AlignACE 3.0 10/20/99 AlignACE2 -i AA/AA_operons022_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944235850 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 pkcI 300 protein kinase C inhibitor (HIT family) #1 ribA 215 GTP cyclohydrolase II #2 ribD2 139 riboflavin specific deaminase #3 nifU 186 NifU protein #4 aq_900 119 putative protein #5 aroE 266 shikimate 5-dehydrogenase #6 aq_1133 68 putative protein #7 proB 29 glutamate 5-kinase #8 nuoH2 75 NADH dehydrogenase I chain H #9 arsR 25 transcriptional regulator (ArsR family) #10 aq_1388 242 hypothetical protein #11 ctrA2 56 cation transporting ATPase (E1-E2 family) #12 mutT 28 8-OXO-dGTPase domain (mutT domain) #13 metE 44 tetrahydropteroyltriglutamate methyltransferase Motif 1 AAGAAAAATTAAGCAGGAGCTTGTTCT 0 7 0 TACTCTATAGAAGGGGAAGGTTTAGTAATA 0 90 0 ACCTCTCGAAAAGGAAAAGTATGAGATAAA 0 181 0 GAAGCAAAATCTTTAACGTTA 1 1 1 AATTTACGGAAAGGGAGTTGAGAATAAGCA 1 40 0 AGAGGAAAAGAAGGGAAGGGTGGCTCCCTG 1 74 0 GGAAACCCGGAAGGAAGAGCGACCTTAAGA 1 101 0 ATGGTGTTTTAAGGAGGTTGAT 2 2 0 CCTGCTTGGGAAGCAGGTGCTCTACCTCTG 2 65 0 CCTGCTTCCCAAGCAGGAGGTCGCCGGTTC 2 78 1 AAGCAAAATTGTACAAAAAT 2 129 0 ATAAACTATCAAGGAGGTGCTAAA 3 172 1 CAAACAGATAAAGGAAATGGAAATAGGCCA 4 79 1 CGTAGATATTAAGGAAGACACCGTTTACCT 5 102 1 ACCTCCTTCAAAGGAAAGGTAAACGGTGTC 5 118 0 CTTTCCTTTGAAGGAGGTTGCTCCAGCTGT 5 130 1 TACAGTAATTAAGGGAAACGTCAAGTGGGT 5 195 1 TAAGCGAATTGCTGTATGTCG 5 255 0 GAATTAACACAAGGAGAACTTTACATATTT 6 44 1 GAAATCGTAAAAAGAAAAGGTATTGATGCG 10 75 1 GAAGTTCTAAAAGGAGGAGAAATCC 13 29 1 ********** MAP Score: 19.6134 Motif 2 AGAACAAGCTCCTGCTTAATTTTTCTT 0 6 1 TTTTAATAACAGCTCCATCTTCCACTCCTTA 0 213 1 ATCAACCTCCTTAAAACACCATTAT 2 4 1 TCAGAGGTAGAGCACCTGCTTCCCAAGCAGG 2 64 1 CGAACCGGCGACCTCCTGCTTGGGAAGCAGG 2 78 0 CTCAGCACCTTGATAAGTGTGCCC 3 3 1 TTTAGCACCTCCTTGATAGTTTATTAC 3 169 0 AATTTCTTCAACCTTCTTCATTTCAGCCATA 5 12 0 GGCGAGCTCAAGCTCGTAGATATTAAGGAAG 5 88 1 AGCTGGAGCAACCTCCTTCAAAGGAAAGGTA 5 127 0 TCCCTCAAAAACCTCGTTGATACAGTAATTA 5 175 1 AGTGGTCATCACCCCGTACTTTAAAACTTCC 10 131 0 ******* *** MAP Score: 13.4918 Motif 3 CTATTACTAAACCTTCCCCTTCTATAGAGTA 0 89 1 ACTATTAACATCGTTCCCGTTTCAGGATATT 0 148 1 TTTATCTCATACTTTTCCTTTTCGAGAGGTA 0 181 1 GCTCCATCTTCCACTCCTTATTCTTGAATGT 0 224 1 TGCTTATTCTCAACTCCCTTTCCGTAAATTT 1 40 1 ACAGGGAGCCACCCTTCCCTTCTTTTCCTCT 1 73 1 CCCTTCCCTTCTTTTCCTCTTAAGGTCGCTC 1 84 1 CTTAACCTTTACTCTCCTCATTTTCCATTCC 1 141 1 ACCTTTTGCCCCGTTCCGGTTGCGGAAACCG 4 47 1 TGGCCTATTTCCATTTCCTTTATCTGTTTGG 4 78 0 GACACCGTTTACCTTTCCTTTGAAGGAGGTT 5 118 1 AACCCACTTGACGTTTCCCTTAATTACTGTA 5 195 0 CGCATCAATACCTTTTCTTTTTACGATTTCG 10 74 0 GGGGTGATGACCACTCCTGTTCTGGTCGTGG 10 147 1 GGATTTCTCCTCCTTTTAGAACTTCTT 13 27 0 ** ******** MAP Score: 12.0508 Motif 4 CCAGGCGTGCTTATTCTCAACTCCCTTTCCGT 1 33 1 CTCAACTCCCTTTCCGTAAATTTCCACAGGGA 1 48 1 TACATAAGTTTTTCTTTAAATTTATTCCT 1 196 1 CGCCCGCTTTTTATTATTAAATTTTATAATGG 2 28 0 TATAAATAAATTACTTTGATTTCAGTCATAAC 3 104 1 CCTATTTCCATTTCCTTTATCTGTTTGGCGGT 4 74 0 CCACTTGACGTTTCCCTTAATTACTGTATCAA 5 191 0 ATTTTAACATTTTCTTAAATTGAATTTAAAT 6 9 1 CTTTTCTTATTTACCCTCAATTAAATTTTTGT 8 23 1 TCAATTAAATTTTTGTTAAACTTAAAAATCAC 8 39 1 AAATGAAATTTTATATAAATTTTTC 9 4 0 TATTATCTTCAATTTCACAAATTT 11 2 1 GGAAAGAGTGTTATGATAAATTTGTGAAATTG 11 19 0 CATAACACTCTTTCCGTAAATTTATGAAGT 11 36 1 TTAGAACTTCTTATTTTAAAATATCTTTT 13 7 0 ***** * **** MAP Score: 11.8889 Motif 5 TTTAGTAATAGAATTTAAAAACGGGGAGATTTACACAAT 0 61 0 TCAAGAATAAGGAGTGGAAGATGGAGCTGTTATTAAAAA 0 212 0 CCCTTTCCGTAAATTTCCACAGGGAGCCACCCTTCCCTT 1 55 1 GATCTACGGAGGAATGGAAAATGAGGAGAGTAAAGGTTA 1 143 0 AGTATGGCTGAAATGAAGAAGGTTGAAGAAATTGAAAA 5 9 1 GAAGGTTGAAGAAATTGAAAAAGTGCTCGAAAAAATAAG 5 27 1 TAACTCAGCAGAAATTCGACATACAGCAATTCGCTTA 5 239 1 TTTAAATCTTGAATTAACACAAGGAGAACTTTACATATT 6 34 1 TATTGATGCGAAAGTTGAAAAAGTCGTGGACATTCAGGA 10 95 1 GGACATTCAGGAAGTTTTAAAGTACGGGGTGATGACCAC 10 122 1 CGTGGACGGTGAAGTAAAACACGTGGGCACACCCATACC 10 173 1 TTTAAAATAAGAAGTTCTAAAAGGAGGAGAAATCC 13 19 1 *** * *** * * * MAP Score: 9.47105 Motif 6 ATTTTTCTTGCCACTTCCGGATCATAAACGTCT 0 28 1 ACTAAACCTTCCCCTTCTATAGAGTAATCTGGC 0 94 1 AACATCGTTCCCGTTTCAGGATATTCCTTTATC 0 154 1 TCATACTTTTCCTTTTCGAGAGGTATTTTTAAT 0 187 1 ATTCTCAACTCCCTTTCCGTAAATTTCCACAGG 1 45 1 CCCTTCTTTTCCTCTTAAGGTCGCTCTTCCTTC 1 89 1 CAGGAGGTCGCCGGTTCGAGTCCCGTCGCCCGC 2 91 1 CCCGGGGTCGCGGGTTCAAGTCCCGCCGGGCAC 3 28 0 AACCTTTTGCCCCGTTCCGGTTGCGGAAACCGC 4 46 1 CCGCTATCAGTTCCAGAACCTGGCCTATT 4 100 0 CTCCAGCTGTCCGGTTGTAGACATATCCCTCAA 5 150 1 AACTTAAAAATCACTTCGGGAGGAAGGT 8 57 1 GATGACCACTCCTGTTCTGGTCGTGGACGGTGA 10 152 1 ** **** *** * MAP Score: 9.30656 Motif 7 AGACGTTTATGATCCGGAAGTGGCAAGAAAAATTAAGCAGGAG 0 18 0 TATTAACATCGTTCCCGTTTCAGGATATTCCTTTATCTCATAC 0 150 1 CCGTAAATTTCCACAGGGAGCCACCCTTCCCTTCTTTTCCTCT 1 61 1 TTACCAAGGAAACCCGGAAGGAAGAGCGACCTTAAGAGGAAAA 1 95 0 AAAATTTGGAGCGGGCGACGGGACTCGAACCGGCGACCTCCTG 2 91 0 CTTGATAAGTGTGCCCGGCGGGACTTGAACCCGCGACCCCGGG 3 18 1 TTGAACCCGCGACCCCGGGGTCCGGAGCCCCGTGCTCTGTCCA 3 42 1 ATTTATAATAGTGCCCGTAGCTCAGGTGGACAGAGCACGGGGC 3 68 0 GGCTGACGTAGTTCACGACGTTACGGGAACCTTTTGCCCCGTT 4 19 1 CTTTTGCCCCGTTCCGGTTGCGGAAACCGCCAAACAGATAAAG 4 49 1 TTGCTCCAGCTGTCCGGTTGTAGACATATCCCTCAAAAACCTC 5 147 1 AAGTTTTAAAGTACGGGGTGATGACCACTCCTGTTCTGGTCGT 10 133 1 TGTTCTGGTCGTGGACGGTGAAGTAAAACACGTGGGCACACCC 10 164 1 * **** * * ** * MAP Score: 8.11429 Motif 8 AGTGGAAGATGGAGCTGTTATTAAAAATACCTCTCGAAAAG 0 198 0 TTACGGAAAGGGAGTTGAGAATAAGCACGCCTGGATTAACG 1 26 0 ATAATAAAAAGCGGGCGTAGCTCAGAGGTAGAGCACCTGCT 2 43 1 TCCCAAGCAGGAGGTCGCCGGTTCGAGTCCCGTCGCCCGCT 2 84 1 CTCAGCACCTTGATAAGTGTGCCCGGCGGGACT 3 2 1 TCCGGACCCCGGGGTCGCGGGTTCAAGTCCCGCCGGGCACA 3 27 0 CAGGTGGACAGAGCACGGGGCTCCGGACCCCGGGGTCGCGG 3 48 0 ATTTATAATAGTGCCCGTAGCTCAGGTGGACAGAGCACGGG 3 70 0 GGCTGACGTAGTTCACGACGTTACGGGAACCTTTTGCCCCG 4 19 1 AACCTTTTGCCCCGTTCCGGTTGCGGAAACCGCCAAACAGA 4 46 1 AGATATTAAGGAAGACACCGTTTACCTTTCCTTTGAAGGAG 5 105 1 AAGTTTTAAAGTACGGGGTGATGACCACTCCTGTTCTGGTC 10 133 1 GTATGGGTGTGCCCACGTGTTTTACTTCACCGTCCACGACC 10 170 0 * * ** * * ** ** MAP Score: 8.08561 Motif 9 TTCTATTACTAAACCTTCCCCTTCTATAGAGT 0 87 1 GTACTATTAACATCGTTCCCGTTTCAGGATAT 0 146 1 GTTTCAGGATATTCCTTTATCTCATACTTTTC 0 166 1 TTATTCTCAACTCCCTTTCCGTAAATTTCCAC 1 43 1 CCACAGGGAGCCACCCTTCCCTTCTTTTCCTC 1 71 1 GCTCTTCCTTCCGGGTTTCCTTGGTAAAAGCT 1 111 1 CATTCATTTGCAAGGTTTACGTTATGACTGAA 3 124 0 GAACGGGGCAAAAGGTTCCCGTAACGTCGTGA 4 31 0 GAACCTTTTGCCCCGTTCCGGTTGCGGAAACC 4 45 1 TTAAGGAAGACACCGTTTACCTTTCCTTTGAA 5 110 1 TTAACCCACTTGACGTTTCCCTTAATTACTGT 5 196 0 TTTATCATAACACTCTTTCCGTAAATTTATGA 11 31 1 * ********* MAP Score: 4.70597 Motif 10 TCCCAAGCAGGAGGTCGCCGGTTCGAGTCCCGTCGCCCGCT 2 84 1 CTTGATAAGTGTGCCCGGCGGGACTTGAACCCGCGACCCCG 3 18 1 ACTTGAACCCGCGACCCCGGGGTCCGGAGCCCCGTGCTCTG 3 40 1 GGCTGACGTAGTTCACGACGTTACGGGAACCTTTTGCCCCG 4 19 1 TAAAACACGTGGGCACACCCATACCAGCACCTCAGAAGATA 10 187 1 * * * ** * * * ** MAP Score: 2.69855 Motif 11 ACGACGTTACGGGAACCTTTTGCCCCGTTCCGGTTGCGGAAAC 4 33 1 CCGCGACCCCGGGGTCCGGAGCCCCGTGCTCTGTCCACCTGAG 3 48 1 CCTCCTGCTTGGGAAGCAGGTGCTCTACCTCTGAGCTACGCCC 2 55 0 AGTGTGCCCGGCGGGACTTGAACCCGCGACCCCGGGGTCCGGA 3 25 1 TTAAAGTACGGGGTGATGACCACTCCTGTTCTGGTCGTGGACG 10 138 1 GCAGGAGGTCGCCGGTTCGAGTCCCGTCGCCCGCTCCAAATTT 2 90 1 CGTTAATCCAGGCGTGCTTATTCTCAACTCCCTTTCCGTAAAT 1 26 1 TCCACAGGGAGCCACCCTTCCCTTCTTTTCCTCTTAAGGTCGC 1 70 1 *** * *** ** * MAP Score: 1.96999 Motif 12 AGTGGCAAGAAAAATTAAGCAGGAGCTTGTT 0 12 0 TTTAGTAATAGAATTTAAAAACGGGGAGATT 0 69 0 CTCCCTGTGGAAATTTACGGAAAGGGAGTTG 1 50 0 ATTTAAAGAAAAACTTATGTATAATAAAGTT 1 186 0 AGGAATAAATTTAAAGAAAAACTTATG 1 198 0 CGCCCGCTCCAAATTTTTGTACAATTTTGCT 2 117 1 GCAAATGAATGAATTTATAATTCAGTAATAA 3 145 1 GAAGGTTGAAGAAATTGAAAAAGTGCTCGAA 5 27 1 GATTTAAATTCAATTTAAGAAAATGTTAAAA 6 11 0 AATTTTTGTTAAACTTAAAAATCACTTCGGG 8 46 1 GAAAAATTTATATAAAATTTCATT 9 3 1 AGGAAATTAAGATTCTCAGCGGG 10 2 1 GTGTTATGATAAATTTGTGAAATTGAAGATA 11 13 0 CTCTTTCCGTAAATTTATGAAGT 11 43 1 ********* * MAP Score: 1.7792 Motif 13 GATAAGTGTGCCCGGCGGGACTTGAACCCGC 3 21 1 AATTAAGATTCTCAGCGGGACAAATTGTCAG 10 14 1 GAACCCGCGACCCCGGGGTCCGGAGCCCCGT 3 44 1 GTGCCCGTAGCTCAGGTGGACAGAGCACGGG 3 70 0 CGTAAATTTCCACAGGGAGCCACCCTTCCCT 1 62 1 TGAAGTAAAACACGTGGGCACACCCATACCA 10 182 1 ACTTAAAAATCACTTCGGGAGGAAGGT 8 58 1 GTGGACAGAGCACGGGGCTCCGGACCCCGGG 3 55 0 *** ******* MAP Score: 1.39641 Motif 14 AGAACAAGCTCCTGCTTAATTTT 0 3 1 TGTGTAAATCTCCCCGTTTTTAAATTCTAT 0 63 1 TTACTAAACCTTCCCCTTCTATAGAGTAAT 0 92 1 TTTTAATAACAGCTCCATCTTCCACTCCTT 0 213 1 ATCAACCTCCTTAAAACACCA 2 1 1 TCTGAGCTACGCCCGCTTTTTATTATTAAA 2 39 0 TCAGAGGTAGAGCACCTGCTTCCCAAGCAG 2 64 1 CGAACCGGCGACCTCCTGCTTGGGAAGCAG 2 79 0 GAGTCCCGTCGCCCGCTCCAAATTTTTGTA 2 108 1 GGCACACTTATCAAGGTGCTGAG 3 3 0 GGGGTCCGGAGCCCCGTGCTCTGTCCACCT 3 58 1 TTTAGCACCTCCTTGATAGTTTA 3 173 0 GGAACCTTTTGCCCCGTTCCGGTTGCGGAA 4 44 1 ATGGAAATAGGCCAGGTTCTGGAACTGATA 4 95 1 TTCAATTTCTTCAACCTTCTTCATTTCAGC 5 16 0 AAAAAATAAGGCCTGCTCTTAAGGAACATC 5 56 1 GACAGCTGGAGCAACCTCCTTCAAAGGAAA 5 131 0 AGGAGGTTGCTCCAGCTGTCCGGTTGTAGA 5 141 1 AGTGGTCATCACCCCGTACTTTAAAACTTC 10 132 0 GTGTTTTACTTCACCGTCCACGACCAGAAC 10 165 0 GGATTTCTCCTCCTTTTAGAACTTCTT 13 27 0 ********** MAP Score: 0.345784 Motif 15 TAATTTTTCTTGCCACTTCCGGATCATAAACGTCTATT 0 26 1 ATTACTAAACCTTCCCCTTCTATAGAGTAATCTGGCTC 0 91 1 ATTAACATCGTTCCCGTTTCAGGATATTCCTTTATCTC 0 151 1 ACAGCTCCATCTTCCACTCCTTATTCTTGAATGTAATT 0 221 1 GCGTGCTTATTCTCAACTCCCTTTCCGTAAATTTCCAC 1 37 1 CCACAGGGAGCCACCCTTCCCTTCTTTTCCTCTTAAGG 1 71 1 CCTCTTAAGGTCGCTCTTCCTTCCGGGTTTCCTTGGTA 1 99 1 CTCTCCTCATTTTCCATTCCTCCGTAGATCAGAAAACT 1 152 1 CGAGTCCCGTCGCCCGCTCCAAATTTTTGTACAATTTT 2 107 1 GGAACCTTTTGCCCCGTTCCGGTTGCGGAAACCGCCAA 4 44 1 AAGACACCGTTTACCTTTCCTTTGAAGGAGGTTGCTCC 5 116 1 TACGGGGTGATGACCACTCCTGTTCTGGTCGTGGACGG 10 144 1 TATTATCTTCAATTTCACAAATTTATCATAACAC 11 6 1 ** ** **** ** MAP Score: 0.0942099