AlignACE 3.0 10/20/99
AlignACE2 -i AA/AA_operons023_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944235882
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	aq_374	77	putative protein
#1	aq_381	32	putative protein
#2	aq_383	241	putative protein
#3	aq_387	300	putative protein

Motif 1
ACTTACTTGTGAGGGGGTGAAAAATTAAGGA	0	46	1
GTTTATAGATGAGCAGGAAAAGGAAAGCCGG	2	24	1
AAAGTACAGCGTGCAGGAAGAAGATATTTGA	2	202	1
AATGTACCGTGTGGAGTTGAAACAGGACTTA	3	47	1
CGCATATCGGGTGCAGTTAAACAGGTTCCTA	3	81	1
ATGTACCGTAGTGGAGTTAAAACAACGAGTT	3	112	1
ATATACCGTTGTGGAATTGCAGCAATACATC	3	180	1
CTTAAAGTAGGTGGAGGGATATGGAAATAAA	3	258	1
          ********* *
MAP Score: 10.5941

Motif 2
CTCCTATATATTTCTACAGATTGTT     	1	5	0
GGCTTTCCTTTTCCTGCTCATCTATAAACA	2	23	0
GAAGCAGGAGTTCGTCAGGACAACTATTTC	2	64	1
ACTATTTCCCTTCCTAAAGATTTATGGGAA	2	86	1
GGAGCTCTATTTTCTGAGCTATGAGTTTCC	2	156	0
CGCTGTACTTTTTCTGAAGTTTTTTAAGGA	2	183	0
AAATATCTTCTTCCTGCACGCTGTACTTTT	2	201	0
CCGCCGGGATTTCGTCCTCATAAGTTCCTA	3	18	1
TCCTCATAAGTTCCTAATGTACCGTGTGGA	3	32	1
GTTAAACAGGTTCCTAATGTACCGTAGTGG	3	96	1
ATAGTCTGAGTTCCTAATATACCGTTGTGG	3	164	1
TGAGATTAGTTTCGTAATCAGATACGAGTA	3	215	1
          **********
MAP Score: 7.16555

Motif 3
TCATAAGTTCCTAATGTACCGTGTGGAGTTG	3	35	1
AAACAGGTTCCTAATGTACCGTAGTGGAGTT	3	99	1
GTCTGAGTTCCTAATATACCGTTGTGGAATT	3	167	1
GATTACGAAACTAATCTCACGATGATGTATT	3	203	0
          ***** *****
MAP Score: 7.00613

Motif 4
TATAGATGAGCAGGAAAAGGAAAGCCGGAAG	2	27	1
GGAAAGCCGGAAGGAAAAAGAAGCAGGAGTT	2	45	1
AGGAGTTCGTCAGGACAACTATTTCCCTTCC	2	69	1
ACTCATAGCTCAGAAAATAGAGCTCCTTAAA	2	160	1
TAAAAAACTTCAGAAAAAGTACAGCGTGCAG	2	187	1
GTACAGCGTGCAGGAAGAAGATATTTGAATA	2	205	1
          ******** **
MAP Score: 6.44995

Motif 5
GTATAACGCCCCGCGGGGTCCGTTTCTGACATCA	0	14	0
AAATAGTTGTCCTGACGAACTCCTGCTTCTTTTT	2	59	0
TATGAGTTTCCCTAAGGGTGTTTTCTTTTTAACG	2	133	0
TCTTCTTCCTGCACGCTGTACTTTTTCTGAAGTT	2	192	0
AGGACGAAATCCCGGCGGACTACTTA        	3	2	0
TGTTTCAACTCCACACGGTACATTAGGAACTTAT	3	37	0
GTTTTAACTCCACTACGGTACATTAGGAACCTGT	3	101	0
GCTGCAATTCCACAACGGTATATTAGGAACTCAG	3	169	0
          **  ***** * **
MAP Score: 4.21652

Motif 6
AGAAACGGACCCCGCGGGGCGTTATACTTACTT	0	21	1
CTTTTTCCTTCCGGCTTTCCTTTTCCTGCTCAT	2	32	0
TTCCTAATGTACCGTGTGGAGTTGAAACAGGAC	3	42	1
TAGGACGCATATCGGGTGCAGTTAAACAGGTTC	3	76	1
TCCTAATGTACCGTAGTGGAGTTAAAACAACGA	3	107	1
GAGTTAAAACAACGAGTTGTTTTGTGTACTACA	3	125	1
TCCTAATATACCGTTGTGGAATTGCAGCAATAC	3	175	1
          **** ****  **
MAP Score: 0.818283