AlignACE 3.0 10/20/99 AlignACE2 -i AA/AA_operons020_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944235796 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 aq_027 72 hypothetical protein #1 aq_028 46 putative protein #2 aq_035 32 hypothetical protein #3 aq_083 264 hypothetical protein #4 aq_265 104 hypothetical protein #5 aq_340 28 hypothetical protein #6 aq_341 300 hypothetical protein #7 aq_429 274 putative protein #8 aq_563 163 hypothetical protein #9 gidA2 32 glucose inhibited division protein A #10 aq_1442 300 hypothetical protein #11 aq_1455 300 hypothetical protein Motif 1 TCCCGTGAGGTTTTTCCTCCTCAGCGTTCTTGT 3 121 0 TCTCGGGCGTTTCTTCCAGCTCTTTTTTAGAGT 3 28 0 GATTCTGCCTTTTTTCCAGTTCTTTATTGTATA 6 41 0 TTATTTTCCCTACTTTAAATATAATC 4 88 0 AGACCACTATTTTATCCGCCTCTTCTATTAGTT 7 16 1 CTCTTTTTACTTCTTCCAGCTTTGATTTTAATA 10 222 0 TACTATGGGATTTTTCCCTTTTTTGGCTCTTCT 3 159 1 ACATGTCTACCTCTTCCCACTCTATCGGTAATT 10 51 0 GATTTTTTTACCTCCTGAAAAAATCTAA 1 5 1 TTTCAGAGCTTTTTCCCTGTCCTTGGGGTGTAG 0 19 0 GGATATTCTCTTCTTCCTTCTTATCCTCAAGTA 11 144 0 TGATAAATTTGCCCTTTCCTTCGGAACGC 11 6 1 TCTCTTTACGATTTCCCACCTTCTCGGGCGTTT 3 49 0 ATCCTGCCAAATTTCCCGTTTTTGCTTCAAAGA 6 145 0 CCGAACTCACTTTTAACTTCTCTTGTATAGCGA 11 102 1 ATAGGTTTTCCTTTACCGCTTCCGTTAGAAGAT 6 91 0 GGGTAATGTATCTTTCCTTCTTTATCCTGACCA 6 187 0 ACTTTATCCACCCCTTGGTAGAATT 7 259 0 GAAGGAGCTTTTTAGCCCTTTCACAC 10 3 0 GTAATTCCTCTTTTACCTTTTGAAGGAGCTTTT 10 24 0 AGATTATGTAATTTTCAGGCTCTTTTTACTTCT 10 241 0 TTTTTTATTTTATCCGTCACTTCCTTTAAAG 6 279 0 **** ** **** MAP Score: 22.0765 Motif 2 GAAGTTCTTTTCCTTGAGCTCTTCTACGGCT 0 51 0 GATTTTTTTACCTCCTGAAAAAATCTAAAA 1 7 1 TTCTCGGGCGTTTCTTCCAGCTCTTTTTTAGAG 3 29 0 TCTTTATCGTTTACTTTTACAAGGCTGAAGGGG 3 86 0 CCGTGAGGTTTTTCCTCCTCAGCGTTCTTGTTT 3 119 0 TTTTAAGCGGTTTCCTTTACAACGAAAGCATAT 3 194 0 CCTTTTTTACCTCTATGAAAGTAATTAAT 4 6 1 ACGAATAGGTTTTCCTTTACCGCTTCCGTTAGA 6 95 0 AAAATTCCCATTACCTTGATTACTTCAGGGAAT 6 243 1 TTTCCTCGGATTACCTCGGCGAGGACGATGTAG 7 178 0 AGTCTCCCAGTTTCCTCACGAGCCAAAGCGTTT 7 211 1 ACATTCATAATTTCCTTTTCAACACCTGAAAAA 8 109 1 AATTCCTCTTTTACCTTTTGAAGGAGCTTTTTA 10 22 0 ACGTACTTACTTACCTCGGTTACAAAACCGTAC 10 96 1 TTACAAAACCGTACCTCTCCTGCTTCTTTACAA 10 115 1 CAGGCTCTTTTTACTTCTTCCAGCTTTGATTTT 10 226 0 AAATTTGCCCTTTCCTTCGGAACGCCCGAAATG 11 14 1 TCTTCCTTCTTATCCTCAAGTACATACTGCCTC 11 133 0 TTGTAAAGCTTTACCTTTCTGAAGTCCTTATCG 11 238 0 ******* * ** MAP Score: 21.5457 Motif 3 GAAGTTCTTTTCCTTGAGCTCTTCTAC 0 55 0 TTTTCTTTATCGTTTACTTTTACAAGGCTGAA 3 90 0 CCCATAGTAACCTTTCCCGTGAGGTTTTTCCT 3 136 0 GCTTTTTAAGCGGTTTCCTTTACAACGAAAGC 3 198 0 GCTGGACGTTCCATTTCTGGAAAGGATAAC 3 244 1 TTATTTTCCCTACTTTAAATATAATCAT 4 86 0 TTTTCCTTTACCGCTTCCGTTAGAAGATTTTC 6 87 0 TGGAAAATTCCCATTACCTTGATTACTTCAGG 6 240 1 CCTTTAAAGCCCATTCCCTGAAGTAATCAAGG 6 256 0 ATTTTATCCGTCACTTCCTTTAAAGCCCATTC 6 272 0 ATTTTATCCGCCTCTTCTATTAGTTTAATGAT 7 24 1 CTTATAAGGACCTCTTCCTTGAACTTTAATCC 7 66 1 AAACGTACCACCCCTCCCTGGAAGGGTACCTC 7 121 1 GATAAATTTGCCCTTTCCTTCGGAACGCCCGA 11 11 1 GGATACTTTATCTTTTCTTTCATCTTGTTTAT 11 71 0 ACCTCCTTCTCCTTTAAAGATACAAT 11 284 0 ** ******* * MAP Score: 17.8816 Motif 4 CTCGTACATGTCTACCTCTTCCCACTCTATC 10 58 0 CACTATTTTATCCGCCTCTTCTATTAGTTTA 7 20 1 CCCGTGAGGTTTTTCCTCCTCAGCGTTCTTG 3 122 0 TAGGTTTTCCTTTACCGCTTCCGTTAGAAGA 6 92 0 AATGAAAGATTCTGCCTTTTTTCCAGTTCTT 6 50 0 TTTTCCCTTTTTTGGCTCTTCTGTATATGCT 3 170 1 TCAGGCTCTTTTTACTTCTTCCAGCTTTGAT 10 229 0 GGGCGTTTCTTCCAGCTCTTTTTTAGAGTAA 3 26 0 AAACCGTACCTCTCCTGCTTCTTTACAATGA 10 120 1 TATGAGGATATTCTCTTCTTCCTTCTTATCC 11 151 0 GTTCTTTTCCTTGAGCTCTTCTACGGCTTTC 0 48 0 GTAATGTATCTTTCCTTCTTTATCCTGACCA 6 187 0 ACCTCCTTCTCCTTTAAAGAT 11 289 0 GACAAATATAACGTCTTCTTCGGTGTAATCC 10 157 0 AACATTCATAATTTCCTTTTCAACACCTGAA 8 108 1 CTGCCTTTTTTCCAGTTCTTTATTGTATATT 6 39 0 TCCTCTCGCTTCGGCATCCTCTTTACAAACG 7 95 1 TCCTGCCAAATTTCCCGTTTTTGCTTCAAAG 6 146 0 TCCCACCTTCTCGGGCGTTTCTTCCAGCTCT 3 38 0 TTCGGTGTAATCCTCGTCTTCATTGTAAAGA 10 139 0 GCTTATAAGGACCTCTTCCTTGAACTTTAAT 7 65 1 TCTTTAAGTCTCCAGATCCTCGGAAGTTCAC 10 189 0 *** ******* MAP Score: 15.5491 Motif 5 GGCTTTCAGAGCTTTTTCCCTGTCCTTGGGGT 0 23 0 GAAGTTCTTTTCCTTGAGCTCTTCTA 0 56 0 CTTCTCGGGCGTTTCTTCCAGCTCTTTTTTAG 3 31 0 AAAGAGAATAGCCCCTTCAGCCTTGTAAAAGT 3 75 1 TTTCCCGTGAGGTTTTTCCTCCTCAGCGTTCT 3 124 0 TCCCATAGTAACCTTTCCCGTGAGGTTTTTCC 3 137 0 TCGGGTAATGTATCTTTCCTTCTTTATCCTGA 6 190 0 TTCCTTTAAAGCCCATTCCCTGAAGTAATCAA 6 258 0 GCTTATAAGGACCTCTTCCTTGAACTTTAATC 7 65 1 AGTCCTGAGGTACCCTTCCAGGGAGGGGTGGT 7 127 0 GAAACTGGGAGACTTTTCCTCGGATTACCTCG 7 193 0 GAGCTTTTTAGCCCTTTCACAC 10 0 0 GTACATGTCTACCTCTTCCCACTCTATCGGTA 10 54 0 GGCTCTTTTTACTTCTTCCAGCTTTGATTTTA 10 225 0 TGATAAATTTGCCCTTTCCTTCGGAACGCCCG 11 10 1 CGCCCGAAATGCTCCTTCAAAGCACACAAAAA 11 36 1 GAGGATATTCTCTTCTTCCTTCTTATCCTCAA 11 147 0 ********* * MAP Score: 15.123 Motif 6 CACCCCAAGGACAGGGAAAAAGCTCTGAAAGCCGTAGAAG 0 22 1 GATTTTTTTACCTCCTGAAAAAATCTAAAATTAAATTTTA 1 10 1 ATTTAACCTTACTCTAAAAAAGAGCTGGAAGAAACGCCCG 3 18 1 TAGCCCCTTCAGCCTTGTAAAAGTAAACGATAAAGAAAAC 3 83 1 AGAAGAGCCAAAAAAGGGAAAAATCCCATAGTAACCTTTC 3 152 0 TTGTAAAGGAAACCGCTTAAAAAGCCTATAATACATATTG 3 205 1 TTATGGATGTATTATGATAAAAATCAATAAGTAATTAATT 4 32 0 GGAAGGTTATAACGTAGTAAAAATATACAATAAAGAACTG 6 18 1 TGGTCAGGATAAAGAAGGAAAGATACATTACCCGAATGAG 6 187 1 ACCTTGATTACTTCAGGGAATGGGCTTTAAAGGAAGTGAC 6 255 1 TGCCGAAGCGAGAGGATTAAAGTTCAAGGAAGAGGTCCTT 7 71 0 CGCCGAGGTAATCCGAGGAAAAGTCTCCCAGTTTCCTCAC 7 190 1 CGTTTTAACACCCATGGTAAAATTCTACCAAGGGGTGGAT 7 239 1 TTCCTTTTCAACACCTGAAAAATTCGGGAAATAATTTAAA 8 120 1 GTGTGAAAGGGCTAAAAAGCTCCTTCAAAAGGTAAAA 10 7 1 CAAAGCTGGAAGAAGTAAAAAGAGCCTGAAAATTACATAA 10 231 1 TTCCTTCGGAACGCCCGAAATGCTCCTTCAAAGCACACAA 11 25 1 TGCTCCTTCAAAGCACACAAAAAGAAATAAACAAGATGAA 11 45 1 AATAAACAAGATGAAAGAAAAGATAAAGTATCCCGAACTC 11 70 1 TAAGGACTTCAGAAAGGTAAAGCTTTACAACGAAACTGCA 11 241 1 * * * **** ** * MAP Score: 14.8066 Motif 7 GAAAATCTACACCCCAAGGACAGGGAAAAAGCTC 0 13 1 GCCGTAGAAGAGCTCAAGGAAAAGAACTTC 0 52 1 CTGGAAGAAACGCCCGAGAAGGTGGGAAATCGTA 3 42 1 GGAGGAAAAACCTCACGGGAAAGGTTACTATGGG 3 134 1 GTTATCCTTTCCAGAAATGGAACGTCCAGC 3 244 0 CTCCGTAAAGAATTAGAATAATACAT 5 12 0 TAAAAATATACAATAAAGAACTGGAAAAAAGGCA 6 35 1 TACCTTGATTACTTCAGGGAATGGGCTTTAAAGG 6 254 1 AGGGAATGGGCTTTAAAGGAAGTGACGGATAAAA 6 269 1 AGAGGATTAAAGTTCAAGGAAGAGGTCCTTATAA 7 67 0 CTGAGGTACCCTTCCAGGGAGGGGTGGTACGTTT 7 121 0 TCGCCGAGGTAATCCGAGGAAAAGTCTCCCAGTT 7 189 1 TGGTAAAATTCTACCAAGGGGTGGATAAAGT 7 253 1 TGTCGGTGAACTTCCGAGGATCTGGAGACTTAAA 10 184 1 ACACAAACAACTTCAAAGGATAGTTTTATGGTAA 10 276 1 ACCATTGTATCTTTAAAGGAGAAGGAGGT 11 281 1 * ******* ** MAP Score: 14.4989 Motif 8 CGGGCGTTTCTTCCAGCTCTTTTTTAGAGTAAGG 3 24 0 CGTGAGGTTTTTCCTCCTCAGCGTTCTTGTTTTC 3 117 0 TCTGCCTTTTTTCCAGTTCTTTATTGTATATTTT 6 37 0 CGTATTCCATTACCAGCCCATCTTTGAAGCAAAA 6 125 1 ATTACCAGACCACTATTTTATCCGCC 7 2 1 TTTACAAACGTACCACCCCTCCCTGGAAGGGTAC 7 116 1 CCTGAATCAAAACCACTACATCGTCCTCGCCGAG 7 163 1 ACTTTATCCACCCCTTGGTAGAATTTTAC 7 255 0 TACAAAACCGTACCTCTCCTGCTTCTTTACAATG 10 116 1 CTTCGGTGTAATCCTCGTCTTCATTGTAAAGAAG 10 137 0 ****** ** * * MAP Score: 5.92187 Motif 9 TTTACGATTTCCCACCTTCTCGGGCGTTTCTTC 3 45 0 GTATTCCATTACCAGCCCATCTTTGAAGCAAAA 6 126 1 CTTTATCCTGACCAGTGCCTCAAATCCTGCCAA 6 168 0 CTGAATCAAAACCACTACATCGTCCTCGCCGAG 7 164 1 GGGATTCGAACCCACGACCTCAGGCTTACGAAG 8 30 1 TCTACCTCTTCCCACTCTATCGGTAATTCCTCT 10 46 0 TCTTTAAGTCTCCAGATCCTCGGAAGTTCACCG 10 187 0 CGAAACTGCAACCATTGTATCTTTAAAGGAGAA 11 271 1 ACCTCCTTCTCCTTTAAAGATAC 11 287 0 ***** **** * MAP Score: 2.67014 Motif 10 TCTTTACGATTTCCCACCTTCTCGGGCGTTTCTTC 3 45 0 TCGTATTCCATTACCAGCCCATCTTTGAAGCAAAA 6 124 1 TTCTTTATCCTGACCAGTGCCTCAAATCCTGCCAA 6 168 0 TCCTGAATCAAAACCACTACATCGTCCTCGCCGAG 7 162 1 GTGGGATTCGAACCCACGACCTCAGGCTTACGAAG 8 28 1 TGTCTACCTCTTCCCACTCTATCGGTAATTCCTCT 10 46 0 TTTCTTTAAGTCTCCAGATCCTCGGAAGTTCACCG 10 187 0 * **** **** * MAP Score: 1.97689 Motif 11 GAATGTAGTATATATACTTTATAAGGTAT 2 13 1 GAAAGGTTACTATGGGATTTTTCCCTTTTT 3 152 1 GGCTCTTCTGTATATGCTTTCGTTGTAAAG 3 183 1 CAATATGTATTATAGGCTTTTTAAGCGGTT 3 215 0 CGAATGAGTTTATAAACTTTCTGGAAAATT 6 219 1 TACTTCAGGGAATGGGCTTTAAAGGAAGTG 6 263 1 GTGTCAAGATTATGTAATTTTCAGGCTCTT 10 250 0 TATTTCTTTTTGTGTGCTTTGAAGGAGCAT 11 44 0 AGCGAGGCAGTATGTACTTGAGGATAAGAA 11 130 1 ********** MAP Score: 1.91908 Motif 12 GATTTTTTTACCTCCTGAAAAAATCTAAAA 1 9 1 AGGAGGAAAAACCTCACGGGAAAGGTTACTA 3 133 1 CCTTTTTTACCTCTATGAAAGTAATTAAT 4 8 1 GAGTTTATAAACTTTCTGGAAAATTCCCATT 6 224 1 TACCTTGATTACTTCAGGGAATGGGCTTTAA 6 254 1 TATAAGGACCTCTTCCTTGAACTTTAATCCT 7 68 1 AACGTACCACCCCTCCCTGGAAGGGTACCTC 7 122 1 TTGTCGGTGAACTTCCGAGGATCTGGAGACT 10 183 1 GGATCTGGAGACTTAAAGAAATATTAAAATC 10 201 1 GACACAAACAACTTCAAAGGATAGTTTTATG 10 275 1 CGGCTTTGCTACTTACGGGGAGATAGGACCC 11 208 1 ****** **** MAP Score: 1.35399 Motif 13 GCTCTGAAAGCCGTAGAAGAGCTCAAGGAA 0 43 1 TTTTTTCAGGAGGTAAAAAAATC 1 3 0 GAAGAAACGCCCGAGAAGGTGGGAAATCGT 3 45 1 GTAAAAGTAAACGATAAAGAAAACAAGAAC 3 99 1 AACAAGAACGCTGAGGAGGAAAAACCTCAC 3 120 1 AAAAACCTCACGGGAAAGGTTACTATGGGA 3 139 1 GAGCCAAAAAAGGGAAAAATCCCATAGTAA 3 158 0 CGTTCCATTTCTGGAAAGGATAAC 3 250 1 ACTTTCATAGAGGTAAAAAAGG 4 2 0 CTCCGTAAAGAATTAGAATAAT 5 16 0 TTACCGCTTCCGTTAGAAGATTTTCTATAT 6 82 0 CTAACGGAAGCGGTAAAGGAAAACCTATTC 6 96 1 GGCACTGGTCAGGATAAAGAAGGAAAGATA 6 182 1 ATAGAAGAGGCGGATAAAATAGTGGTCTGG 7 14 0 TTAAAGTTCAAGGAAGAGGTCCTTATAAGC 7 65 0 CTCCTTCAAAAGGTAAAAGAGGAATTACCG 10 29 1 CCTCGTCTTCATTGTAAAGAAGCAGGAGAG 10 129 0 GAGGATTACACCGAAGAAGACGTTATATTT 10 155 1 GGATCTGGAGACTTAAAGAAATATTAAAAT 10 201 1 AGCTGGAAGAAGTAAAAAGAGCCTGAAAAT 10 234 1 TATGTACTTGAGGATAAGAAGGAAGAAGAG 11 140 1 GAGATAGGACCCGATAAGGACTTCAGAAAG 11 227 1 ACCTCCTTCTCCTTTAAAGATACAATGGTT 11 280 0 ********** MAP Score: 0.525495