AlignACE 3.0 10/20/99
AlignACE2 -i AA/AA_fusions010_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944234544
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	aq_1328	60	hypothetical protein
#1	aq_1625	300	hypothetical protein
#2	aq_1691	32	hypothetical protein
#3	dplF	68	N-terminus of phage SPO1 DNA polymerase

Motif 1
AAAAAGAGGGGAAGGAAAAGATTA          	1	0	0
GAACAGGGGAGACGGAATAGCGGATGTTGTCAAG	1	154	1
TGTCAAGTGTGACATAAAAGACGAGGAAGATCAC	1	181	1
GATAGTCCCGGAAGGACTGGAAGACGAAGTCAGA	1	223	1
CGAAGTCAGAGAAGTAGAAGAAGAGTGCCCCAGC	1	247	1
TATTATCGTTGAAGAACTCGAAGA          	1	286	1
   TGGGACTGAAGGAAACGATAAAAGCCCTGGA	3	7	1
          **** * * ** **
MAP Score: 13.0907

Motif 2
GCCGTACAGGTTTCCTGGTCAACCATGGTC	1	85	0
CAGCAGTGATCTTCCTCGTCTTTTATGTCA	1	190	0
AGGAAGAGAGTTTCCATGTCAGGGTTAATA	0	30	1
TGGAAACTCTCTTCCTTTTGTCTATAATTT	0	16	0
ACTTCTCTGACTTCGTCTTCCAGTCCTTCC	1	232	0
TCTTCCAGTCCTTCCGGGACTATCATCCAG	1	217	0
         TCTTCGAGTTCTTCAACGATA	1	289	0
ATCCCTATGCTTTCCAGGGCTTTTATCGTT	3	23	0
    TAATCTTTTCCTTCCCCTCTTTTTCA	1	6	1
ATAAATCTTTTTTCTTTTTCAAAGGAGGTC	1	35	1
          TTTCCTGTTTAAGTATATTT	3	58	0
GGGCACTCTTCTTCTACTTCTCTGACTTCG	1	247	0
AACATCCGCTATTCCGTCTCCCCTGTTCTT	1	152	0
GCTTTTATCGTTTCCTTCAGTCCCA     	3	5	0
TTTAAGTATATTTCCGTTATCCCTATGCTT	3	41	0
          **********
MAP Score: 12.9673

Motif 3
   GCATATAAATTATAGACAAAAGGAAGAGAGTTTCCATG	0	7	1
AAGAAAAAAGATTTATGAAAAAGAGGGGAAGGAAAAGATTA	1	10	0
GGTCTGAGCCATGGCAAAATTAAAGACCATGGTTGACCAGG	1	61	1
GCTTGCGAGCTGTGTTACGATAGAGTTCCCGAGGTTTACAA	1	113	1
TACAAGAACAGGGGAGACGGAATAGCGGATGTTGTCAAGTG	1	149	1
GATGTTGTCAAGTGTGACATAAAAGACGAGGAAGATCACTG	1	176	1
GAGGAAGATCACTGCTGGATGATAGTCCCGGAAGGACTGGA	1	203	1
GAAGGACTGGAAGACGAAGTCAGAGAAGTAGAAGAAGAGTG	1	233	1
GAGTTCTTCAACGATAATAGAACCGCTGGGGCACTCTTCTT	1	264	0
  TGGGACTGAAGGAAACGATAAAAGCCCTGGAAAGCATAG	3	8	1
          * **  * *  * **  *  *
MAP Score: 5.42842

Motif 4
ACATGGAAACTCTCTTCCTTTTGTCTATAAT	0	18	0
TCTAAATTAATATTAACCCTGACATGGAAAC	0	39	0
       TAATCTTTTCCTTCCCCTCTTTTT	1	3	1
TTTTGCCATGGCTCAGACCTCCTTTGAAAAA	1	49	0
CAGGTTTCCTGGTCAACCATGGTCTTTAATT	1	78	0
TCCGCTATTCCGTCTCCCCTGTTCTTGTAAA	1	147	0
TCGTCTTTTATGTCACACTTGACAACATCCG	1	174	0
ATCCAGCAGTGATCTTCCTCGTCTTTTATGT	1	192	0
TTCTTCTACTTCTCTGACTTCGTCTTCCAGT	1	238	0
AGGGCTTTTATCGTTTCCTTCAGTCCCA   	3	7	0
          ***** *****
MAP Score: 0.505977

Motif 5
TCCTTTGAAAAAGAAAAAAGATTTATGAAA	1	31	0
CCCGAGGTTTACAAGAACAGGGGAGACGGA	1	140	1
GGACTGGAAGACGAAGTCAGAGAAGTAGAA	1	236	1
GAGTTCTTCAACGATAATAGAACCGCTGGG	1	275	0
ACTGAAGGAAACGATAAAAGCCCTGGAAAG	3	14	1
ACGGAAATATACTTAAACAGGAAA      	3	54	1
          **********
MAP Score: 0.205957