AlignACE 3.0 10/20/99 AlignACE2 -i AA/AA_fusions008_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944234511 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 rpsS 112 ribosomal protein S19 #1 rplV 117 ribosomal protein L22 #2 rplP 61 ribosomal protein L16 #3 rpsQ 232 ribosomal protein S17 #4 nifU 186 NifU protein #5 aq_900 119 putative protein #6 aroE 266 shikimate 5-dehydrogenase #7 aroA 37 5-enolpyruvylshikimate-3-phosphate synthetase #8 aq_2170 300 hypothetical protein #9 aq_2175 101 putative protein Motif 1 CTTGTTCCAAGCTCCTTTAAATCCCATTTACTCT 0 16 0 GCCCACATATTCTCCCCTAAAGGCAAGAC 1 98 1 CTGCATAATTTCTTCTTCAATTTTCTTGAGGATT 2 16 0 AGCTTTTCAAGTTCCTGTAAGCTCTTTTTTCTAA 3 58 0 CTCAACTGTTTTTCCCTTATAACCGTCAAAACTC 3 196 0 GGGGCAAAAGGTTCCCGTAACGTCGTGAACTACG 5 25 0 CCTATTTCCATTTCCTTTATCTGTTTGGCGGTTT 5 72 0 CTCGCCTTGATGTTCCTTAAGAGCAGGCCTTATT 6 60 0 GTAAACGGTGTCTTCCTTAATATCTACGAGCTTG 6 96 0 GTTGTAGACATATCCCTCAAAAACCTCGTTGATA 6 163 1 CCACTTGACGTTTCCCTTAATTACTGTATCAACG 6 189 0 GAGGGTTAATTTTCCCGTATTTTTCATAGATTCC 8 93 0 GACAGGTTTCTCTCACTCATAAACATAACGACGG 8 205 0 GAGAGAAACCTGTCCCTCAATTACAAAGAGCAGT 8 225 1 CTACTAAAATTCTCATTTAACGTTTAGTATCTTA 8 269 1 * ******** * MAP Score: 17.0102 Motif 2 AAGAGAAACAGACTCATCGAGAACCCTGAGGAGTATT 0 47 1 TTAGAAAAAAGAGCTTACAGGAACTTGAAAAGCTATT 3 58 1 CATTTCCATGGGGTTCTCAAGACCCTGAACTTGTTTT 3 134 0 AAGTGTGCCCGGCGGGACTTGAACCCGCGACCCCGGG 4 24 1 GGACAGAGCACGGGGCTCCGGACCCCGGGGTCGCGGG 4 47 0 TTTGATTTCAGTCATAACGTAAACCTTGCAAATGAAT 4 118 1 CGTAGTTCACGACGTTACGGGAACCTTTTGCCCCGTT 5 25 1 TATCTGTTTGGCGGTTTCCGCAACCGGAACGGGGCAA 5 52 0 CCGCTATCAGTTCCAGAACCTGGCCTATTTCC 5 97 0 GTTTTTGAGGGATATGTCTACAACCGGACAGCTGGAG 6 150 0 GTATCGGGGCGGCCGGACTTGAACCGGCGACCTTCGG 9 10 1 * * ** ***** * MAP Score: 15.2044 Motif 3 AAATGGGATTTAAAGGAGCTTGGAACAAGAGAAA 0 21 1 GATGGGACAGTTAAGGATTAAGGACAAATCTCAG 1 19 1 GAAGAAATCCTCAAGAAAATTGAAGAAGAAATTA 2 11 1 GGTGGTGAAAGATGTGGGAAAGAGAGAGA 3 5 1 AAAAAGAGCTTACAGGAACTTGAAAAGCTATTGG 3 63 1 TAATAAACTATCAAGGAGGTGCTAAA 4 170 1 GCCAAACAGATAAAGGAAATGGAAATAGGCCAGG 5 77 1 ATGGCTGAAATGAAGAAGGTTGAAGAAATTGAAA 6 13 1 AGGCCTGCTCTTAAGGAACATCAAGGCGAGCTCA 6 64 1 ACCTTTCCTTTGAAGGAGGTTGCTCCAGCTGTCC 6 128 1 GTCAAGTGGGTTAAGAAAGTAGAAATAACTCAGC 6 214 1 CAAAGAGCAGTAAAAGAATTGCTACTAAAATTCT 8 248 1 * ***** *** * MAP Score: 14.2398 Motif 4 TTAGAAAAAAGAGCTTACAGGAACTTGAAAAGCTATT 3 58 1 AAAAGCTATTGGACGAACTTAAACTTGAATTGACAAG 3 85 1 CATGGGGTTCTCAAGACCCTGAACTTGTTTTTTAAAC 3 128 0 AAGTGTGCCCGGCGGGACTTGAACCCGCGACCCCGGG 4 24 1 ACCCGCGACCCCGGGGTCCGGAGCCCCGTGCTCTGTC 4 46 1 GCCCCGTGCTCTGTCCACCTGAGCTACGGGCACTATT 4 68 1 AAAGGTTCCCGTAACGTCGTGAACTACGTCAGCCTTT 5 16 0 TTTGGCGGTTTCCGCAACCGGAACGGGGCAAAAGGTT 5 46 0 TGGAAATAGGCCAGGTTCTGGAACTGATAGCGG 5 96 1 TCCTTAATATCTACGAGCTTGAGCTCGCCTTGATGTT 6 80 0 TGTCTACAACCGGACAGCTGGAGCAACCTCCTTCAAA 6 136 0 TTGGAATTTTTAGACCGCAGGAGGTGCCCTTGCGTCT 8 12 1 GTATCGGGGCGGCCGGACTTGAACCGGCGACCTTCGG 9 10 1 AGCGTCGGCTTTGGGAGCCGAAGGTCGCCGGTTCAAG 9 27 0 AAGCCGACGCTCTACCACCTGAGCTACGCCCCGTCCC 9 53 1 * * * ****** * MAP Score: 7.74684 Motif 5 TAAGGATTAAGGACAAATCTCAGAGGGACGGATATA 1 30 1 AGAAGAAATCCTCAAGAAAATTGAAGA 2 1 1 GAAAATTGAAGAAGAAATTATGCAGGCTGCAAAGGA 2 25 1 GAAGTTCTTAGAAGATATTAGAAAAAAGAGCTTACA 3 41 1 TGAGAACCCCATGGAAATGAGGAAGGTAAAGAGGAA 3 152 1 GATAAAGGAAATGGAAATAGGCCAGGTTCTGGAACT 5 85 1 AGTATGGCTGAAATGAAGAAGGTTGAAGAAAT 6 6 1 GAAGAAGGTTGAAGAAATTGAAAAAGTGCTCGAAAA 6 24 1 GCTCAAGCTCGTAGATATTAAGGAAGACACCGTTTA 6 93 1 GGTTAAGAAAGTAGAAATAACTCAGCAGAAATTCGA 6 222 1 * ****** *** MAP Score: 7.51528 Motif 6 AAATGGGATTTAAAGGAGCTTGGAACAAGAGAAA 0 21 1 AAAAAGAGCTTACAGGAACTTGAAAAGCTATTGG 3 63 1 TTGACGGTTATAAGGGAAAAACAGTTGAGAGGTG 3 201 1 CCACCTGAGCTACGGGCACTATTATAAATAAATT 4 82 1 TTCACGACGTTACGGGAACCTTTTGCCCCGTTCC 5 30 1 CCGTTCCGGTTGCGGAAACCGCCAAACAGATAAA 5 57 1 GCCAAACAGATAAAGGAAATGGAAATAGGCCAGG 5 77 1 ATAGGCCAGGTTCTGGAACTGATAGCGG 5 101 1 AGGCCTGCTCTTAAGGAACATCAAGGCGAGCTCA 6 64 1 CAACCTCCTTCAAAGGAAAGGTAAACGGTGTCTT 6 116 0 ATACAGTAATTAAGGGAAACGTCAAGTGGGTTAA 6 194 1 TATAAAGACGCAAGGGCACCTCCTGCGGTCTAAA 8 20 0 ATCTGATTACTACGGGGACGGTGAAATTAAAAGC 8 53 1 CTATGAAAAATACGGGAAAATTAACCCTCTTTGG 8 98 1 TAAACATAACGACGGGAAAGTACACCCGAACTGC 8 186 0 ********* * MAP Score: 7.2333 Motif 7 CTACAAAAAACTCCAGAGGGCTTACAAGCTC 0 91 1 TGATAAGTGTGCCCGGCGGGACTTGAACCCGC 4 20 1 GCGGGACTTGAACCCGCGACCCCGGGGTCCGG 4 35 1 CGACCCCGGGGTCCGGAGCCCCGTGCTCTGTC 4 51 1 GTGCTCTGTCCACCTGAGCTACGGGCACTATT 4 73 1 AAGGAGGTTGCTCCAGCTGTCCGGTTGTAGAC 6 140 1 GCAAGGGCACCTCCTGCGGTCTAAAAATTCCA 8 13 0 GCCGGTTCAAGTCCGGCCGCCCCGATAC 9 6 0 GCCGGACTTGAACCGGCGACCTTCGGCTCCCA 9 21 1 CGGCTCCCAAAGCCGACGCTCTACCACCTGAG 9 44 1 GACGCTCTACCACCTGAGCTACGCCCCGTCCC 9 58 1 * ** ******* MAP Score: 6.37563 Motif 8 TAAGGATTAAGGACAAATCTCAGAGGGACGGATAT 1 30 1 AGAAGAAATCCTCAAGAAAATTGAAG 2 1 1 GAAAATTGAAGAAGAAATTATGCAGGCTGCAAAGG 2 25 1 GGTGGTGAAAGATGTGGGAAAGAGAGAG 3 3 1 GAAGTTCTTAGAAGATATTAGAAAAAAGAGCTTAC 3 41 1 AGTATGGCTGAAATGAAGAAGGTTGAAGAAA 6 6 1 GAAGAAGGTTGAAGAAATTGAAAAAGTGCTCGAAA 6 24 1 GCTCAAGCTCGTAGATATTAAGGAAGACACCGTTT 6 93 1 GGTTAAGAAAGTAGAAATAACTCAGCAGAAATTCG 6 222 1 AAATAACTCAGCAGAAATTCGACATACAGCAATTC 6 236 1 ACTCGAAGTCGGAGAAAGAGTAAAATCTTTTCT 7 14 1 CTACGGGGACGGTGAAATTAAAAGCTTTTCTGGAA 8 62 1 AACCCTCTTTGGAGATATTTCTGGCTTTTCGTAAT 8 120 1 * ****** *** MAP Score: 5.75847 Motif 9 ACAAGAGAAACAGACTCATCGAGAACCCTGAGGAGTATTA 0 45 1 ATAAGTGTGCCCGGCGGGACTTGAACCCGCGACCCCGGGG 4 22 1 GAACCCGCGACCCCGGGGTCCGGAGCCCCGTGCTCTGTCC 4 44 1 GAGCCCCGTGCTCTGTCCACCTGAGCTACGGGCACTATTA 4 66 1 ACTTTGATTTCAGTCATAACGTAAACCTTGCAAATGAATG 4 116 1 CAAAAGGTTCCCGTAACGTCGTGAACTACGTCAGCCTTTA 5 15 0 CGGTTGTAGACATATCCCTCAAAAACCTCGTTGATACAGT 6 161 1 GTATCGGGGCGGCCGGACTTGAACCGGCGACCTTCGGC 9 8 1 AACCGGCGACCTTCGGCTCCCAAAGCCGACGCTCTACCAC 9 31 1 CAAAGCCGACGCTCTACCACCTGAGCTACGCCCCGTCCCG 9 51 1 * * * ****** * MAP Score: 4.33842 Motif 10 AGGACAAATCTCAGAGGGACGGATATAAACCT 1 39 1 CAATAGCCATACTCAGGTACGCCCACATATTC 1 78 1 ATAAGTGTGCCCGGCGGGACTTGAACCCGCGA 4 22 1 AACCCGCGACCCCGGGGTCCGGAGCCCCGTGC 4 45 1 GCTCTGTCCACCTGAGCTACGGGCACTATTAT 4 75 1 GGAGGTTGCTCCAGCTGTCCGGTTGTAGACAT 6 142 1 TATCTGATTACTACGGGGACGGTGAAATTAAA 8 52 1 CGCTCTACCACCTGAGCTACGCCCCGTCCCGA 9 60 1 ** * ******* MAP Score: 3.04707 Motif 11 TAAGTGTGCCCGGCGGGACTTGAACCCGCGACCCCGGGGT 4 23 1 ACCCGCGACCCCGGGGTCCGGAGCCCCGTGCTCTGTCCAC 4 46 1 AATTTTTAGACCGCAGGAGGTGCCCTTGCGTCTTTATATC 8 16 1 GTATCGGGGCGGCCGGACTTGAACCGGCGACCTTCGGCT 9 9 1 GCTCCCAAAGCCGACGCTCTACCACCTGAGCTACGCCCCG 9 46 1 *** * * *** * * MAP Score: 2.86276 Motif 12 ATAAGTGTGCCCGGCGGGACTTGAACCCGCGACCCCGGGGTCC 4 22 1 GAACCCGCGACCCCGGGGTCCGGAGCCCCGTGCTCTGTCCACC 4 44 1 CGTGCTCTGTCCACCTGAGCTACGGGCACTATTATAAATAAAT 4 72 1 GTTCACGACGTTACGGGAACCTTTTGCCCCGTTCCGGTTGCGG 5 29 1 CCGCTATCAGTTCCAGAACCTGGCCTATTTCCATTT 5 93 0 GTATCGGGGCGGCCGGACTTGAACCGGCGACCTTCGGCTCC 9 8 1 GAACCGGCGACCTTCGGCTCCCAAAGCCGACGCTCTACCACCT 9 30 1 CGACGCTCTACCACCTGAGCTACGCCCCGTCCCGAATAAAATA 9 57 1 ** * * ** ** * * MAP Score: 2.79177 Motif 13 ACAGACTCATCGAGAACCCTGAGGAGTATTA 0 54 1 GTTTTTTAAACCTGAGTCTTGTCAATTCAAG 3 108 0 GGACTTGAACCCGCGACCCCGGGGTCCGGAG 4 38 1 ACCCCGGGGTCCGGAGCCCCGTGCTCTGTCC 4 53 1 GCTCTGTCCACCTGAGCTACGGGCACTATTA 4 75 1 CCCGTAACGTCGTGAACTACGTCAGCCTTTA 5 15 0 CACGACGTTACGGGAACCTTTTGCCCCGTTC 5 32 1 GTTTCCGCAACCGGAACGGGGCAAAAGGTTC 5 45 0 GTTCCGGTTGCGGAAACCGCCAAACAGATAA 5 59 1 GCTATCAGTTCCAGAACCTGGCCTATTTCCA 5 96 0 CTGATTACTACGGGGACGGTGAAATTAAAAG 8 55 1 GGAAAGTACACCCGAACTGCCACGTATGTAT 8 175 0 GGTTCAAGTCCGGCCGCCCCGATAC 9 4 0 CGCTCTACCACCTGAGCTACGCCCCGTCCCG 9 60 1 AATATTTTATTCGGGACGGGGCGTAGCTCAG 9 71 0 ******** ** MAP Score: 2.68984 Motif 14 TCTCAGAGGGACGGATATAAACCTAATCAATCAAT 1 47 1 AGAAATCCTCAAGAAAATTGAAGAAGAAATTATGC 2 13 1 AAGTTCTTAGAAGATATTAGAAAAAAGAGCTTACA 3 42 1 AAAGAGCTTACAGGAACTTGAAAAGCTATTGGACG 3 65 1 CATGGAAATGAGGAAGGTAAAGAGGAACATAGCTA 3 161 1 GTGTGCCCGGCGGGACTTGAACCCGCGACCCCGGG 4 26 1 CAAACAGATAAAGGAAATGGAAATAGGCCAGGTTC 5 79 1 GGAAATAGGCCAGGTTCTGGAACTGATAGCGG 5 97 1 GGCTGAAATGAAGAAGGTTGAAGAAATTGAAAAAG 6 15 1 CTCCAGCTGTCCGGTTGTAGACATATCCCTCAAAA 6 150 1 CAAGTGGGTTAAGAAAGTAGAAATAACTCAGCAGA 6 216 1 AATAACTCAGCAGAAATTCGACATACAGCAATTCG 6 237 1 ATCGGGGCGGCCGGACTTGAACCGGCGACCTTCGG 9 12 1 * *** * **** * MAP Score: 1.75651 Motif 15 ATGGGATTTAAAGGAGCTTGGAACAAGAGAA 0 23 1 CAGACTCATCGAGAACCCTGAGGAGTATTAC 0 55 1 AAAGAGCTTACAGGAACTTGAAAAGCTATTG 3 65 1 AAAGCTATTGGACGAACTTAAACTTGAATTG 3 86 1 AAAACAAGTTCAGGGTCTTGAGAACCCCATG 3 134 1 CTCAGCACCTTGATAAGTGTGCC 4 2 1 AGTGTGCCCGGCGGGACTTGAACCCGCGACC 4 25 1 GCACGGGGCTCCGGACCCCGGGGTCGCGGGT 4 46 0 TTGGCGGTTTCCGCAACCGGAACGGGGCAAA 5 51 0 GGAAATAGGCCAGGTTCTGGAACTGATAGCG 5 97 1 TATCGGGGCGGCCGGACTTGAACCGGCGACC 9 11 1 CTGAGCTACGCCCCGTCCCGAATAAAATATT 9 71 1 ***** ***** MAP Score: 1.07394 Motif 16 GAGTAAATGGGATTTAAAGGAGCTTGGAACAAGAGAAAC 0 17 1 AATTGAAGAAGAAATTATGCAGGCTGCAAAGGAGGGCTA 2 28 1 GGTGGTGAAAGATGTGGGAAAGAGAGAGAA 3 1 1 AAATTACTTTGATTTCAGTCATAACGTAAACCTTGCAAA 4 111 1 CATAAAGGCTGACGTAGTTCACGACGTTACGGGAACCTT 5 13 1 AACCGCCAAACAGATAAAGGAAATGGAAATAGGCCAGGT 5 73 1 TGAAATGAAGAAGGTTGAAGAAATTGAAAAAGTGCTCGA 6 18 1 ATCCCTCAAAAACCTCGTTGATACAGTAATTAAGGGAAA 6 174 1 TAACTCAGCAGAAATTCGACATACAGCAATTCGCTTA 6 239 1 AATTACTCGAAGTCGGAGAAAGAGTAAAATCTTTTCT 7 8 1 ** * * ** * * ** MAP Score: 1.05788 Motif 17 AGTGTGCCCGGCGGGACTTGAACCCGCGACCCCGGGGT 4 25 1 ACCCGCGACCCCGGGGTCCGGAGCCCCGTGCTCTGTCC 4 46 1 CACGACGTTACGGGAACCTTTTGCCCCGTTCCGGTTGC 5 32 1 TTGCCCCGTTCCGGTTGCGGAAACCGCCAAACAGATAA 5 52 1 AATTTTTAGACCGCAGGAGGTGCCCTTGCGTCTTTATA 8 16 1 ATGAAAAATACGGGAAAATTAACCCTCTTTGGAGATAT 8 100 1 CGTGGCAGTTCGGGTGTACTTTCCCGTCGTTATGTTTA 8 182 1 CCGAAGGTCGCCGGTTCAAGTCCGGCCGCCCCGATAC 9 9 0 CGGCGACCTTCGGCTCCCAAAGCCGACGCTCTACCACC 9 34 1 **** * *** ** MAP Score: 0.482532 Motif 18 AACAAGTTCAGGGTCTTGAGAACCCCATGGAAATGAG 3 136 1 GTGTGCCCGGCGGGACTTGAACCCGCGACCCCGGGGT 4 26 1 CCCGCGACCCCGGGGTCCGGAGCCCCGTGCTCTGTCC 4 47 1 CACGACGTTACGGGAACCTTTTGCCCCGTTCCGGTTG 5 32 1 TGCCCCGTTCCGGTTGCGGAAACCGCCAAACAGATAA 5 53 1 ATGAAAAATACGGGAAAATTAACCCTCTTTGGAGATA 8 100 1 GTGGCAGTTCGGGTGTACTTTCCCGTCGTTATGTTTA 8 183 1 CGGCGACCTTCGGCTCCCAAAGCCGACGCTCTACCAC 9 34 1 **** * ***** MAP Score: 0.0647318