AlignACE 3.0 10/20/99
AlignACE2 -i AA/AA_fusions016_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944234642
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	aspC3	31	aminotransferase (AspC family)
#1	metG	293	methionyl-tRNA synthetase alpha subunit

Motif 1
  AAGTAATTATTCTATATCTAGAATAGTTT	0	8	1
AGATCAAATAAATTTTTGTCTATAACTATTC	1	32	1
CTTCATAAGTATTTTTGCCCTTTTCCCCTCC	1	100	1
GAATTACAGGATTTTCTTCGTTTTCGTATCC	1	156	1
AGAATAAGAAATTCTTTTCCTTCTTTTAAGC	1	188	1
GCCCTCTACCATTTTCTACCTCCTTTCGTGA	1	217	1
ACAATCTCAAAATCTTTGTGTCAAGTCCAAA	1	257	1
          ******* ***
MAP Score: 6.5175

Motif 2
      AAGTAATTATTCTATATCTAGAATAGTTTTT      	0	4	1
       AAAAACTATTCTAGATATAGAATAATTACTT     	0	5	0
AAGGAGATCAAATAAATTTTTGTCTATAACTATTCTTGTATTG	1	28	1
TTTTGTCTATAACTATTCTTGTATTGTCAACTTTCAGAAGGTA	1	45	1
CGTTCTTCATAAGTATTTTTGCCCTTTTCCCCTCCTTCAGTCC	1	96	1
GACTTGACACAAAGATTTTGAGATTGTATCTTTATTTCACGAA	1	241	0
          **  *****     * *     *
MAP Score: 4.06629

Motif 3
        AAGTAATTATTCTATATCTAGAA	0	2	1
         AAAAACTATTCTAGATATAGAA	0	19	0
TTATAGACAAAAATTTATTTGATCTCCTTAA	1	26	0
ATTTTTGTCTATAACTATTCTTGTATTGTCA	1	43	1
TCCGTTCTTCATAAGTATTTTTGCCCTTTTC	1	94	1
CCGAGAATAAGAAATTCTTTTCCTTCTTTTA	1	185	1
GATACAATCTCAAAATCTTTGTGTCAAGTCC	1	254	1
          **** ******
MAP Score: 3.88507

Motif 4
      TCAGTGAGCCTCCTTCTTAAGGAGAT	1	4	1
AAGGTAAACCCTTCCGTTCTTCATAAGTATTT	1	82	1
CATAAGTATTTTTGCCCTTTTCCCCTCCTTCA	1	103	1
TAAGAAATTCTTTTCCTTCTTTTAAGCCCTCT	1	192	1
TTTTAAGCCCTCTACCATTTTCTACCTCCTTT	1	211	1
TCTACCATTTTCTACCTCCTTTCGTGAAATAA	1	221	1
          * * ********
MAP Score: 2.87757

Motif 5
         AAGTAATTATTCTATATCTAGAAT	0	1	1
AGGAGATCAAATAAATTTTTGTCTATAACTATT	1	29	1
TTTTGTCTATAACTATTCTTGTATTGTCAACTT	1	45	1
CGTTCTTCATAAGTATTTTTGCCCTTTTCCCCT	1	96	1
TCCGAGAATAAGAAATTCTTTTCCTTCTTTTAA	1	184	1
TACAATCTCAAAATCTTTGTGTCAAGTCCAAAG	1	256	1
CAAGTCCAAAGAGCATTATTGTAAA        	1	278	1
          **  *** *****
MAP Score: 1.44942

Motif 6
CAGAAGGTAAACCCTTCCGTTCTTCATAAG	1	79	1
TTTGCCCTTTTCCCCTCCTTCAGTCCCATG	1	113	1
ATTACAGGATTTTCTTCGTTTTCGTATCCG	1	158	1
AATAAGAAATTCTTTTCCTTCTTTTAAGCC	1	190	1
ATTTTCTACCTCCTTTCGTGAAATAAAGAT	1	227	1
          **********
MAP Score: 0.857623

Motif 7
AGGTAAACCCTTCCGTTCTTCATAAGTATTTT	1	83	1
TTTGCCCTTTTCCCCTCCTTCAGTCCCATGGA	1	113	1
ACGAAGAAAATCCTGTAATTCAAAAGCTCAGG	1	145	0
AGAAATTCTTTTCCTTCTTTTAAGCCCTCTAC	1	194	1
ATTTTCTACCTCCTTTCGTGAAATAAAGATAC	1	227	1
          **** ** ****
MAP Score: 0.359593