AlignACE 3.0 10/20/99
AlignACE2 -i AA/AA_operons021_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944235819
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	aq_1103	45	putative protein
#1	ilvC	66	acetohydroxy acid isomeroreductase
#2	efp	187	elongation factor P
#3	aq_1554	41	hypothetical protein
#4	fabG	59	3-oxoacyl-[acyl-carrier-protein] reductase

Motif 1
AATAATGTCGGGAGGTAGGTT         	1	1	0
AAATCCTTCAGGAGGTCACGC         	1	55	1
ATTAGATACTGGTGATATGGTTGCGGGGGC	2	23	1
GATATGGTTGCGGGGGCGGGATTTGAACCC	2	36	1
CTCATAACCCGGAGGTCGCGGGTTCAAATC	2	55	0
TTTGGCAACGCGGGGTGGAGCAGCCTGGTA	2	95	0
GGGGACTTGACGAGATAAGATTTTTTCTAT	2	135	0
CTCAAGTGGAGGGGAAAGGGGACTTGACGA	2	152	0
        AGGGCGGTATGATACTATTTTA	3	2	1
TAAAGGTCTCGGAGGTAGAAA         	3	30	1
          **********
MAP Score: 6.48576

Motif 2
        AGTTAAATTAAATTTAATACTTAACTCTACA	0	2	1
CCCGACATTATTATCTTACAATTTGTTCTTTATAATAAA	1	19	1
CTTACAATTTGTTCTTTATAATAAATCCTTCAGGAGGTC	1	33	1
      GGGATTTTATTTTATTAGATACTGGTGATATGG	2	4	1
TCCCCTCCACTTGAGTTAAAATATCTCCTC         	2	167	1
          **   *** * *   * **
MAP Score: 5.13415

Motif 3
        AGTTAAATTAAATTTAATACTT	0	2	1
AATTTGTTCTTTATAATAAATCCTTCAGGA	1	38	1
CCAGTATCTAATAAAATAAAATCCC     	2	5	0
TGCCAAATTATTAATATATAGAAAAAATCT	2	118	1
TCCACTTGAGTTAAAATATCTCCTC     	2	172	1
AGCCCCTCACTAAAAATATAGCAATCTGAG	4	10	1
          **********
MAP Score: 3.4646