AlignACE 3.0 10/20/99
AlignACE2 -i AA/AA_fusions014_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944234590
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	pstB	149	phosphate transport ATP binding protein
#1	abcT3	206	ABC transporter (ABC-2 subfamily)
#2	cysM	41	cysteine synthase, O-acetylserine (thiol) lyase B
#3	aq_1558	27	putative protein
#4	hemN	300	oxygen-independent coproporphyrinogen II

Motif 1
GCTGTGGATTTAATCAACTCTATAGTGTTTGTA	1	82	1
TTTTTTCTGGTTTTCAAGTCTTTGAAGCTCAGT	1	118	0
ATTAAAGCAATAATAAATCCTATCCCCAGTATA	4	40	0
GGTTTATAATTTATCACTCGTATTAATAAGTGC	4	92	0
GAGTGATAAATTATAAACCGTATGATCTTTGAG	4	106	1
TACCTTGCTCTTTTCATATTTATTGTAGTATTA	4	163	1
GATAATAGAGTTATCATCTATTTTTACTTCTTT	4	243	0
AATATTAAGTTTTTCACCTATATTATTCTCATA	4	277	1
          ******  * ***
MAP Score: 6.63414

Motif 2
CCTTTGCAGAATATATTATACTTCAAATTT	0	10	0
AGCCATGTTGATTTATTATAA         	1	1	0
TGGGGATAGGATTTATTATTGCTTTAATAA	4	45	1
CAAAAAAGATACTTATTAAAGCAATAATAA	4	57	0
TTGGTGTTGCACTTATTAATACGAGTGATA	4	84	1
AATACGAGTGATAAATTATAAACCGTATGA	4	101	1
AAAAGGCATTACTAATTGTATACCTTGCTC	4	143	1
CTCTTTTCATATTTATTGTAGTATTAGGTG	4	170	1
TAGGTGAAAAACTTAATATTGGATAATAGA	4	267	0
          **********
MAP Score: 6.375

Motif 3
TAAATATAGACGGAAAGGAGTACGACACCGA	1	35	1
GAGTACGACACCGAAAAGCTTCCGAAAGAAG	1	52	1
CGAAAAGCTTCCGAAAGAAGCTGTGGATTTA	1	63	1
ACTTGAAAACCAGAAAAAAGTCTTAACGGCT	1	132	1
GTCTTAACGGCTGCAAGAATTTTCTATGCTG	1	151	1
ATTTTCTATGCTGAAAAACTAAAGGAAGTGC	1	169	1
TACAATAAATATGAAAAGAGCAAGGTATACA	4	159	0
TAAAAGCCTCAGGAAAGAAGTAAAAATAGAT	4	230	1
AATAATATAGGTGAAAAACTTAATATTGGAT	4	273	0
          * *********
MAP Score: 4.97814

Motif 4
AAATTCCTGTAAAATTTCTAAATGGT         	0	133	1
      TTATAATAAATCAACATGGCTAAGGTAAA	1	4	1
TGTGGATTTAATCAACTCTATAGTGTTTGTAGATA	1	84	1
GAAAACCAGAAAAAAGTCTTAACGGCTGCAAGAAT	1	136	1
TTCTATGCTGAAAAACTAAAGGAAGTGCTGAGTAA	1	172	1
AATACGAGTGATAAATTATAAACCGTATGATCTTT	4	101	1
CTAATACTACAATAAATATGAAAAGAGCAAGGTAT	4	162	0
AGCCTCAGGAAAGAAGTAAAAATAGATGATAACTC	4	234	1
AATATAGGTGAAAAACTTAATATTGGATAATAGAG	4	266	0
          ** ** **** *  *
MAP Score: 4.97397

Motif 5
ATTTGAAGTATAATATATTCTGCAAAGGCGCGTAGC	0	12	1
TAGCGCTTAATAAAAATTCCTGTAAAATTTCTAAAT	0	120	1
TGGCTAAGGTAAATATAGACGGAAAGGAGTACGACA	1	26	1
GTACGACACCGAAAAGCTTCCGAAAGAAGCTGTGGA	1	54	1
TCAAAGACTTGAAAACCAGAAAAAAGTCTTAACGGC	1	126	1
TTTCTATGCTGAAAAACTAAAGGAAGTGCTGAGTAA	1	171	1
TTGCACTTATTAATACGAGTGATAAATTATAAACCG	4	90	1
CTTTGAGGGTGAAAAGGCATTACTAATTGTATACCT	4	132	1
AATAAACAATTAAAAGCCTCAGGAAAGAAGTAAAAA	4	220	1
AGGAAAGAAGTAAAAATAGATGATAACTCTATTATC	4	240	1
GTGAAAAACTTAATATTGGATAATAGAGTTATCATC	4	258	0
  TATGAGAATAATATAGGTGAAAAACTTAATATTG	4	276	0
          *****    * * ***
MAP Score: 3.85139

Motif 6
TTTATTAAGCGCTAATTAAGATGGTAGGCGCGG	0	101	0
  ACCATTTAGAAATTTTACAGGAATTTTTATT	0	128	0
     TTATAATAAATCAACATGGCTAAGGTAA	1	5	1
CATGGCTAAGGTAAATATAGACGGAAAGGAGTA	1	24	1
AACGGCTGCAAGAATTTTCTATGCTGAAAAACT	1	156	1
TTTCTATGCTGAAAAACTAAAGGAAGTGCTGAG	1	171	1
GGAAGTGCTGAGTAAATTAGAAGA         	1	192	1
GCGGTATGATACTATTTTAAAGGTCTCGGAGGT	2	15	0
TCTTGCAAATAAACAATTAAAAGCCTCAGGAAA	4	213	1
CAGGAAAGAAGTAAAAATAGATGATAACTCTAT	4	239	1
      TATGAGAATAATATAGGTGAAAAACTT	4	283	0
          * ******* * *
MAP Score: 1.94512