AlignACE 3.0 10/20/99
AlignACE2 -i AA/AA_operons023_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944235892
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	aq_374	77	putative protein
#1	aq_381	32	putative protein
#2	aq_383	241	putative protein
#3	aq_387	300	putative protein

Motif 1
ACTTACTTGTGAGGGGGTGAAAAATTAAGGAGGTTTT	0	46	1
       AACAATCTGTAGAAATATATAGGAGGATAA	1	3	1
TGTGTTTATAGATGAGCAGGAAAAGGAAAGCCGGAAG	2	21	1
GGAAAAGGAAAGCCGGAAGGAAAAAGAAGCAGGAGTT	2	39	1
TCTTCCCATAAATCTTTAGGAAGGGAAATAGTTGTCC	2	81	0
AGGGAAACTCATAGCTCAGAAAATAGAGCTCCTTAAA	2	154	1
GCTCCTTAAAAAACTTCAGAAAAAGTACAGCGTGCAG	2	181	1
GAAAAAGTACAGCGTGCAGGAAGAAGATATTTGAATA	2	199	1
ACTCCACACGGTACATTAGGAACTTATGAGGACGAAA	3	27	0
AATGTACCGTGTGGAGTTGAAACAGGACTTAGGACGC	3	47	1
CTCCACTACGGTACATTAGGAACCTGTTTAACTGCAC	3	91	0
TTCCTAATATACCGTTGTGGAATTGCAGCAATACATC	3	174	1
AAGTAGGTGGAGGGATATGGAAATAAAAGGGTCTAGG	3	262	1
          *  * * *****  * *
MAP Score: 13.2495

Motif 2
ACTTACTTGTGAGGGGGTGAAAAATTAAGGA	0	46	1
GTTTATAGATGAGCAGGAAAAGGAAAGCCGG	2	24	1
AAAGTACAGCGTGCAGGAAGAAGATATTTGA	2	202	1
AATGTACCGTGTGGAGTTGAAACAGGACTTA	3	47	1
CGCATATCGGGTGCAGTTAAACAGGTTCCTA	3	81	1
ATGTACCGTAGTGGAGTTAAAACAACGAGTT	3	112	1
ATATACCGTTGTGGAATTGCAGCAATACATC	3	180	1
CTTAAAGTAGGTGGAGGGATATGGAAATAAA	3	258	1
          ********* *
MAP Score: 10.5941

Motif 3
TGATGTCAGAAACGGACCCCGCGGGGCGTTATACTT	0	14	1
GAGCAGGAAAAGGAAAGCCGGAAGGAAAAAGAAGCA	2	34	1
CGTTAAAAAGAAAACACCCTTAGGGAAACTCATAGC	2	133	1
CTTCAGAAAAAGTACAGCGTGCAGGAAGAAGATATT	2	194	1
ACTTATGAGGACGAAATCCCGGCGGACTACTTA   	3	7	0
ATAAGTTCCTAATGTACCGTGTGGAGTTGAAACAGG	3	37	1
ACAGGTTCCTAATGTACCGTAGTGGAGTTAAAACAA	3	101	1
CTGAGTTCCTAATATACCGTTGTGGAATTGCAGCAA	3	169	1
GGATATGGAAATAAAAGGGTCTAGGGAGGATTTTAG	3	274	1
          *  * *****   ***
MAP Score: 9.40446

Motif 4
AGAAGCAGGAGTTCGTCAGGACAACTATTT	2	63	1
AACTATTTCCCTTCCTAAAGATTTATGGGA	2	85	1
GCCGGGATTTCGTCCTCATAAGTTCCTAAT	3	20	1
GTCCTCATAAGTTCCTAATGTACCGTGTGG	3	31	1
ACCCGATATGCGTCCTAAGTCCTGTTTCAA	3	63	0
AGTTAAACAGGTTCCTAATGTACCGTAGTG	3	95	1
GATAGTCTGAGTTCCTAATATACCGTTGTG	3	163	1
          **********
MAP Score: 6.50406

Motif 5
GATGTCAGAAACGGACCCCGCGGGGCGTTATACTTACTTGTG	0	15	1
GAGCAGGAAAAGGAAAGCCGGAAGGAAAAAGAAGCAGGAGTT	2	34	1
CGTTAAAAAGAAAACACCCTTAGGGAAACTCATAGCTCAGAA	2	133	1
CTTCAGAAAAAGTACAGCGTGCAGGAAGAAGATATTTGAATA	2	194	1
CATAAGTTCCTAATGTACCGTGTGGAGTTGAAACAGGACTTA	3	36	1
AACCTGTTTAACTGCACCCGATATGCGTCCTAAGTCCTGTTT	3	66	0
ACAGGTTCCTAATGTACCGTAGTGGAGTTAAAACAACGAGTT	3	101	1
CTGAGTTCCTAATATACCGTTGTGGAATTGCAGCAATACATC	3	169	1
          *     ****   ****    *
MAP Score: 4.37486

Motif 6
TGATGTCAGAAACGGACCCCGCGGGGCGTTATACT	0	14	1
AGCAGGAAAAGGAAAGCCGGAAGGAAAAAGAAGCA	2	35	1
AAAAAGAAGCAGGAGTTCGTCAGGACAACTATTTC	2	59	1
CGTTAAAAAGAAAACACCCTTAGGGAAACTCATAG	2	133	1
GAAAAAGTACAGCGTGCAGGAAGAAGATATTTGAA	2	199	1
        TAAGTAGTCCGCCGGGATTTCGTCCTC	3	2	1
ATAAGTTCCTAATGTACCGTGTGGAGTTGAAACAG	3	37	1
GAGTTGAAACAGGACTTAGGACGCATATCGGGTGC	3	60	1
ACAGGTTCCTAATGTACCGTAGTGGAGTTAAAACA	3	101	1
CTGAGTTCCTAATATACCGTTGTGGAATTGCAGCA	3	169	1
TGGAAATAAAAGGGTCTAGGGAGGATTTTAG    	3	279	1
          ** *  ****  ***
MAP Score: 2.81052

Motif 7
AAGTATAACGCCCCGCGGGGTCCGTTTCTGACATCAAT	0	12	0
  CTTTAAAACCTCCTTAATTTTTCACCCCCTCACAAG	0	51	0
CTTCTTTTTCCTTCCGGCTTTCCTTTTCCTGCTCATCT	2	30	0
TTAACGCTTTCTATCCTAAGTTCTTCCCATAAATCTTT	2	101	0
      CCTCCATCCCTCAATTATTCAAATATCTTCTT	2	219	0
  TAAGTAGTCCGCCGGGATTTCGTCCTCATAAGTTCC	3	8	1
TTTCAACTCCACACGGTACATTAGGAACTTATGAGGAC	3	31	0
TTTAACTCCACTACGGTACATTAGGAACCTGTTTAACT	3	95	0
GGAGTTAAAACAACGAGTTGTTTTGTGTACTACATGGA	3	124	1
TGCAATTCCACAACGGTATATTAGGAACTCAGACTATC	3	163	0
AGCAATACATCATCGTGAGATTAGTTTCGTAATCAGAT	3	200	1
          *  ** *   *****  *
MAP Score: 1.13969