AlignACE 3.0 10/20/99 AlignACE2 -i AA/AA_operons030_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944236132 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 aq_389 300 hypothetical protein #1 aq_391 126 putative protein #2 aq_392 58 putative protein #3 aq_394 147 putative protein #4 hdrA 57 heterodisulfide reductase subunit A #5 aq_401 74 putative protein #6 aq_402 27 putative protein #7 aq_943 300 putative protein #8 gcsH3 72 glycine cleavage system protein H #9 lysR2 50 transcriptional regulator (LysR family) #10 fdoG 212 formate dehydrogenase alpha subunit #11 gcsH1 98 glycine cleavage system protein H #12 aq_1104 45 putative protein #13 gcsH4 269 glycine cleavage system protein H #14 gcvT 144 aminomethyltransferase (glycine cleavage system T protein) #15 fucA1 48 fuculose-1-phosphate aldolase #16 putative 27 putative protein Motif 1 TAAGGAAAATTAAATTTAAGGAGGTTGTGTGATG 0 27 1 TGCCCGTGTTAAAGACCAAGAAGGCTCTTGAAGA 0 113 1 CGTAGAGATGACAGAAGAAGGAGGTAAGTACATC 0 240 1 ATAAGGAAAAAAGGATAAGGGAGGGTAAAA 0 280 1 AAAGGGGGCAAAAAAGAAAGAAGGAAAA 1 4 0 CTTAAAATTAAAACTTTAAGGAGGTGTTGTT 2 37 1 AAAAATAAAAAAAATTAATGGAGATATAAATAGA 5 39 1 TTTCAATAAATTTAAGGGAGGTGTGCT 6 7 1 TCAAGGGTAAAAATTTTATAAAGGCATACTCAAT 7 22 1 GAAATGCCCTAAGTAAATAAGAGGTTTTTCTTTC 7 226 1 GGAATAAACTAAAAACTAAGAATGCTTAAAGGAG 10 188 1 TTTATTAAAAAAAGAAATAGAAGAGATTCTAAAA 11 28 0 GAAGCTCGGTAAAGAAAAGGAAGAGTTTGAGTTT 13 57 1 CGTTAACGGCAAACTTAACGGAGTTCAATATATT 13 148 0 GCGGTGGTTAAAACTTCTTGGAGGTGGAAGG 13 248 1 GAAAATCTTTAAAGGTTTGTAAGGA 15 1 1 *** * * ***** MAP Score: 18.3285 Motif 2 AAATATAACCTAATATTAAGGAAAATTAAATTTA 0 11 1 TAAGGAAAATTAAATTTAAGGAGGTTGTGTGATG 0 27 1 CGTAGAGATGACAGAAGAAGGAGGTAAGTACATC 0 240 1 AAGTACATCTACTACATAAGGAAAAAAGGATAAG 0 265 1 CATAAGGAAAAAAGGATAAGGGAGGGTAAAA 0 279 1 TAAAGGGGGCAAAAAAGAAAGAAGGAAAA 1 5 0 ATAAAAATATTCTTATAAAGGGGGCAAAAAAGAA 1 20 0 CTTAAAATTAAAACTTTAAGGAGGTGTTGTT 2 37 1 CCTAAAAGGATTTATAGAAGGGGGCAAGAGCCCC 4 23 0 AGATATAAATAGAGGTAAAGGAAA 5 60 1 TTTCAATAAATTTAAGGGAGGTGTGCT 6 6 1 TAAGTTTATGAAATGAGAAAGAAAAACCTCTTAT 7 242 0 AGGAAATATTAATTATAAGTGAGTGTTTATTTA 7 277 0 TATATCCTTATAATGATAAGTAAGTGTTGATTTA 8 18 1 TCATTGAATAATTAAATAAATAAGTTATGTGATA 10 24 1 ATGTGATATTTGAATATAAGGAATTTATTAACAT 10 50 1 TCAAAACAATATTTTAAAAATAGGCATATGAACA 10 113 0 AATTTTTTCATGATTTGAAAGGGGAATAAACTAA 10 166 1 AAAAACTAAGAATGCTTAAAGGAG 10 198 1 ACCCGTTTTTATTAAAAAAAGAAATAGAAGAGAT 11 35 0 TTAATACTTAACTCTACAAAGAGGTAAAAGCC 12 8 0 AGAAGCTCGGTAAAGAAAAGGAAGAGTTTGAGTT 13 56 1 GTTTATGGACATAGTAAAGGGGAGTTTGCATAAA 14 23 0 CACCTCAATAATAGAAGAAGTAAGGGCTGTAAGG 14 109 1 * * * ******* MAP Score: 18.2634 Motif 3 TTAACTGTCCTCTGCCCGTGTTAAAGACCAAGAAG 0 101 1 CCCTTATCCTTTTTTCCTTATGTAGTAGATGTACT 0 266 0 TTCTTTCTTTTTTGCCCCCTTTATAAGAATATTTT 1 16 1 AATATTTTTATATGACTATAAAAAAATTTTTTTGA 1 43 1 GCTGCTGGTCTTTGTCCGTTGTAAACTTCGGGGTC 3 84 0 ACATGGGGGCTCTTGCCCCCTTCTATAAATCCTTT 4 18 1 TATTTTCCCTCCTAAAAGGATTTATAG 4 40 0 TGTCTTTTGCCCGCCTTTTGGCGGGCTTTA 5 5 1 CAAAATTGAGTATGCCTTTATAAAATTTTTACCCT 7 25 0 TTATTAGACTTCTGACCTTAATGAAACGAATGTTA 7 83 0 ACTATAATAATGTGGCTCTCTGCAATGATAACAAA 7 184 1 ATATTAATATTATGACCTTTATCAAAGTAAATCAA 8 44 0 AAAATGTTCATATGCCTATTTTTAAAATATTGTTT 10 109 1 TTTTGAAAATTTTGTCTTTTTTTTAAATTTTTTCA 10 141 1 GTTTTTAGTTTATTCCCCTTTCAAATCATGAAAAA 10 169 0 GAATCTCTTCTATTTCTTTTTTTAATAAAAACGGG 11 33 1 GGCTTTTACCTCTTTGTAGAGTTAAGTA 12 3 1 * ** ** * ** ** MAP Score: 11.2314 Motif 4 TGCCCCCTTTATAAGAATATTTTTATATGACTA 1 28 1 TTATATGACTATAAAAAAATTTTTTTGATTTCC 1 50 1 AATTAAAACTTTAAGGAGGTGTTGTT 2 42 1 CAGAAGTCTAATAAGTTATTTATAAAGCGTTTT 7 104 1 CCCTAAGTAAATAAGAGGTTTTTCTTTCTCATT 7 232 1 AATATTAATTATAAGTGAGTGTTTATTTATTAA 7 273 0 CCTTATAATGATAAGTAAGTGTTGATTTACTTT 8 23 1 GAATAATTAAATAAATAAGTTATGTGATATTTG 10 29 1 ATATTTGAATATAAGGAATTTATTAACATGCAA 10 55 1 TTGATACACAATAAAAAAATGTTCATATGCCTA 10 94 1 ATGCCTATTTTTAAAATATTGTTTTGAAAATTT 10 120 1 GATGGTGGAGATAAGGTACTTTTCCATTCTCAG 13 21 1 ACAAATTAAGATAAAATACTTCTTCTA 16 4 0 ***** * **** MAP Score: 11.1566 Motif 5 TAAATATAACCTAATATTAAGGAAAATTAAAT 0 9 1 ATTAAGGAAAATTAAATTTAAGGAGGTTGTGTG 0 25 1 GTGCCCCGCTCTTAAAATTAAAACTTTAAGGAG 2 27 1 TTTAAAAATAAAAAAAATTAATGGAGATATAAA 5 36 1 TTTCAATAAATTTAAGGGAGGTGTGCT 6 4 1 TTTCTCATTTCATAAACTTAATAAATAAACACT 7 256 1 TAAACACTCACTTATAATTAATATTTCCT 7 281 1 TGATAAAGGTCATAATATTAATATCAA 8 55 1 TGTTCATATGCCTATTTTTAAAATATTGTTTTG 10 113 1 TCAAATCATGAAAAAATTTAAAAAAAAGACAAA 10 151 0 TTGAAAGGGGAATAAACTAAAAACTAAGAATGC 10 180 1 AGTTAAATTAAATTTAATACTTAACTCTA 12 26 0 * **** **** * MAP Score: 8.70916 Motif 6 CTTCTTTCTTTTTTGCCCCCTTTATAAGAAT 1 15 1 TATTTTCCCTCCTAAAAGGATTT 4 44 0 ACATGGGGGCTCTTGCCCCCTTCTATAAATC 4 18 1 GGCTTTTACCTCTTTGTAGAGTTA 12 3 1 TTTTACCCTCCCTTATCCTTT 0 289 0 TAGTAGATGTACTTACCTCCTTCTTCTGTCA 0 248 0 CCCTTATCCTTTTTTCCTTATGTAGTAGATG 0 270 0 TGTCTTTTGCCCGCCTTTTGGCGGG 5 4 1 AATTTTTTTGATTTCCCTCATCTACTCGTGT 1 67 1 AAATAAGAGGTTTTTCTTTCTCATTTCATAA 7 240 1 TTTTCCTTCTTTCTTTTTTGC 1 0 1 AGTTTTTAGTTTATTCCCCTTTCAAATCATG 10 174 0 TCCGGCTCTTCCCTTACAGCCCTTACT 14 127 0 GATAAGGTACTTTTCCATTCTCAGGGAGAAG 13 30 1 **** ****** MAP Score: 7.69962 Motif 7 AGAAGCTCGGTAAAGAAAAGGAAGAGTTTG 13 56 1 TAAAAAAAGAAATAGAAGAGATTCTAAAAA 11 27 0 ACACCTCAATAATAGAAGAAGTAAGGGCTG 14 108 1 TGAACTACCATATGGAAAAGAG 9 38 1 GTGTAACTTAAAAAGAAGAAACCTGATCAG 1 94 1 TGAAAAAATTTAAAAAAAAGACAAAATTTT 10 146 0 AGTTTGCCGTTAACGAAGAGTACGTGGATG 13 167 1 TCTCCCTGAGAATGGAAAAGTACCTTATCT 13 29 0 TAAAAGGATTTATAGAAGGGGGCAAGAGCC 4 25 0 TTTATATGACTATAAAAAAATTTTTTTGAT 1 49 1 ATCTACTACATAAGGAAAAAAGGATAAGGG 0 271 1 ATTGATACACAATAAAAAAATGTTCATATG 10 93 1 GGGCTTTAAAAATAAAAAAAATTAATGGAG 5 32 1 TCTGCAATGATAACAAAAAGCGTTGAAATG 7 202 1 AAGGGGGCAAAAAAGAAAGAAGGAAAA 1 7 0 TATGAAATGAGAAAGAAAAACCTCTTATTT 7 240 0 AGATGAGGGAAATCAAAAAAATTTTTTTAT 1 60 0 CCGTTTTTATTAAAAAAAGAAATAGAAGAG 11 37 0 ********** MAP Score: 7.07605 Motif 8 AACAACACCTCCTTAAAGTTTTA 2 45 0 TTGTGTATAGCAACCCTTACGTTGGAAACAT 3 10 0 TTGCTATACACAACGCTTGCCACACCTGGAA 3 28 1 TAGCTGACGACTACCCCTACGACCCCGAAGT 3 64 1 TAGGGCATTTCAACGCTTTTTGTTATCATTG 7 206 0 CAAAGTAAATCAACACTTACTTATCATTATA 8 26 0 GGTATTAAAGCAACCCTATCCCCGTCGGAGA 13 209 0 AAGTTTTAACCACCGCTAACTGGAGGTATTA 13 233 0 TCTTCCCTTACAGCCCTTACTTCTTCTATTA 14 117 0 ******** ** MAP Score: 3.86973 Motif 9 TGGCTACAATAACACCTGACAAGGTTCTCG 0 59 1 AACAACACCTCCTTAAAGTTTTA 2 45 0 CAACGCTTGCCACACCTGGAAGATGATAGC 3 38 1 AGCACACCTCCCTTAAATTTAT 6 15 0 GGGTTGCTTTAATACCTCCAGTTAGCGGTG 13 224 1 CCTTCCACCTCCAAGAAGTTTTA 13 256 0 TATGTCCATAAACACCTGAAGGCAAAGTTC 14 44 1 GCCACTCCAGTACACCTCAATAATAGAAGA 14 97 1 ********** MAP Score: 2.74022 Motif 10 ATAACCTAATATTAAGGAAAATTAAATTTA 0 15 1 GAAAATTAAATTTAAGGAGGTTGTGTGATG 0 31 1 GAGATGACAGAAGAAGGAGGTAAGTACATC 0 244 1 CATCTACTACATAAGGAAAAAAGGATAAGG 0 270 1 GGAAAAAAGGATAAGGGAGGGTAAAA 0 284 1 CAAAAAAGAAAGAAGGAAAA 1 0 0 AAATATTCTTATAAAGGGGGCAAAAAAGAA 1 20 0 ACACGAGTAGATGAGGGAAATCAAAAAAAT 1 68 0 CGTGTAACTTAAAAAGAAGAAACCTGATCA 1 93 1 GCTAATGAGGGGGGTTGGTGCCCC 2 4 1 AAATTAAAACTTTAAGGAGGTGTTGTT 2 41 1 ATAAAAAAAATTAATGGAGATATAAATAGA 5 43 1 ATAAATAGAGGTAAAGGAAA 5 64 1 TTCAATAAATTTAAGGGAGGTGTGCT 6 11 1 TCCTTATAATGATAAGTAAGTGTTGATTTA 8 22 1 TTCATGATTTGAAAGGGGAATAAACTAAAA 10 172 1 CTGTGAAAAGGAGAACGTTTTTAG 11 4 1 AATTCGTAAGATGGTGGAGATAAGGTACTT 13 12 1 GCTCGGTAAAGAAAAGGAAGAGTTTGAGTT 13 60 1 TATGGACATAGTAAAGGGGAGTTTGCATAA 14 24 0 AGTAAGGGCTGTAAGGGAAGAGCCGGA 14 127 1 ********** MAP Score: 1.10459