
AAGATATTAGAAAAAAGAGCTTACAGGAACTTGAAAA	0	52	1
ACTCAGGTTTAAAAAACAAGTTCAGGGTCTTGAGAAC	0	122	1
ACCCCATGGAAATGAGGAAGGTAAAGAGGAACATAGC	0	157	1
GTATGGCTGAAATGAAGAAGGTTGAAGAAATTGAAAA	1	11	1
CTTTCCTTTGAAGGAGGTTGCTCCAGCTGTCCGGTTG	1	130	1
TTACTGTATCAACGAGGTTTTTGAGGGATATGTCTAC	1	166	0
CAAGTGGGTTAAGAAAGTAGAAATAACTCAGCAGAAA	1	216	1
TTGGGAGCCGAAGGTCGCCGGTTCAAGTCCGGCCGCC	3	17	0
          ** ** *  * *  ***
MAP Score: 6.34559

Motif 4
AAAGCTATTGGACGAACTTAAACTTGAATTGACA	0	86	1
GGAACATCAAGGCGAGCTCAAGCTCGTAGATATT	1	78	1
ATTGCTGTATGTCGAATTTCTGCTGAGTTATTTC	1	235	0
TATCGGGGCGGCCGGACTTGAACCGGCGACCTTC	3	11	1
GACTTGAACCGGCGACCTTCGGCTCCCAAAGCCG	3	25	1
AGCTCAGGTGGTAGAGCGTCGGCTTTGGGAGCCG	3	44	0
          * *** ***  ***
MAP Score: 5.93988

Motif 5
ATTGGACGAACTTAAACTTGAATTGACAAGA	0	92	1
GAACTTGTTTTTTAAACCTGAGTCTTGTCAA	0	114	0
ATGGGGTTCTCAAGACCCTGAACTTGTTTTT	0	133	0
TGTTTTTCCCTTATAACCGTCAAAACTCTAG	0	193	0
TTTTCAATTTCTTCAACCTTCTTCATTTCAG	1	17	0
AGGGATATGTCTACAACCGGACAGCTGGAGC	1	149	0
GGCGGCCGGACTTGAACCGGCGACCTTCGGC	3	17	1
AGCCGACGCTCTACCACCTGAGCTACGCCCC	3	54	1
          *** *******
MAP Score: 5.54361

Motif 6
ACATCAAGGCGAGCTCAAGCTCGTAGATATTA	1	81	1
TTGAAGGAGGTTGCTCCAGCTGTCCGGTTGTA	1	137	1
GCCGGTTCAAGTCCGGCCGCCCCGATAC    	3	6	0
TTGAACCGGCGACCTTCGGCTCCCAAAGCCGA	3	28	1
TCAGGTGGTAGAGCGTCGGCTTTGGGAGCCGA	3	43	0
TCTACCACCTGAGCTACGCCCCGTCCCGAATA	3	63	1
          ***** * ****
MAP Score: 1.20532

Motif 7
TAAAAAACAAGTTCAGGGTCTTGAGAACCC	0	131	1
ATCAAGGCGAGCTCAAGCTCGTAGATATTA	1	83	1
GAAGGAGGTTGCTCCAGCTGTCCGGTTGTA	1	139	1
GGCTTTGGGAGCCGAAGGTCGCCGGTTCAA	3	28	0
GGCTCCCAAAGCCGACGCTCTACCACCTGA	3	45	1
          **********
MAP Score: 0.667717

Motif 8
CTTGTCAATTCAAGTTTAAGTTCGTCCAATAGCTT	0	87	0
GTTTAAAAAACAAGTTCAGGGTCTTGAGAACCCCA	0	128	1
TAGCTATGTTCCTCTTTACCTTCCTCATTTCCATG	0	161	0
AACATCAAGGCGAGCTCAAGCTCGTAGATATTAAG	1	80	1
CTTTCTTAACCCACTTGACGTTTCCCTTAATTACT	1	198	0
CTTGAACCGGCGACCTTCGGCTCCCAAAGCCGACG	3	27	1
CGACGCTCTACCACCTGAGCTACGCCCCGTCCCGA	3	57	1
          * **** * * ** *
MAP Score: 0.47223