AlignACE 3.0 10/20/99 AlignACE2 -i AA/AA_operons003_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944234833 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 nsd 277 nucleotide sugar dehydrogenase #1 rodA 168 rod shape determining protein RodA #2 aq_027 72 hypothetical protein #3 aq_028 46 putative protein #4 aq_134 201 putative protein #5 rfaD 300 ADP-L-glycero-D-manno-heptose-6-epimerase #6 aq_512 300 hypothetical protein #7 mtfB 300 mannosyltransferase B #8 spsK 63 spore coat polysaccharide biosynthesis protein SpsK #9 stpK 30 ser/thr protein kinase #10 aq_601 300 putative protein #11 aq_603 211 putative protein #12 lpxA 33 acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine acyltransferase #13 glgP 110 glycogen phosphorylase #14 rfbD 89 GDP-D-mannose dehydratase #15 abcT3 206 ABC transporter (ABC-2 subfamily) #16 mtfA 263 mannosyltransferase A #17 nse 59 nucleotide sugar epimerase #18 bcsA 202 cellulose synthase catalytic subunit #19 cap 43 capsular polysaccharide biosynthsis protein #20 metE 44 tetrahydropteroyltriglutamate methyltransferase #21 degT 24 transcriptional regulator (DegT/DnrJ/Eryc1 family) #22 dmt 27 dolichol-phosphate mannosyltransferase #23 rfaG 300 glucosyl transferase I Motif 1 TCCTTCTTCTTCAACTACCGGG 19 31 0 CTTACCTCGTCTCCTTCTTCCACGTATTCG 1 140 0 AAACAAATAGCTTCTTTTTCTTTAGCTCC 6 281 1 TTCTGAGCTTCTTCCTTTTCGAAGAGTTCG 23 100 0 TTTTTAATCTCTTCCTCTTTAAAGAGTTCC 11 58 0 TCGGAATACTCTTCCTCTTTGAATTCCTCA 5 176 1 TATAATCGGACTCCTTCTCCTGTTCTTTGA 4 117 0 AACTTCTTTTTTCTCCTCTTCA 14 2 1 TCTGGGATTTCTTCCCTTTCTTGCACTCCT 23 161 0 GAAAGTTTTTCTCCCTTTTTCACTTCTCCG 5 116 1 GAGTAGATTATTTCTTCTTCTAAATCAAGA 16 225 0 GGATTTCTCCTCCTTTTAGAACTTCT 20 28 0 GCTGCGTCAGCTCCTTCTTGGTTATGCCTG 23 43 0 GGGGTATCGTCTTCCTTTCCTTTTTAATCT 11 78 0 TTAAGACGATTTCCTTTTTCATTATTATTC 0 17 0 TTGGTTATGCCTGCTTTTTCTGCAATTTTG 23 26 0 TCAATTTCCTTCTTTTTGGAAGCCACCT 10 282 0 TTTTTTTCCGCTTCCCTTTTTTCTTCCTCC 18 119 0 CATACACCACTTTCTCCTTCCAC 7 3 0 CTATGGATGATTTCTCCTTCAGGGACGAGG 18 31 1 TTTTCCCGCTTTTCTTCTTTTCTAAAATTT 23 273 1 CTTTCCCCTATTTCCTCTTTAGTCGTTAAG 1 87 1 TTTTTTCTTCCTCCTCCTCTTGAACTATGT 18 103 0 TCCTTTTAAACTGCTTTTTTTCCGCTTCCC 18 133 0 CAACGAAGTTGTCCCTCTTTATGTATATAT 4 52 1 TCCCTGCTCCTTTAAATAGGTGT 12 20 0 TATTTTCGTGGTCCTCTTTCAGTACAACCA 5 72 1 GAAAAGCTTTTTTCTTTTCCTTTCCAAGTT 16 174 0 TAGCCTTTAACTTCTTTTCGGGAAATTCGT 1 34 0 GAAGTTCTTTTCCTTGAGCTCTT 2 59 0 TTCTTAAAAATTCCCCTTTTGTATTCCCTG 11 139 0 TGGGCAAGCTGTTCTTTTTGGTTTATAATG 16 44 1 ********** MAP Score: 40.4028 Motif 2 GAACAAGAACGAGGGAAAAATTTAAGAGCG 0 125 1 TGCTTTACCGGGGGAAAGAGTACGAATTTC 1 13 1 CGAATACGTGGAAGAAGGAGACGAGGTAAG 1 140 1 ACCCCAAGGACAGGGAAAAAGCTCTGAAAG 2 23 1 TAGAAGAGCTCAAGGAAAAGAACTTC 2 56 1 TTTTCAAAGAACAGGAGAAGGAGTCCGATT 4 114 1 AGAAGTGAAAAAGGGAGAAAAACTTTCAGA 5 113 0 AGGAATTCAAAGAGGAAGAGTATTCCGATT 5 174 0 GGAGCTAAAGAAAAAGAAGCTATTTG 6 284 0 GTGGAAGGAGAAAGTGGTGTATG 7 3 1 TGGCTTCCAAAAAGAAGGAAATTGA 10 285 1 AGATTTTGAGGAAAAAGTTAAATTTGA 11 7 1 AACTCTTTAAAGAGGAAGAGATTAAAAAGG 11 60 1 TATCCGATGAAGAGGAGAAAAAAGAAGTT 14 9 0 GACTTGAAAACCAGAAAAAAGTCTTAACGG 15 131 1 AAAAACTTGGAAAGGAAAAGAAAAAAGCTT 16 171 1 TCTTGATTTAGAAGAAGAAATAATCTACTC 16 225 1 CCTCGTCCCTGAAGGAGAAATCATCCATAG 18 31 0 ACATAGTTCAAGAGGAGGAGGAAGAAAAAA 18 103 1 AGAGGAGGAGGAAGAAAAAAGGGAAGCGGA 18 113 1 AAAAAGGGAAGCGGAAAAAAAGCAGTTTAA 18 128 1 CCCGGTAGTTGAAGAAGAAGGA 19 31 1 AGAAGTTCTAAAAGGAGGAGAAATCC 20 28 1 TAGCAAAATTGCAGAAAAAGCAGGCATAAC 23 23 1 CAGGCATAACCAAGAAGGAGCTGACGCAGC 23 43 1 AACTCTTCGAAAAGGAAGAAGCTCAGAATT 23 102 1 GAGTGCAAGAAAGGGAAGAAATCCCAGAAC 23 163 1 AAATCCCAGAACGGGAGAAGTTATACAAAT 23 181 1 AAGAAGAAAAGCGGGAAAAATTAAGAAATC 23 262 0 AAATTTTAGAAAAGAAGAAAAGCGGGAAAA 23 273 0 ********** MAP Score: 35.1874 Motif 3 CAAGGATTGAAAGGTTTAAAAAAGGCTACCCCA 0 80 1 TAGAAGAACAAGAACGAGGGAAAAATTTAAGAG 0 120 1 TTTTCTCTGAAAAGTTCGGAAAAAGCTTTCCCT 0 210 0 ACTTTTCAGAGAAAAACAAAAAAATCCTTAATA 0 228 1 GACTAAAGAGGAAATAGGGGAAAGACCGAGCTT 1 78 0 TCTACACCCCAAGGACAGGGAAAAAGCTCTGAA 2 18 1 GATTTTTTCAGGAGGTAAAAAAATC 3 2 0 AACTTCCCCTGGGACTTGGGAAACTTCCCGGTG 4 82 0 AGTTTTTCAAAGAACAGGAGAAGGAGTCCGATT 4 111 1 AGGTATGGGAGAGATAGGGAAAGTATTGATTTT 4 165 0 GTTATATTCAAGAGGTTGAAAAACTAAAGTTTT 5 25 0 CGGAGAAGTGAAAAAGGGAGAAAAACTTTCAGA 5 113 0 CATAGATAGAAAAAGCGGAGAAGTGAAAAAGGG 5 128 0 GGAGCTAAAGAAAAAGAAGCTATTTGTTT 6 281 0 ACCATCGCTCGAAGGTTGAAAAGAAGCTCTCAA 7 48 0 GGTGGCTTCCAAAAAGAAGGAAATTGA 10 283 1 AAGAGATTAAAAAGGAAAGGAAGACGATACCCC 11 75 1 CGATGAAGAGGAGAAAAAAGAAGTT 14 2 0 AATTCTTATAGAGGTAAAGGAAGATCTAGTTAG 14 47 0 CAAAGACTTGAAAACCAGAAAAAAGTCTTAACG 15 127 1 ATATTTAGTAAAAACTTGGAAAGGAAAAGAAAA 16 162 1 ACTTGGAAAGGAAAAGAAAAAAGCTTTTCCATT 16 175 1 AAGGTTAGCTAAAAAGTGGAAAATAGTAAACCA 18 71 1 CATAGTTCAAGAGGAGGAGGAAGAAAAAAGGGA 18 104 1 AGAAAAAAGGGAAGCGGAAAAAAAGCAGTTTAA 18 125 1 CTGACTATAGAGGACTTGAGAAATATCTTTAAA 18 165 1 AGAAGTTCTAAAAGGAGGAGAAATCC 20 28 1 CGAACTCTTCGAAAAGGAAGAAGCTCAGAATTC 23 100 1 AGGAGTGCAAGAAAGGGAAGAAATCCCAGAACG 23 161 1 AAGAAATCCCAGAACGGGAGAAGTTATACAAAT 23 178 1 GAAAAGCGGGAAAAATTAAGAAATCTGCTTAAC 23 254 0 AAAATTTTAGAAAAGAAGAAAAGCGGGAAAAAT 23 271 0 **** ****** MAP Score: 27.2859 Motif 4 GCCTTTTTTAAACCTTTCAATCCTTGCATT 0 76 0 GCTTTTTCCGAACTTTTCAGAGAAAAACAA 0 217 1 CTTGGGGTGTAGATTTTCAAC 2 1 0 TCCCAGGGGAAGTTTTTCAAAGAACAGGAG 4 101 1 TTAAAACTTTAGTTTTTCAACCTCTTGAAT 5 23 1 AAAGGGAGAAAAACTTTCAGAATACACTCA 5 104 0 AAAGGTGATAAGGCTTTTAACTTCTTGCTT 5 259 0 GAATAGTCAAAGGTTTTGAAGTTGGGTTCT 6 144 1 AGTCTTTTAAAAGCCAAATT 10 0 1 TTTAAAAGCCAAATTTTTAACTAATTTTTC 10 15 1 ATTTTTAACTAATTTTTCAAGGTAAATTTA 10 27 1 TTCCTTAGCAAGCTTTTGAGCTTCATCTCT 10 71 0 AGATTTTGAGGAAAAAGTTA 11 0 1 AAATTCTCCGAGGTTTTCAAATTTAACTTT 11 23 0 AACCTCGGAGAATTTTTCAAGGAACTCTTT 11 38 1 CTGTGTAAGCAGTTTTTTAAAATGAATCTT 13 24 0 CTGGTTTTCAAGTCTTTGAAGCTCAGTATC 15 115 0 CACTTCCTTTAGTTTTTCAGCATAGAAAAT 15 169 0 TTTAAGCTATAATTTTTCAATTATGGGCAA 16 21 1 TTATAATGCTAAATTTTCAAGCATATTTAG 16 66 1 TTATGTTCTTAAGCTTTGAGTAGATTATTT 16 242 0 TTTAACGGACAAGTTTTGAAGTAGAATCTT 17 35 1 TTTGAAGTAGAATCTTTGAA 17 49 1 ********** MAP Score: 23.9022 Motif 5 TCTCAGGGAAAGCTTTTTCCGAACTTTTCA 0 206 1 GGGAAATTCGTACTCTTTCCCCCGGTAAAG 1 15 0 TTTAGCCTTTAACTTCTTTTCGGGAAATTC 1 36 0 GGAAAGACCGAGCTTCTTTAAGAGCTCTTT 1 63 0 TTACCTCGTCTCCTTCTTCCACGTATTCGT 1 139 0 CGGCTTTCAGAGCTTTTTCCCTGTCCTTGG 2 26 0 TAAGGCTTTTAACTTCTTGCTTGGGCTTAT 5 251 0 TAAAACAAATAGCTTCTTTTTCTTTAGCTC 6 279 1 GCTTATTGAGAGCTTCTTTTCAACCTTCGA 7 43 1 TCAATTTCCTTCTTTTTGGAAGCCAC 10 284 0 TTTCAAATTTAACTTTTTCCTCAAAATCT 11 9 0 TCCCTGCTCCTTTAAATAGGTGTT 12 19 0 AACTTCTTTTTTCTCCTCTT 14 0 1 TTAAATCCACAGCTTCTTTCGGAAGCTTTT 15 65 0 CAGCCGTTAAGACTTTTTTCTGGTTTTCAA 15 134 0 TTAATGGAAAAGCTTTTTTCTTTTCCTTTC 16 180 0 CCTTTTAAACTGCTTTTTTTCCGCTTCCCT 18 132 0 TCCTTCTTCTTCAACTACCG 19 33 0 GGATTTCTCCTCCTTTTAGAACTTCTT 20 27 0 TAAGATAAAATACTTCTTCTA 22 16 1 TGGTTATGCCTGCTTTTTCTGCAATTTTGC 23 25 0 TAGCTGCGTCAGCTCCTTCTTGGTTATGCC 23 45 0 GGGAATTCTGAGCTTCTTCCTTTTCGAAGA 23 105 0 GTATTTGTATAACTTCTCCCGTTCTGGGAT 23 183 0 ********** MAP Score: 23.3066 Motif 6 ATGCAAGGATTGAAAGGTTTAAAAAAGGCTACCC 0 77 1 AAGAACGAGGGAAAAATTTAAGAGCGATACTTTA 0 129 1 TGTTTTTCTCTGAAAAGTTCGGAAAAAGCTTTCC 0 212 0 CTTTACCGGGGGAAAGAGTACGAATTTCCCGAAA 1 15 1 CGAATTTCCCGAAAAGAAGTTAAAGGCTAAAGAG 1 35 1 CAAGGACAGGGAAAAAGCTCTGAAAGCCGTAGAA 2 27 1 TTTTACCTCCTGAAAAAATCTAAAATTAAATTTT 3 15 1 ACCACGAAAATAAAAAGGTCAGAATTGTTATATT 5 50 0 GCGGAGAAGTGAAAAAGGGAGAAAAACTTTCAGA 5 113 0 TACATAGATAGAAAAAGCGGAGAAGTGAAAAAGG 5 129 0 CTTGAGGAATTCAAAGAGGAAGAGTATTCCGATT 5 174 0 ATGCAGTTCCTGAAAGGTGATAAGGCTTTTAACT 5 267 0 TCAAGAATAGTCAAAGGTTTTGAAGTTGGGTTCT 6 140 1 ATATTTAATCTAAGAGATGTAAAACAAATAGCTT 6 260 1 AAGTTAAATTTGAAAACCTCGGAGAATTTTTCAA 11 24 1 AAGGAACTCTTTAAAGAGGAAGAGATTAAAAAGG 11 56 1 CGATACCCCTTGAGAAGTTTGAAACCATAAGGAC 11 99 1 TATATCCGATGAAGAGGAGAAAAAAGAAGTT 14 7 0 GTACGACACCGAAAAGCTTCCGAAAGAAGCTGTG 15 54 1 ATACTGAGCTTCAAAGACTTGAAAACCAGAAAAA 15 116 1 TATATATTTAGTAAAAACTTGGAAAGGAAAAGAA 16 159 1 GCTTTTCCATTAAGAATCTTGAAGGTAATCTTGA 16 197 1 AATAATCTACTCAAAGCTTAAGAACATAAA 16 243 1 GAGGTTTAACGGACAAGTTTTGAAGTAGAATCTT 17 31 1 AAGTTTTGAAGTAGAATCTTTGAA 17 45 1 AAAGGTTAGCTAAAAAGTGGAAAATAGTAAACCA 18 70 1 TATTTTAAAATAAGAAGTTCTAAAAGGAGGAGAA 20 16 1 TGAGCTCGTAGCAAAATTGCAGAAAAAGCAGGCA 23 15 1 CTTCGAAAAGGAAGAAGCTCAGAATTCCCGGACT 23 106 1 AAGAAAAGCGGGAAAAATTAAGAAATCTGCTTAA 23 255 0 ATAAAAAATTTTAGAAAAGAAGAAAAGCGGGAAA 23 274 0 * ***** * *** MAP Score: 19.2135 Motif 7 TTCTCAAGGCTTAAGACGATTTCCTTTTTCATTATTATTCTA 0 15 0 GGGTAGCCTTTTTTAAACCTTTCAATCCTTGCATTCTTGTAT 0 69 0 CTTTAAGAGCTCTTTAGCCTTTAACTTCTTTTCGGGAAATTC 1 36 0 TTCTACGGCTTTCAGAGCTTTTTCCCTGTCCTTGGGGTGTAG 2 19 0 CTTGTTATAATCGGACTCCTTCTCCTGTTCTTTGAAAAACTT 4 110 0 GAATATAACAATTCTGACCTTTTTATTTTCGTGGTCCTCTTT 5 49 1 TTCTGAAAGTTTTTCTCCCTTTTTCACTTCTCCGCTTTTTCT 5 112 1 GAAATCGGAATACTCTTCCTCTTTGAATTCCTCAAGTGGTCT 5 172 1 AGAACCCAACTTCAAAACCTTTGACTATTCTTGATACTTCTA 6 132 0 TAAAACTTCCTTAGCAAGCTTTTGAGCTTCATCTCTCGTATC 10 65 0 GGGTATCGTCTTCCTTTCCTTTTTAATCTCTTCCTCTTTAAA 11 65 0 GTTCTTCTTAAAAATTCCCCTTTTGTATTCCCTGCTTACAGT 11 131 0 CACAGCTTCTTTCGGAAGCTTTTCGGTGTCGTACTCCTTTCC 15 46 0 AAAAGCTTTTTTCTTTTCCTTTCCAAGTTTTTACTAAATATA 16 161 0 TTCCACTTTTTAGCTAACCTTTTGAACCTCGCCTCGTCCCTG 18 50 0 CTGCTTTTTTTCCGCTTCCCTTTTTTCTTCCTCCTCCTCTTG 18 111 0 TCCTCTATAGTCAGAGTCCTTTTAAACTGCTTTTTTTCCGCT 18 137 0 GGATTTCTCCTCCTTTTAGAACTTCTTATTTTAAAAT 20 17 0 GTTCTGGGATTTCTTCCCTTTCTTGCACTCCTTACGGTTACT 23 151 0 TTTCTTAATTTTTCCCGCTTTTCTTCTTTTCTAAAATTTTTT 23 264 1 * ***** *** * MAP Score: 11.5469 Motif 8 AGTCTTTTAAAAGCCAAATTTT 10 2 1 TCGTTCTTGTTCTTCTAAACTTAATGGGGT 0 107 0 CTTCTCCTGTTCTTTGAAAAACTTCCCCTG 4 104 0 TAATATACTTTCTGTTAAAATTAAAACCTA 0 256 1 ATACACGAACTCTTCGAAAAGGAAGAAGCT 23 95 1 GTGTAAGCAGTTTTTTAAAATGAATCTTGT 13 22 0 TATTACTGATATTTTAAAACTTTAGTTTT 5 9 1 AAAAGATATTTTAAAATAAGAAGTTC 20 6 1 GATTTTTTAAACGGGCTTATAC 19 2 1 TGGGGTAGCCTTTTTTAAACCTTTCAATCC 0 83 0 TTTTCATTATTATTCTAAAAAT 0 2 0 GCTTTTCTTCTTTTCTAAAATTTTTTATTT 23 280 1 TTTAAAGAGTTCCTTGAAAAATTCTCCGAG 11 41 0 AGGTAAAAGTTCTTCTTAAAAATTCCCCTT 11 151 0 GATTATTTCTTCTTCTAAATCAAGATTACC 16 220 0 TCAAAACTTGTCCGTTAAACCTCGTTGTAG 17 24 0 ATTGAGAGCTTCTTTTCAACCTTCGAGCGA 7 47 1 ATAGTCAGAGTCCTTTTAAACTGCTTTTTT 18 143 0 TCCCTGCTCCTTTAAATAGGTGTTTAA 12 16 0 AATACTTTAAACACCTATTTAA 12 2 1 TTGAGAAATATCTTTAAAAATAGGAGTAGT 18 180 1 ********** MAP Score: 9.30755 Motif 9 CTCTTAAATTTTTCCCTCGTTCTTGTTCTTCTAAACTTAATG 0 111 0 AAAGTATTGATTTTCTTCGGTATCGTCCTTGTTATAATCGGA 4 137 0 ATTCTGAAAGTTTTTCTCCCTTTTTCACTTCTCCGCTTTTTC 5 111 1 GGGTATCGTCTTCCTTTCCTTTTTAATCTCTTCCTCTTTAAA 11 65 0 GGATTTCTCCTCCTTTTAGAACTTCTTATTTTAAAA 20 18 0 GTTCTGGGATTTCTTCCCTTTCTTGCACTCCTTACGGTTACT 23 151 0 GATTTCTTAATTTTTCCCGCTTTTCTTCTTTTCTAAAATTTT 23 262 1 ** * * * * *** * MAP Score: 3.37416 Motif 10 GAATACGTGGAAGAAGGAGACGAGGTAAGG 1 141 1 TATATACATAAAGAGGGACAACTTCGTTGT 4 51 0 AAGTTTTTCAAAGAACAGGAGAAGGAGTCC 4 110 1 GAGAAGTGAAAAAGGGAGAAAAACTTTCAG 5 114 0 TAGATAGAAAAAGCGGAGAAGTGAAAAAGG 5 129 0 GAGGAATTCAAAGAGGAAGAGTATTCCGAT 5 175 0 GTGGCTTCCAAAAAGAAGGAAATTGA 10 284 1 GAACTCTTTAAAGAGGAAGAGATTAAAAAG 11 59 1 GGAAGAGATTAAAAAGGAAAGGAAGACGAT 11 73 1 GCAGGGAATACAAAAGGGGAATTTTTAAGA 11 138 1 ATATCCGATGAAGAGGAGAAAAAAGAAGTT 14 10 0 CTTATAGAGGTAAAGGAAGATCTAGTTAGC 14 46 0 TTTATCCCTTAATAAGGGAATTTTATTTGC 16 112 0 AATCTTGATTTAGAAGAAGAAATAATCTAC 16 223 1 AAGGTTAGCTAAAAAGTGGAAAATAGTAAA 18 71 1 CACATAGTTCAAGAGGAGGAGGAAGAAAAA 18 102 1 GAGGAGGAAGAAAAAAGGGAAGCGGAAAAA 18 117 1 TATCTTTAAAAATAGGAGTAGTTG 18 188 1 AAGAAGTTCTAAAAGGAGGAGAAATCC 20 27 1 GAACTCTTCGAAAAGGAAGAAGCTCAGAAT 23 101 1 GAAGAAATCCCAGAACGGGAGAAGTTATAC 23 177 1 AAAAGAAGAAAAGCGGGAAAAATTAAGAAA 23 264 0 ********** MAP Score: 1.03167