AlignACE 3.0 10/20/99
AlignACE2 -i AA/AA_fusions013_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944234581
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	frdB1	35	fumarate reductase iron-sulfur subunit
#1	frdB2	39	fumarate reductase iron-sulfur subunit
#2	leuS'	300	leucyl-tRNA synthetase beta subunit

Motif 1
AGTCTGGGGGATAAATTTTTCAAACGGAATT 	0	9	0
TTCTAAAGCTATAAAATTTTGAGT        	1	25	1
TCGGGTCAATATAAAATTTTTAATT       	2	285	1
GTATACCTTTATAAAATTTCCATCCTTGATTT	2	105	1
TTTTACTTTAGTAAACTTTTAATTGGAGGGCT	2	250	0
AATCTGGATAATAAATTCTAAAGCTATAAAAT	1	10	1
TAGGTGTCTAATAAGTTATTGATAAAGCGTTA	2	20	0
          ***** **** *
MAP Score: 10.6614

Motif 2
 AATTCCGTTTGAAAAATTTATCCCCCAGA	0	9	1
  AATCTGGATAATAAATTCTAAAGCTATA	1	8	1
ATTCTAAAGCTATAAAATTTTGAGT     	1	24	1
GTTAGGTGTCTAATAAGTTATTGATAAAGC	2	24	0
AGTATACCTTTATAAAATTTCCATCCTTGA	2	104	1
GCAACATAGCTAAAAAGATTGAAAATCAAG	2	129	0
AGCCCTCCAATTAAAAGTTTACTAAAGTAA	2	250	1
TTTACTAAAGTAAAAACTTCGGGTCAATAT	2	267	1
TTCGGGTCAATATAAAATTTTTAATT    	2	284	1
          **********
MAP Score: 10.2522