AlignACE 3.0 10/20/99 AlignACE2 -i AA/AA_operons020_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944235772 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 aq_027 72 hypothetical protein #1 aq_028 46 putative protein #2 aq_035 32 hypothetical protein #3 aq_083 264 hypothetical protein #4 aq_265 104 hypothetical protein #5 aq_340 28 hypothetical protein #6 aq_341 300 hypothetical protein #7 aq_429 274 putative protein #8 aq_563 163 hypothetical protein #9 gidA2 32 glucose inhibited division protein A #10 aq_1442 300 hypothetical protein #11 aq_1455 300 hypothetical protein Motif 1 TCTTCATTGTAAAGAAGCAGGAGAGGTACGGTTT 10 120 0 GGGCGTTCCGAAGGAAAGGGCAAATTTATCA 11 7 0 AATATACAATAAAGAACTGGAAAAAAGGCAGAAT 6 39 1 TGAGGATAAGAAGGAAGAAGAGAATATCCTCATA 11 148 1 TTACTCTAAAAAAGAGCTGGAAGAAACGCCCGAG 3 26 1 GAAGAAGTAAAAAGAGCCTGAAAATTACATAATC 10 239 1 AAACAAGATGAAAGAAAAGATAAAGTATCCCGAA 11 73 1 TCTACACCCCAAGGACAGGGAAAAAGCTCTGAAA 0 18 1 ATGGGCTTTAAAGGAAGTGACGGATAAAATAAAA 6 274 1 AGGTGTTGAAAAGGAAATTATGAATGTTTAAATT 8 102 0 AGTAAACGATAAAGAAAACAAGAACGCTGAGGAG 3 104 1 CTCCGTAAAGAATTAGAATAATACATCT 5 8 0 CATTAAACTAATAGAAGAGGCGGATAAAATAGTG 7 20 0 AGGACCCGATAAGGACTTCAGAAAGGTAAAGCTT 11 232 1 GGAATTACCGATAGAGTGGGAAGAGGTAGACATG 10 49 1 GCTTCTTTACAATGAAGACGAGGATTACACCGAA 10 136 1 AAATCTTCTAACGGAAGCGGTAAAGGAAAACCTA 6 89 1 CTTTACAACGAAAGCATATACAGAAGAGCCAAAA 3 179 0 ATGCTCCTTCAAAGCACACAAAAAGAAATAAACA 11 44 1 AAAAGCTCTGAAAGCCGTAGAAGAGCTCAAGGAA 0 39 1 CTGGAGACTTAAAGAAATATTAAAATCAAAGCTG 10 205 1 GCTCCTTCAAAAGGTAAAAGAGGAATTACCGATA 10 28 1 AATTACTTTCATAGAGGTAAAAAAGG 4 2 0 TGGGCTGGTAATGGAATACGAATAGGTTTTCCTT 6 111 0 ACATTACCCGAATGAGTTTATAAACTTTCTGGAA 6 211 1 GTACGTTTGTAAAGAGGATGCCGAAGCGAGAGGA 7 95 0 ****** * *** MAP Score: 23.3712 Motif 2 CTACACCCCAAGGACAGGGAAAAAGCTCTGAAA 0 19 1 TTAGATTTTTTCAGGAGGTAAAAAAATC 1 5 0 ACTCTAAAAAAGAGCTGGAAGAAACGCCCGAGA 3 28 1 AAACGCCCGAGAAGGTGGGAAATCGTAAAGAGA 3 49 1 ACAAGAACGCTGAGGAGGAAAAACCTCACGGGA 3 121 1 CAGAAGAGCCAAAAAAGGGAAAAATCCCATAGT 3 160 0 GATTATATTTAAAGTAGGGAAAATAA 4 88 1 TATACAATAAAGAACTGGAAAAAAGGCAGAATC 6 41 1 ATCTTCTAACGGAAGCGGTAAAGGAAAACCTAT 6 91 1 TCTTTGAAGCAAAAACGGGAAATTTGGCAGGAT 6 145 1 TGGTCAGGATAAAGAAGGAAAGATACATTACCC 6 187 1 CTTTAAAGGAAGTGACGGATAAAATAAAAAA 6 279 1 AACTAATAGAAGAGGCGGATAAAATAGTGGTCT 7 16 0 AATTCTACCAAGGGGTGGATAAAGT 7 259 1 GTGTGAAAGGGCTAAAAAGCTCCTTC 10 3 1 AAAAGCTCCTTCAAAAGGTAAAAGAGGAATTAC 10 24 1 AATTACCGATAGAGTGGGAAGAGGTAGACATGT 10 51 1 TATTAAAATCAAAGCTGGAAGAAGTAAAAAGAG 10 222 1 GCGTTCCGAAGGAAAGGGCAAATTTATCA 11 6 0 TCGCTATACAAGAGAAGTTAAAAGTGAGTTCGG 11 102 0 TACTTGAGGATAAGAAGGAAGAAGAGAATATCC 11 144 1 **** ** **** MAP Score: 22.4566 Motif 3 AAAAGCTCTGAAAGCCGTAGAAGAGCTCAAGGAA 0 39 1 TTACTCTAAAAAAGAGCTGGAAGAAACGCCCGAG 3 26 1 AGCTGGAAGAAACGCCCGAGAAGGTGGGAAATCG 3 40 1 TGTAAAAGTAAACGATAAAGAAAACAAGAACGCT 3 98 1 CATATACAGAAGAGCCAAAAAAGGGAAAAATCCC 3 165 0 TTACTTTCATAGAGGTAAAAAAGG 4 0 0 CTCCGTAAAGAATTAGAATAATACATCT 5 8 0 AATATACAATAAAGAACTGGAAAAAAGGCAGAAT 6 39 1 TTCTAACGGAAGCGGTAAAGGAAAACCTATTCGT 6 94 1 CGAGAGGATTAAAGTTCAAGGAAGAGGTCCTTAT 7 69 0 GTGTGAAAGGGCTAAAAAGCTCCTTCAAA 10 5 1 AGCTCCTTCAAAAGGTAAAAGAGGAATTACCGAT 10 27 1 AATTACCGATAGAGTGGGAAGAGGTAGACATGTA 10 51 1 TCTTCATTGTAAAGAAGCAGGAGAGGTACGGTTT 10 120 0 TATTAAAATCAAAGCTGGAAGAAGTAAAAAGAGC 10 222 1 GAAGAAGTAAAAAGAGCCTGAAAATTACATAATC 10 239 1 TCGCTATACAAGAGAAGTTAAAAGTGAGTTCGGG 11 101 0 AGTATGTACTTGAGGATAAGAAGGAAGAAGAGAA 11 138 1 TTGTATCTTTAAAGGAGAAGGAGGT 11 285 1 **** ****** MAP Score: 20.8572 Motif 4 AAACAAGAACGCTGAGGAGGAAAAACCTCACGG 3 119 1 ATATGCTTTCGTTGTAAAGGAAACCGCTTAAAA 3 194 1 ACGTTCCATTTCTGGAAAGGATAAC 3 249 1 TCTAACGGAAGCGGTAAAGGAAAACCTATTCGT 6 95 1 GATTTGAGGCACTGGTCAGGATAAAGAAGGAAA 6 175 1 CAGGGAATGGGCTTTAAAGGAAGTGACGGATAA 6 268 1 TATCTTTGTAGCTTATAAGGACCTCTTCCTTGA 7 55 1 AAACGCTTTGGCTCGTGAGGAAACTGGGAGACT 7 211 0 TTTTTCAGGTGTTGAAAAGGAAATTATGAATGT 8 109 0 TTGTCGGTGAACTTCCGAGGATCTGGAGACTTA 10 183 1 GACACAAACAACTTCAAAGGATAGTTTTATGGT 10 275 1 CATTTCGGGCGTTCCGAAGGAAAGGGCAAATTT 11 14 0 CTTTTTGTGTGCTTTGAAGGAGCATTTCGGGCG 11 36 0 AACCATTGTATCTTTAAAGGAGAAGGAGGT 11 280 1 **** ***** * MAP Score: 19.7483 Motif 5 CTTATAAGGACCTCTTCCTTGAACTTTAATCC 7 66 1 TGGAAAATTCCCATTACCTTGATTACTTCAGG 6 240 1 GATAAATTTGCCCTTTCCTTCGGAACGCCCGA 11 11 1 TTTTCCTTTACCGCTTCCGTTAGAAGATTTTC 6 87 0 CCCATAGTAACCTTTCCCGTGAGGTTTTTCCT 3 136 0 GCTTTTTAAGCGGTTTCCTTTACAACGAAAGC 3 198 0 CCTTTAAAGCCCATTCCCTGAAGTAATCAAGG 6 256 0 ACCTCCTTCTCCTTTAAAGATACAAT 11 284 0 GAAGTTCTTTTCCTTGAGCTCTTCTAC 0 55 0 AAACGTACCACCCCTCCCTGGAAGGGTACCTC 7 121 1 ATTTTATCCGTCACTTCCTTTAAAGCCCATTC 6 272 0 AGAGCTTTTTCCCTGTCCTTGGGGTGTAGATT 0 16 0 GCTGGACGTTCCATTTCTGGAAAGGATAAC 3 244 1 GGATACTTTATCTTTTCTTTCATCTTGTTTAT 11 71 0 TTTTCTTTATCGTTTACTTTTACAAGGCTGAA 3 90 0 ATTTTATCCGCCTCTTCTATTAGTTTAATGAT 7 24 1 ** ******* * MAP Score: 16.9815 Motif 6 CCGTAGAAGAGCTCAAGGAAAAGAACTTC 0 53 1 TTAACCTTACTCTAAAAAAGAGCTGGAAGAA 3 20 1 CTTCAGCCTTGTAAAAGTAAACGATAAAGAA 3 89 1 AAAAGTAAACGATAAAGAAAACAAGAACGCT 3 101 1 ATGCTTTCGTTGTAAAGGAAACCGCTTAAAA 3 196 1 CTTTCATAGAGGTAAAAAAGG 4 0 0 AATGATTATATTTAAAGTAGGGAAAATAA 4 85 1 TAACGGAAGCGGTAAAGGAAAACCTATTCGT 6 97 1 CACTGGTCAGGATAAAGAAGGAAAGATACAT 6 184 1 GGGAATGGGCTTTAAAGGAAGTGACGGATAA 6 270 1 GGAAGTGACGGATAAAATAAAAAA 6 286 1 GAGGATTAAAGTTCAAGGAAGAGGTCCTTAT 7 69 0 TTTCAGGTGTTGAAAAGGAAATTATGAATGT 8 109 0 TCTTTTACCTTTTGAAGGAGCTTTTTAGCCC 10 18 0 TCCTTCAAAAGGTAAAAGAGGAATTACCGAT 10 30 1 TCGTCTTCATTGTAAAGAAGCAGGAGAGGTA 10 126 0 GCTGGAAGAAGTAAAAAGAGCCTGAAAATTA 10 235 1 TTTTGTGTGCTTTGAAGGAGCATTTCGGGCG 11 36 0 AAATAAACAAGATGAAAGAAAAGATAAAGTA 11 69 1 TACTTGAGGATAAGAAGGAAGAAGAGAATAT 11 144 1 CCATTGTATCTTTAAAGGAGAAGGAGGT 11 282 1 * ********* MAP Score: 16.3311 Motif 7 CTACACCCCAAGGACAGGGAAAAAGCTCTGAAAGCCGT 0 19 1 AAAGCTCTGAAAGCCGTAGAAGAGCTCAAGGAAAAGAA 0 40 1 TACTCTAAAAAAGAGCTGGAAGAAACGCCCGAGAAGGT 3 27 1 GAAACGCCCGAGAAGGTGGGAAATCGTAAAGAGAATAG 3 48 1 GTAAAAGTAAACGATAAAGAAAACAAGAACGCTGAGGA 3 99 1 GAAAACAAGAACGCTGAGGAGGAAAAACCTCACGGGAA 3 117 1 CAGAAGAGCCAAAAAAGGGAAAAATCCCATAGTAACCT 3 155 0 CTGGACGTTCCATTTCTGGAAAGGATAAC 3 245 1 ATATACAATAAAGAACTGGAAAAAAGGCAGAATCTTTC 6 40 1 TCTTTGAAGCAAAAACGGGAAATTTGGCAGGATTTGAG 6 145 1 ACTGGTCAGGATAAAGAAGGAAAGATACATTACCCGAA 6 185 1 GAGTTTATAAACTTTCTGGAAAATTCCCATTACCTTGA 6 224 1 AGAGGATTAAAGTTCAAGGAAGAGGTCCTTATAAGCTA 7 63 0 ACGTACCACCCCTCCCTGGAAGGGTACCTCAGGACTCC 7 123 1 TCGCCGAGGTAATCCGAGGAAAAGTCTCCCAGTTTCCT 7 189 1 CTCCTTCAAAAGGTAAAAGAGGAATTACCGATAGAGTG 10 29 1 GGAATTACCGATAGAGTGGGAAGAGGTAGACATGTACG 10 49 1 CTTCATTGTAAAGAAGCAGGAGAGGTACGGTTTTGTAA 10 115 0 GACGAGGATTACACCGAAGAAGACGTTATATTTGTCGG 10 152 1 ATATTAAAATCAAAGCTGGAAGAAGTAAAAAGAGCCTG 10 221 1 GAAATAAACAAGATGAAAGAAAAGATAAAGTATCCCGA 11 68 1 GTACTTGAGGATAAGAAGGAAGAAGAGAATATCCTCAT 11 143 1 CGGCTTTGCTACTTACGGGGAGATAGGACCCGATAAGG 11 208 1 * * * ****** * MAP Score: 9.26265 Motif 8 AAGCTCTGAAAGCCGTAGAAGAGCTCAAGGAAA 0 41 1 ACTCTAAAAAAGAGCTGGAAGAAACGCCCGAGA 3 28 1 GCCTTGTAAAAGTAAACGATAAAGAAAACAAGA 3 94 1 ACAAGAACGCTGAGGAGGAAAAACCTCACGGGA 3 121 1 CATATACAGAAGAGCCAAAAAAGGGAAAAATCC 3 166 0 TTACTTTCATAGAGGTAAAAAAGG 4 1 0 TATACAATAAAGAACTGGAAAAAAGGCAGAATC 6 41 1 TTCTAACGGAAGCGGTAAAGGAAAACCTATTCG 6 94 1 CTTTAAAGGAAGTGACGGATAAAATAAAAAA 6 279 1 AACTAATAGAAGAGGCGGATAAAATAGTGGTCT 7 16 0 AATTCTACCAAGGGGTGGATAAAGT 7 259 1 CGAATTTTTCAGGTGTTGAAAAGGAAATTATGA 8 113 0 GTGTGAAAGGGCTAAAAAGCTCCTTCAAA 10 6 1 AGCTCCTTCAAAAGGTAAAAGAGGAATTACCGA 10 27 1 TAGAGTGGGAAGAGGTAGACATGTACGAGTACA 10 60 1 TTCATTGTAAAGAAGCAGGAGAGGTACGGTTTT 10 119 0 TATTAAAATCAAAGCTGGAAGAAGTAAAAAGAG 10 222 1 AGAAGTAAAAAGAGCCTGAAAATTACATAATCT 10 241 1 TTTCCTTCGGAACGCCCGAAATGCTCCTTCAAA 11 24 1 GCTCCTTCAAAGCACACAAAAAGAAATAAACAA 11 46 1 AGTATGTACTTGAGGATAAGAAGGAAGAAGAGA 11 138 1 ACGGGGAGATAGGACCCGATAAGGACTTCAGAA 11 222 1 TTGTATCTTTAAAGGAGAAGGAGGT 11 285 1 ** *** ** *** MAP Score: 7.27861 Motif 9 TCTACACCCCAAGGACAGGGAAAAAGCTCTGAA 0 18 1 AGATTTTTTCAGGAGGTAAAAAAATC 1 3 0 TACTCTAAAAAAGAGCTGGAAGAAACGCCCGAG 3 27 1 GAAACGCCCGAGAAGGTGGGAAATCGTAAAGAG 3 48 1 AACAAGAACGCTGAGGAGGAAAAACCTCACGGG 3 120 1 GCCAAACAGGAAGGTTATAACGTA 6 1 1 ATATACAATAAAGAACTGGAAAAAAGGCAGAAT 6 40 1 AATCTTCTAACGGAAGCGGTAAAGGAAAACCTA 6 90 1 AACTAATAGAAGAGGCGGATAAAATAGTGGTCT 7 16 0 AATTCTACCAAGGGGTGGATAAAGT 7 259 1 GTGTGAAAGGGCTAAAAAGCTCCTTCAAA 10 6 1 AAGCTCCTTCAAAAGGTAAAAGAGGAATTACCG 10 26 1 GGAATTACCGATAGAGTGGGAAGAGGTAGACAT 10 49 1 ATATTAAAATCAAAGCTGGAAGAAGTAAAAAGA 10 221 1 CAAAGCACACAAAAAGAAATAAACAAGATGAAA 11 53 1 ACTTGAGGATAAGAAGGAAGAAGAGAATATCCT 11 145 1 CCGTAAGTAGCAAAGCCGAAAAGTGGGGAGTCA 11 193 0 TTTGCTACTTACGGGGAGATAGGACCCGATAAG 11 212 1 TGTATCTTTAAAGGAGAAGGAGGT 11 286 1 * **** ** *** MAP Score: 4.12445 Motif 10 TACTAATTTAACCTTACTCTAAAAAAGAGCTG 3 13 1 AGCTGGAAGAAACGCCCGAGAAGGTGGGAAAT 3 40 1 AGGAGGAAAAACCTCACGGGAAAGGTTACTAT 3 133 1 GCTGGACGTTCCATTTCTGGAAAGGATAAC 3 244 1 AAGGAAAGATACATTACCCGAATGAGTTTATA 6 201 1 TGAGTTTATAAACTTTCTGGAAAATTCCCATT 6 223 1 TGGAAAATTCCCATTACCTTGATTACTTCAGG 6 240 1 CCTTTAAAGCCCATTCCCTGAAGTAATCAAGG 6 256 0 TTTTATCCGTCACTTCCTTTAAAGCCCATTCC 6 271 0 TTATAAGGACCTCTTCCTTGAACTTTAATCCT 7 67 1 AACGTACCACCCCTCCCTGGAAGGGTACCTCA 7 122 1 CTTTATCCACCCCTTGGTAGAATTTTACCATG 7 251 0 TTTGTCGGTGAACTTCCGAGGATCTGGAGACT 10 182 1 TCGGCTTTGCTACTTACGGGGAGATAGGACCC 11 207 1 ***** ** *** MAP Score: 1.50923