AlignACE 3.0 10/20/99
AlignACE2 -i AA/AA_fusions016_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944234647
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	aspC3	31	aminotransferase (AspC family)
#1	metG	293	methionyl-tRNA synthetase alpha subunit

Motif 1
        AAAAACTATTCTAGATATAGAA	0	19	0
TTTTTGTCTATAACTATTCTTGTATTGTCA	1	44	1
       AAGTAATTATTCTATATCTAGAA	0	3	1
CCGTTCTTCATAAGTATTTTTGCCCTTTTC	1	95	1
CGAGAATAAGAAATTCTTTTCCTTCTTTTA	1	186	1
GAGATCAAATAAATTTTTGTCTATAACTAT	1	31	1
TACAATCTCAAAATCTTTGTGTCAAGTCCA	1	256	1
          **********
MAP Score: 4.48697

Motif 2
     AAGTAATTATTCTATATCTAGAATAGTTT	0	5	1
GATCAAATAAATTTTTGTCTATAACTATTCTTGT	1	33	1
CTATTCTTGTATTGTCAACTTTCAGAAGGTAAAC	1	57	1
CTTCATAAGTATTTTTGCCCTTTTCCCCTCCTTC	1	100	1
GAATTACAGGATTTTCTTCGTTTTCGTATCCGAG	1	156	1
AGAATAAGAAATTCTTTTCCTTCTTTTAAGCCCT	1	188	1
GCCCTCTACCATTTTCTACCTCCTTTCGTGAAAT	1	217	1
          *** **  * ****
MAP Score: 4.35691

Motif 3
TCTGAAAGTTGACAATACAAGAATAGTTATAGACAAAA	1	45	0
AACTATTCTAGATATAGAATAATTACTT          	0	0	0
CCTTCTTAAGGAGATCAAATAAATTTTTGTCTATAACT	1	21	1
TTTCGTATCCGAGAATAAGAAATTCTTTTCCTTCTTTT	1	177	1
GAAGGAGGGGAAAAGGGCAAAAATACTTATGAAGAACG	1	96	0
CAAAGATTTTGAGATTGTATCTTTATTTCACGAAAGGA	1	237	0
CTCGGATACGAAAACGAAGAAAATCCTGTAATTCAAAA	1	152	0
AAAGGAGGTAGAAAATGGTAGAGGGCTTAAAAGAAGGA	1	205	0
          ** *  * ** * *  **
MAP Score: 2.02643