AlignACE 3.0 10/20/99 AlignACE2 -i AA/AA_operons018_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944235652 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 aq_142 300 putative protein #1 leuB 300 3-isopropylmalate dehydrogenase #2 leuA1 81 2-isopropylmalate synthase #3 ilvB 300 acetolactate synthase large subunit #4 ftsH 49 cell division protein FtsH #5 ilvC 66 acetohydroxy acid isomeroreductase #6 leuD 300 3-isopropylmalate dehydratase #7 icd 113 isocitrate dehydrogenase #8 metE 44 tetrahydropteroyltriglutamate methyltransferase #9 aco 52 aconitase #10 aq_1791 40 putative protein #11 ntrC2 209 transcriptional regulator (NtrC family) #12 ilvH 27 acetolactate synthase #13 aq_2088 28 putative protein #14 leuA2 53 2-isopropylmalate synthase Motif 1 TCGTGAGGGTCAGAAGTTTAATAAGTTATTGATA 1 30 0 GGGATTGAAAATCAAGGGTAAAAATTTTATAAAG 1 113 0 TGCAATAGGGCTGAAGGGATTGAAAATCAAGGGT 1 128 0 CGGCTTTTATAAGAAGTTTTTTAACCCTTAACAA 2 23 1 AAGAATACTCCAGAAGGTTCAAAACAAGGCTCTG 3 44 1 GAAAATTAATATAAAGTTTACAAATTTATTTAAA 3 246 1 ATCAAAAGCACCGGAGGTATTGAAGAGAG 3 281 1 GAAGTACAAGAAGAAGGTTTGTAAATT 6 3 0 TCTCTCCAGAAAGAAGTTAAGGAAGGAAATAAAC 6 135 1 AACAAAAATCAAAAAGTGTTTTAAATTAACTTGA 7 39 1 ATTCATTTTGAAGAAGTGTGTCAAGTTAATTTAA 7 59 0 ATTTTAAAATAAGAAGTTCTAAAAGGAGGAGAAA 8 17 1 TAATTTTAAAATGAAGTTTTAAAATTGTTTTGAA 9 17 1 ACCACACGAAACGGAGGTTCGGAA 10 26 1 GAACTTTGTGAAAAAGGTTTTAAACAGTGAAAAG 11 134 1 TTCGTTCCGAAGAAAGTTCTTGAAAAGCTAAATT 11 177 1 * ******* ** MAP Score: 22.1681 Motif 2 TGGAAGATGGAGCTGTTATTAAAAATACCTCTCGAA 0 29 1 AGGTTTAGTAATAGAATTTAAAAACGGGGAGATTTA 0 163 1 ACTTTCCTTTATACTTAATAAAAATTCCCTATGGGA 0 266 1 CGCTTTATCAATAACTTATTAAACTTCTGACCCTCA 1 25 1 AATCAAGGGTAAAAATTTTATAAAGGTATACTCAAG 1 102 0 AAGGGTTAAAAAACTTCTTATAAAAGCCGATTATAA 2 16 0 TTAACCCTTAACAATCGTTAAAACTTTTCCTATTTT 2 43 1 CAAGTACATAAGCGTTGTGGAAAAGGAAGACGGGAC 3 92 1 GGAAGACGGGACAATTTTTGTAAAGGAAAACTTTGA 3 116 1 TGTAAAGGAAAACTTTGATAAAACGGATTACCACGC 3 134 1 TAAAACATTGAAAATTAATATAAAGTTTACAAATTT 3 237 1 TAAAGTTTACAAATTTATTTAAATATCAAAAGCACC 3 257 1 TTTGCAGTTTAACTATTTTTTAAAAGTAATCTTCAG 4 14 1 GCAGCTGAGAAGATGTCTTTAAAACTCGCAGAATAC 6 204 0 ACAAAAATCAAAAAGTGTTTTAAATTAACTTGACAC 7 40 1 TTAACTTGACACACTTCTTCAAAATGAATAAAATTA 7 64 1 AAAAGATATTTTAAAATAAGAAGTTCT 8 1 1 CTCCTTTCAAAACAATTTTAAAACTTCATTTTAAAA 9 20 0 CAAAGTTCGGATAGGCTTTGTAAAAGCAAAAGAGCG 11 106 0 AGCCTATCCGAACTTTGTGAAAAAGGTTTTAAACAG 11 125 1 CGTTCCGAAGAAAGTTCTTGAAAAGCTAAATTAAAA 11 179 1 AATAAATTATTAAACAGGAGGATTGTA 12 1 1 * * * ** **** * MAP Score: 18.7304 Motif 3 TACATTCAAGAATAAGGAGTGGAAGATG 0 4 1 TTAAAAATACCTCTCGAAAAGGAAAAGTATGAGA 0 47 1 TAAAGGAATATCCTGAAACGGGAACGATGTTAAT 0 81 1 CCAGATTACTCTATAGAAGGGGAAGGTTTAGTAA 0 140 1 AGTAATAGAATTTAAAAACGGGGAGATTTACACA 0 169 1 GATAGGAATAATAAAATAGGAAAAGTTTTAAC 2 59 0 TACATAAGCGTTGTGGAAAAGGAAGACGGGACAA 3 96 1 GACGGGACAATTTTTGTAAAGGAAAACTTTGATA 3 120 1 AGCTCTGGCTTTGAAAAAGAAGTACAAGAAGAAG 6 21 0 AGCTGCCTTATTTTGAAAGAAGTACAAATCCTCC 6 234 1 AAAAGATATTTTAAAATAAGAAGTTCTAAAAG 8 8 1 AAATAAGAAGTTCTAAAAGGAGGAGAAATCC 8 23 1 TAAAACTTCATTTTAAAATTAGAAACCT 9 4 0 TTTAAAATTGTTTTGAAAGGAGGTCAGT 9 34 1 TATCCGAACTTTGTGAAAAAGGTTTTAAACAGTG 11 129 1 CCGAAGAAAGTTCTTGAAAAGCTAAATTAAAAAT 11 183 1 AATAAATTATTAAACAGGAGGATTGTA 12 6 1 TTGAAAATATTTCTCAAATAAGAAAAGTCAACAG 14 24 0 ** * *** *** * MAP Score: 15.3941 Motif 4 TATTTTTTAAAAGTAATCTTCAGGAGGAGGTC 4 27 1 TTATTTAAATATCAAAAGCACCGGAGGTATTGAAGAG 3 271 1 AATAAATTATTAAACAGGAGGATTGTA 12 4 1 GTTCTTTATAATAAATCCTTCAGGAGGTCACGC 5 43 1 ATATTAGTCCACCACACGAAACGGAGGTTCGGAA 10 16 1 AAGTTTTAAAATTGTTTTGAAAGGAGGTCAGT 9 30 1 AAATTGTAAGATAATAATGTCGGGAGGTAGGTT 5 6 0 TTTAAAATAAGAAGTTCTAAAAGGAGGAGAAATCC 8 19 1 AAATAAGAAAAGTCAACAGAAAAGAGGAAAAAT 14 6 0 TTCAAAACAAGGCTCTGGCTCAGGAAGCTTTCAAGTA 3 61 1 TCTCTCTCCAGAAAGAAGTTAAGGAAGGAAATAAACA 6 133 1 ACGCAGGCAAGAACCATAAACCAGAGGGCGTGGTAAT 3 160 0 ACACAATAGACGTTTATGATCCGGAAGTGGCAAGAAA 0 198 1 CTGGCTTTGAAAAAGAAGTACAAGAAGAAGGTTTGTA 6 14 0 TGGGTGAAAGAAAGAATACTCCAGAAGGTTCAAAACA 3 33 1 CGGAAGTGGCAAGAAAAATTAAGCAGGAGCTTGTTCT 0 219 1 AGTACATAAGCGTTGTGGAAAAGGAAGACGGGACAAT 3 94 1 TACATTCAAGAATAAGGAGTGGAAGATGGA 0 3 1 AAAAGGAAAAGTATGAGATAAAGGAATATCCTGAAAC 0 63 1 * * ******** MAP Score: 13.8138 Motif 5 TGGGTGAAAGAAAGAATACTCCAGAAGGTTCAAAACAA 3 33 1 TGATGAAATGAAATCATGATGCAATAGGGCTGAAGGGA 1 143 0 CTATTTTTTAAAAGTAATCTTCAGGAGGAGGTC 4 26 1 GAGGAGAGCCAGATTACTCTATAGAAGGGGAAGGTTTA 0 132 1 CTGTTATTAAAAATACCTCTCGAAAAGGAAAAGTATGA 0 41 1 AATAAATTATTAAACAGGAGGATTGTA 12 3 1 TTTTAAAATAAGAAGTTCTAAAAGGAGGAGAAATCC 8 18 1 AAAGCCTATCCGAACTTTGTGAAAAAGGTTTTAAACAG 11 123 1 ATACTTAATAAAAATTCCCTATGGGAGGTAAGGC 0 276 1 CCGGAAGTGGCAAGAAAAATTAAGCAGGAGCTTGTTCT 0 218 1 TTCAAGTACATAAGCGTTGTGGAAAAGGAAGACGGGAC 3 90 1 TGTTCTTTATAATAAATCCTTCAGGAGGTCACGC 5 42 1 TAAGGGTTAAAAAACTTCTTATAAAAGCCGATTATAAT 2 15 0 GCTTTGAAAAAGAAGTACAAGAAGAAGGTTTGTAAATT 6 10 0 TTCGTTCCGAAGAAAGTTCTTGAAAAGCTAAATTAAAA 11 177 1 GGTTATTGAAAATATTTCTCAAATAAGAAAAGTCAAC 14 26 0 TTCTCTCTCCAGAAAGAAGTTAAGGAAGGAAATAAACA 6 132 1 AATGAAGTTTTAAAATTGTTTTGAAAGGAGGTCAGT 9 26 1 AAAAGGTTTTAAACAGTGAAAAGGTAAGGCGCTTCGTT 11 145 1 *** * * ** *** MAP Score: 12.9176 Motif 6 TACATTCAAGAATAAGGAGTGGAAGAT 0 5 1 GTAATAGAATTTAAAAACGGGGAGATTTACAC 0 170 1 GCAAGAAAAATTAAGCAGGAGCTTGTTCTAGT 0 227 1 CTCCAGAAGGTTCAAAACAAGGCTCTGGCTCA 3 51 1 TACATAAGCGTTGTGGAAAAGGAAGACGGGAC 3 96 1 GGGACAATTTTTGTAAAGGAAAACTTTGATAA 3 123 1 AAAAGTAATCTTCAGGAGGAGGTC 4 35 1 AAAAAGAAGTACAAGAAGAAGGTTTGTAAATT 6 10 0 AGCTCTGGCTTTGAAAAAGAAGTACAAGAAGA 6 23 0 ATTTTCTCTCTCCAGAAAGAAGTTAAGGAAGG 6 129 1 AGAAAGAAGTTAAGGAAGGAAATAAACAGTCC 6 142 1 TTGTACTTCTTTCAAAATAAGGCAGCTGAGAA 6 229 0 ATAGCAGACGTAGGAGACGAGGAGGATTTGTA 6 256 0 AAAAGATATTTTAAAATAAGAAGTTCTAAAA 8 9 1 AATAAGAAGTTCTAAAAGGAGGAGAAATCC 8 24 1 GGTTTCTAATTTTAAAATGAAGTTTTAAAATT 9 11 1 TTAAAATTGTTTTGAAAGGAGGTCAGT 9 35 1 TATCCGAACTTTGTGAAAAAGGTTTTAAACAG 11 129 1 AAGAACTTTCTTCGGAACGAAGCGCCTTACCT 11 166 0 AATAAATTATTAAACAGGAGGATTGTA 12 9 1 AGAAAAGTCAACAGAAAAGAGGAAAAAT 14 6 0 ** **** **** MAP Score: 10.4593 Motif 7 ACTGACCTCCTTTCAAAACAATTT 9 38 0 GGATTTCTCCTCCTTTTAGAACTTCTT 8 27 0 GAAGTACAAATCCTCCTCGTCTCCTACGTC 6 252 1 GACCTCCTCCTGAAGATTACT 4 38 0 CGTATCTTCTTTCCTCGAAGTAA 6 287 0 AATTTACAAACCTTCTTCTTGTACTTCTT 6 9 1 AATTGTCCCGTCTTCCTTTTCCACAACGCT 3 102 0 TCTGGAGTATTCTTTCTTTCACCCAGTCGG 3 28 0 GGAGGATTTGTACTTCTTTCAAAATAAGGC 6 238 0 TCCGACTGATTCCTTCCCGCTGAATTCCCT 6 171 1 TTCCTTCCTTAACTTCTTTCTGGAGAGAGA 6 133 0 TACAATCCTCCTGTTTAATAATTTA 12 12 0 AGTAATCTGGCTCTCCTCTCAAGTCTTTAT 0 120 0 ATTTTTCCTCTTTTCTGTTGAC 14 2 1 CACTTCCGAGATTTTCTCTCTCCAGAAAGA 6 119 1 CTTCTTCTTGTACTTCTTTTTCAAAGCCAG 6 21 1 TATCTCATACTTTTCCTTTTCGAGAGGTAT 0 53 0 CTATTACTAAACCTTCCCCTTCTATAGAGT 0 147 0 CGGACTGTTTATTTCCTTCCTTAACTTCTT 6 145 0 TATTGTGTAAATCTCCCCGTTTTTAAATTC 0 176 0 TCCTGCTTAATTTTTCTTGCCACTTCCGGA 0 217 0 AGTACTTTAAACTTTCCTTTATACTTAATA 0 256 1 ********** MAP Score: 9.38721 Motif 8 ATTAAAAATACCTCTCGAAAAGGAAAAGTA 0 46 1 AACTTCTGACCCTCACGAAACGAACGTTAA 1 46 1 AAGAAAGAATACTCCAGAAGGTTCAAAACA 3 40 1 GACCTCCTCCTGAAGATTACTTTTA 4 34 0 AACCTACCTCCCGACATTATTATCTT 5 6 1 GCGTGACCTCCTGAAGGATTTATTAT 5 50 0 AGATTTTCTCTCTCCAGAAAGAAGTTAAGG 6 127 1 AAAGATTTTACCTCTAGAGATTTATAACAA 7 14 1 TATTAGTCCACCACACGAAACGGAGGTTCG 10 17 1 ********** MAP Score: 7.27753 Motif 9 AAGGTTTAGTAATAGAATTTAAAAACGGGGAGAT 0 162 1 GGCTTTTATAAGAAGTTTTTTAACCCTTAACAAT 2 24 1 TTTGCAGTTTAACTATTTTTTAAAAGTAATCTTC 4 14 1 ACAAAAATCAAAAAGTGTTTTAAATTAACTTGAC 7 40 1 AAAAGATATTTTAAAATAAGAAGTT 8 1 1 CTAATTTTAAAATGAAGTTTTAAAATTGTTTTGA 9 16 1 GAACTTTGTGAAAAAGGTTTTAAACAGTGAAAAG 11 134 1 AATAAATTATTAAACAGGAGGATT 12 0 1 ** * ******* MAP Score: 2.53618 Motif 10 TTTAAAAACGGGGAGATTTACACAATAGACG 0 179 1 CACGAAACGAACGTTAATTTCCGCTAACCTG 1 59 1 AAATTTTTACCCTTGATTTTCAATCCCTTCA 1 120 1 GTTCTTGCCTGCGTGAATTACGCTCAGAGGC 3 183 1 AATCTCGGAAGTGTGAATTACGTAAAGGTTG 6 101 0 ATTCACACTTCCGAGATTTTCTCTCTCCAGA 6 114 1 AGTTTCTTTACGTGATTTGCGGAGTTATCC 11 9 1 TAGTATAAGACCTATAATTCCGAATATTGAA 11 41 0 TCTTATACTACCGATAATTCCGTCAAGCCCC 11 62 1 ********* * MAP Score: 2.22473