AlignACE 3.0 10/20/99 AlignACE2 -i AA/AA_operons022_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944235825 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 pkcI 300 protein kinase C inhibitor (HIT family) #1 ribA 215 GTP cyclohydrolase II #2 ribD2 139 riboflavin specific deaminase #3 aroE 266 shikimate 5-dehydrogenase #4 aq_1133 68 putative protein #5 proB 29 glutamate 5-kinase #6 nuoH2 75 NADH dehydrogenase I chain H #7 arsR 25 transcriptional regulator (ArsR family) #8 aq_1388 242 hypothetical protein #9 ctrA2 56 cation transporting ATPase (E1-E2 family) #10 mutT 28 8-OXO-dGTPase domain (mutT domain) #11 metE 44 tetrahydropteroyltriglutamate methyltransferase Motif 1 TTTTTCTTGCCACTTCCGGATCATAAACGTCT 0 29 1 TATTGTGTAAATCTCCCCGTTTTTAAATTCTA 0 60 1 CTATTACTAAACCTTCCCCTTCTATAGAGTAA 0 89 1 CTATTAACATCGTTCCCGTTTCAGGATATTCC 0 149 1 TTATCTCATACTTTTCCTTTTCGAGAGGTATT 0 182 1 TAACAGCTCCATCTTCCACTCCTTATTCTTGA 0 219 1 GCTTATTCTCAACTCCCTTTCCGTAAATTTCC 1 41 1 CAGGGAGCCACCCTTCCCTTCTTTTCCTCTTA 1 74 1 AAAAGCTTAACCTTTACTCTCCTCATTTTCCA 1 136 1 TACTCTCCTCATTTTCCATTCCTCCGTAGATC 1 150 1 AGGAAGACACCGTTTACCTTTCCTTTGAAGGA 3 113 1 CCCGCTGAGAATCTTAATTTCCT 8 1 0 TTGATAAAGCAGTTCACAGTTCTGACAATTTG 8 34 0 CACGTGTTTTACTTCACCGTCCACGACCAGAA 8 166 0 CTCTCACCCTCCGATAAGCTCT 8 230 0 TATTATCTTCAATTTCACAAATTTAT 9 4 1 * ***** **** MAP Score: 14.8093 Motif 2 AACCTCCTTCAAAGGAAAGGTAAACGGTGT 3 119 0 AGCGACCTTAAGAGGAAAAGAAGGGAAGGG 1 84 0 AGAGGAAAAGAAGGGAAGGGTGGCTCCCTG 1 74 0 TACCTCTCGAAAAGGAAAAGTATGAGATAA 0 182 0 AGGAAACCCGGAAGGAAGAGCGACCTTAAG 1 102 0 AGAAGTTCTAAAAGGAGGAGAAATCC 11 28 1 TCTGATCTACGGAGGAATGGAAAATGAGGA 1 155 0 GAAATCGTAAAAAGAAAAGGTATTGATGCG 8 75 1 ACTCTATAGAAGGGGAAGGTTTAGTAATAG 0 89 0 AATCACTTCGGGAGGAAGGT 6 65 1 TAAAGACTTGAGAGGAGAGCCAGATTACTC 0 115 0 GAAAATGAGGAGAGTAAAGGTTAAGCTTTT 1 136 0 GGCGTAGCTCAGAGGTAGAGCACCTGCTTC 2 56 1 CACGACCAGAACAGGAGTGGTCATCACCCC 8 147 0 GTGGAAATTTACGGAAAGGGAGTTGAGAAT 1 45 0 AGTATGAGATAAAGGAATATCCTGAAACGG 0 164 0 TCATAAATTTACGGAAAGAGTGTTATGATA 9 33 0 ********** MAP Score: 14.1676 Motif 3 CCAGGCGTGCTTATTCTCAACTCCCTTTCCGT 1 33 1 CTCAACTCCCTTTCCGTAAATTTCCACAGGGA 1 48 1 TACATAAGTTTTTCTTTAAATTTATTCCT 1 196 1 GCCCGCTTTTTATTATTAAATTTTATAATGGT 2 27 0 CGCTCCAAATTTTTGTACAATTTTGCTT 2 121 1 CCACTTGACGTTTCCCTTAATTACTGTATCAA 3 191 0 ATTTTAACATTTTCTTAAATTGAATTTAAAT 4 9 1 CTTTTCTTATTTACCCTCAATTAAATTTTTGT 6 23 1 TCAATTAAATTTTTGTTAAACTTAAAAATCAC 6 39 1 AAATGAAATTTTATATAAATTTTTC 7 4 0 TATTATCTTCAATTTCACAAATTT 9 2 1 GGAAAGAGTGTTATGATAAATTTGTGAAATTG 9 19 0 CATAACACTCTTTCCGTAAATTTATGAAGT 9 36 1 TTAGAACTTCTTATTTTAAAATATCTTTT 11 7 0 **** ****** MAP Score: 13.4607 Motif 4 AGAACAAGCTCCTGCTTAATTTTTCTTG 0 8 1 TTGTGTAAATCTCCCCGTTTTTAAATTCTA 0 62 1 ATTACTAAACCTTCCCCTTCTATAGAGTAA 0 91 1 TTATCTCATACTTTTCCTTTTCGAGAGGTA 0 182 1 TTAATAACAGCTCCATCTTCCACTCCTTAT 0 215 1 CCATCTTCCACTCCTTATTCTTGAATGTAA 0 227 1 TTATTCTCAACTCCCTTTCCGTAAATTTCC 1 43 1 CCCTTCCCTTCTTTTCCTCTTAAGGTCGCT 1 84 1 CTTAAGGTCGCTCTTCCTTCCGGGTTTCCT 1 102 1 AACCTTTACTCTCCTCATTTTCCATTCCTC 1 144 1 CTCTGAGCTACGCCCGCTTTTTATTATTAA 2 40 0 GAAGCAGGTGCTCTACCTCTGAGCTACGCC 2 56 0 AGAGGTAGAGCACCTGCTTCCCAAGCAGGA 2 66 1 AACCGGCGACCTCCTGCTTGGGAAGCAGGT 2 77 0 CGAGTCCCGTCGCCCGCTCCAAATTTTTGT 2 107 1 GTGATGACCACTCCTGTTCTGGTCGTGGAC 8 150 1 CTCTCACCCTCCGATAAGCTCT 8 230 0 GGATTTCTCCTCCTTTTAGAACTTCT 11 28 0 ********** MAP Score: 13.4022 Motif 5 GAAGGTTGAAGAAATTGAAAAAGTGCTCGAAAAAATAAG 3 27 1 AGTGGCAAGAAAAATTAAGCAGGAGCTTGTTCT 0 4 0 ACACCATTATAAAATTTAATAATAAAAAGCGGGCGTAGC 2 25 1 TATTGATGCGAAAGTTGAAAAAGTCGTGGACATTCAGGA 8 95 1 GGACATTCAGGAAGTTTTAAAGTACGGGGTGATGACCAC 8 122 1 TTTAAAATAAGAAGTTCTAAAAGGAGGAGAAATCC 11 19 1 AAGCAAAATTGTACAAAAATTTGGAGCGGGCGA 2 116 0 TTACGGAAAGGGAGTTGAGAATAAGCACGCCTGGATTAA 1 28 0 AATTTTTGTTAAACTTAAAAATCACTTCGGGAGGAAGGT 6 46 1 GTTTAGTAATAGAATTTAAAAACGGGGAGATTTACACAA 0 62 0 ATTTAAAGAAAAACTTATGTATAATAAAGTTTTCTGATC 1 178 0 CAAGCTCGTAGATATTAAGGAAGACACCGTTTACCTTTC 3 96 1 CGGAGGAATGGAAAATGAGGAGAGTAAAGGTTAAGCTTT 1 137 0 AGGAAATTAAGATTCTCAGCGGGACAAATTG 8 2 1 AGTCGTTAGCGAAATCGTAAAAAGAAAAGGTATTGATGC 8 65 1 AAATGAAATTTTATATAAATTTTTC 7 2 0 ****** ** * * MAP Score: 9.45256 Motif 6 ATTACTAAACCTTCCCCTTCTATAGAGTAATCTGG 0 91 1 GAGTAATCTGGCTCTCCTCTCAAGTCTTTATGTAC 0 115 1 CTATTAACATCGTTCCCGTTTCAGGATATTCCTTT 0 149 1 TTATCTCATACTTTTCCTTTTCGAGAGGTATTTTT 0 182 1 TGCTTATTCTCAACTCCCTTTCCGTAAATTTCCAC 1 40 1 CCCTTCCCTTCTTTTCCTCTTAAGGTCGCTCTTCC 1 84 1 TCTTAAGGTCGCTCTTCCTTCCGGGTTTCCTTGGT 1 101 1 AGAGGTAGAGCACCTGCTTCCCAAGCAGGAGGTCG 2 66 1 CCAAGCAGGAGGTCGCCGGTTCGAGTCCCGTCGCC 2 86 1 GTTCGAGTCCCGTCGCCCGCTCCAAATTTTTGTAC 2 104 1 GAAAAAATAAGGCCTGCTCTTAAGGAACATCAAGG 3 55 1 ACAGCTGGAGCAACCTCCTTCAAAGGAAAGGTAAA 3 125 0 AAGGAGGTTGCTCCAGCTGTCCGGTTGTAGACATA 3 140 1 GGGGTGATGACCACTCCTGTTCTGGTCGTGGACGG 8 147 1 ACGTGTTTTACTTCACCGTCCACGACCAGAACAGG 8 162 0 AAACACGTGGGCACACCCATACCAGCACCTCAGAA 8 189 1 GGATTTCTCCTCCTTTTAGAACTTCTTATTT 11 23 0 * * *** *** ** MAP Score: 7.19107 Motif 7 TATTACTAAACCTTCCCCTTCTATAGAGTAAT 0 90 1 CTATTAACATCGTTCCCGTTTCAGGATATTCC 0 149 1 TTATCTCATACTTTTCCTTTTCGAGAGGTATT 0 182 1 CTCCATCTTCCACTCCTTATTCTTGAATGTAA 0 225 1 TCTTGAATGTAATTTCTTTTCATACATGTTTA 0 245 1 GCTTATTCTCAACTCCCTTTCCGTAAATTTCC 1 41 1 CAGGGAGCCACCCTTCCCTTCTTTTCCTCTTA 1 74 1 TTAACCTTTACTCTCCTCATTTTCCATTCCTC 1 142 1 TCCCGTCGCCCGCTCCAAATTTTTGTACAATT 2 111 1 GTTTTTATGGCTTTTCTTATTTACCCTCAATT 6 13 1 GGGTGATGACCACTCCTGTTCTGGTCGTGGAC 8 148 1 TATTATCTTCAATTTCACAAATTTAT 9 4 1 CTCCTTTTAGAACTTCTTATTTTAAAATATCT 11 13 0 * ***** **** MAP Score: 4.71211 Motif 8 GGAAGTGGCAAGAAAAATTAAGCAGGAGCTTG 0 14 0 GCTGAAATGAAGAAGGTTGAAGAAATTGAAAA 3 16 1 AAAAAGTGCTCGAAAAAATAAGGCCTGCTCTT 3 44 1 AAGTGGGTTAAGAAAGTAGAAATAACTCAGCA 3 217 1 ATAACTCAGCAGAAATTCGACATACAGCAATT 3 238 1 ATTCAATTTAAGAAAATGTTAAAAT 4 3 0 AAGTCGTTAGCGAAATCGTAAAAAGAAAAGGT 8 64 1 GGTATTGATGCGAAAGTTGAAAAAGTCGTGGA 8 93 1 TGGACATTCAGGAAGTTTTAAAGTACGGGGTG 8 121 1 CCAGCACCTCAGAAGATAGAAGAGCTTATCGG 8 210 1 AAAAGATATTTTAAAATAAGAAGTT 11 3 1 TTTTAAAATAAGAAGTTCTAAAAGGAGGAGAA 11 18 1 ***** * **** MAP Score: 4.44799 Motif 9 AGAACAAGCTCCTGCTTAATTTTTCTT 0 4 1 ATTGTGTAAATCTCCCCGTTTTTAAATTCTATT 0 61 1 TATTACTAAACCTTCCCCTTCTATAGAGTAATC 0 90 1 TTTATCTCATACTTTTCCTTTTCGAGAGGTATT 0 181 1 ATTTTTAATAACAGCTCCATCTTCCACTCCTTA 0 211 1 AGCTCCATCTTCCACTCCTTATTCTTGAATGTA 0 223 1 TTAACGTTAATCCAGGCGTGCTTATTCTCAACT 1 22 1 GTGCTTATTCTCAACTCCCTTTCCGTAAATTTC 1 39 1 CAGGGAGCCACCCTTCCCTTCTTTTCCTCTTAA 1 74 1 TAACCTTTACTCTCCTCATTTTCCATTCCTCCG 1 143 1 ACCTCTGAGCTACGCCCGCTTTTTATTATTAAA 2 39 0 GCTCAGAGGTAGAGCACCTGCTTCCCAAGCAGG 2 62 1 CTCGAACCGGCGACCTCCTGCTTGGGAAGCAGG 2 78 0 GGTTCGAGTCCCGTCGCCCGCTCCAAATTTTTG 2 103 1 ATTTCTTCAACCTTCTTCATTTCAGCCATACT 3 9 0 TTAAGGAACATCAAGGCGAGCTCAAGCTCGTAG 3 74 1 AACTTTCGCATCAATACCTTTTCTTTTTACGAT 8 78 0 GGAGTGGTCATCACCCCGTACTTTAAAACTTCC 8 131 0 CGGGGTGATGACCACTCCTGTTCTGGTCGTGGA 8 146 1 GGTATGGGTGTGCCCACGTGTTTTACTTCACCG 8 179 0 GGATTTCTCCTCCTTTTAGAACTTCTTA 11 26 0 ** * ******* MAP Score: 3.84599 Motif 10 TTCTATTACTAAACCTTCCCCTTCTATAGAGT 0 87 1 GTACTATTAACATCGTTCCCGTTTCAGGATAT 0 146 1 CCTTTATCTCATACTTTTCCTTTTCGAGAGGT 0 179 1 CCATCTTCCACTCCTTATTCTTGAATGTAATT 0 227 1 TTATTCTCAACTCCCTTTCCGTAAATTTCCAC 1 43 1 CACAGGGAGCCACCCTTCCCTTCTTTTCCTCT 1 72 1 CTTTACTCTCCTCATTTTCCATTCCTCCGTAG 1 147 1 TTAAGGAAGACACCGTTTACCTTTCCTTTGAA 3 110 1 TTTATCATAACACTCTTTCCGTAAATTTATGA 9 31 1 **** ***** * MAP Score: 3.41541