AlignACE 3.0 10/20/99 AlignACE2 -i AA/AA_sum_all002_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944238169 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 mtfB 300 mannosyltransferase B #1 spsK 63 spore coat polysaccharide biosynthesis protein SpsK #2 frdB2_topA 39 frdB2: fumarate reductase iron-sulfur subunit, topA: topoisomerase I #3 lpdA 85 dihydrolipoamide dehydrogenase #4 aq_737 63 hypothetical protein #5 aq_796 41 putative protein #6 flgG2 43 flagellar hook basal-body protein FlgG #7 thdF 145 thiophene and furan oxidation protein #8 minC 23 septum site-determining protein MinC #9 topG2 130 reverse gyrase #10 motA 42 flagellar motor protein MotA #11 topG1 276 reverse gyrase #12 aq_1187 48 putative protein #13 aq_1191 74 hypothetical protein #14 aq_1211 37 putative protein #15 aq_1400 300 hypothetical protein #16 aq_1858 216 flagellar hook assembly protein #17 fliP 231 flagellar biosynthetic protein FliP #18 aq_1922 24 hypothetical protein #19 fliQ 300 flagellar biosynthesis protein FliQ #20 aq_2013 74 hypothetical protein #21 vacB 29 VacB protein (ribonuclease II family) Motif 1 AGAGATGGCTGTGGTGGAGTTGATGTGGACGA 0 179 1 TGGACTTGCAGTGGTGTAACTGATCTAAGTCC 1 38 1 GGTTGGGTGGTGGGGGTGGAGGGAGTCG 7 6 1 GTTAGGGGGTGTGGCGGAATTGGCAGACGCGG 7 77 0 ACCTTCTAAAGTTGTGGAAGTTTACGAGGACG 11 205 0 TGCAAAATTCGTGGTGGAGGAGGTTAAATCCA 16 178 1 CCGTAGTGGAGTTGAAACGTAATG 19 2 1 CTAATGTACCGTAGTGGAGTTGAAACGTAGAA 19 68 1 CTAATGTACCGTAGTGGAGTTGAAACTGTATT 19 134 1 CTAATGTACCGTAGTGGAGTTGAAACTGACTT 19 201 1 ** ****** ** MAP Score: 29.8382 Motif 2 TTGGATTTAACCTCCTCCACCACGAATTTT 16 181 0 GAGGGTTCGACTCCCTCCACCCCCACCACC 7 15 0 TTTTCACGCTGCCCCTCCTCTGCAAGACAC 15 242 0 TACCTCTTCCTCCAGAAAAGAG 13 2 1 TCCTCGTAGTTCTCGTCCTCCTTTACTTTG 17 49 1 TGAGAAGATTTCCCCGCCTCGTAATATCAT 9 102 1 ACAAGGGCTGTTCCGTCCTCGTAAACTTCC 11 192 1 CTGATTATTTTCTCGTCCACATCAACTCCA 0 193 0 ACACCACTTTCTCCTTCCAC 0 0 0 GAAGTCAGTTTCAACTCCACTACGGTACAT 19 204 0 CTCGTCCACATCAACTCCACCACAGCCATC 0 182 0 TCATTACGTTTCAACTCCACTACGG 19 5 0 ATTCTACGTTTCAACTCCACTACGGTACAT 19 71 0 AAATACAGTTTCAACTCCACTACGGTACAT 19 137 0 TCGCTTCCTCCTTTTAAGGC 3 0 1 CTGCTGGATTTCCCTTCCTTATTTTAATGT 19 35 0 CATGTCTTTCCCATCTCCTCACTTGTTCCT 19 106 1 TTTACCATAGCTTCTTCCACACGGTACATT 19 271 0 AGGTTGGCATTTCTCTCCTCGTAGTTCTCG 17 34 1 ACATACCTTCCTCTTTTTCCATT 11 3 1 CAAGAAATGTCCACGCCCTCCGAAGTCAGT 19 225 0 TTACTTACCTCCTTTAGGAAATAT 4 49 0 AACTCCTACCTCCTTTAAAGTTTAA 16 5 1 GACTGTTTATTTCCTTCCTTAACTTCTTTC 15 10 1 TCTTTAAACTTTATGTCCACTCCGATCAAA 15 206 0 AGGTAAAACTTCTTCTCCTTTATCCTTACA 17 179 0 TTGAGGAAGTTCTTCCCCTCGGGAAAGATA 17 136 1 ********** MAP Score: 28.0151 Motif 3 ATCGCTCGAAGGTTGAAAAGAAGCTCTCAATAA 0 45 0 AAAAGGCTTGGTAACATAAGGAATGAGCATGTG 0 101 1 ATAATGATCATGATGATGAGGTCAGGTGGTATG 0 146 1 GTGGAGTTGATGTGGACGAGAAAATAATCAGGT 0 192 1 ATAATTTGCCTTAAAAGGAGGAAGCGA 3 4 0 TTAAAACCCCTTTTCAGGAGGAGCTTC 3 68 1 CTTAACTATTATTATAAGGAAGT 8 2 0 AATTTAAATTTTAAAAAGGAAATCCGATAAA 10 8 1 TAGAAGAAATGGAAAAAGAGGAAGGTATGT 11 7 0 TTTCGAAGAAATAATAGAAGAAATGGAAAAAGA 11 21 0 TACAAAAGCTGGATGAAGAGGAAGCCCTCAAGA 11 64 0 AAGTTGTGGAAGTTTACGAGGACGGAACAGCCC 11 196 0 ACTCTTTTCTGGAGGAAGAGGTA 13 0 0 CCAGAAAGAAGTTAAGGAAGGAAATAAACAGTC 15 10 0 TGGACATAAAGTTTAAAGAGATACAGTGTCTTG 15 217 1 TAAATTAAACTTTAAAGGAGGTAGGAGTT 16 6 0 TTCCGAAGTAGGTTTATGAGGAAATTCATAAAT 16 61 1 CAAAATTCGTGGTGGAGGAGGTTAAATCCAAAC 16 180 1 GCAAAGTAAAGGAGGACGAGAACTACGAGGAGA 17 47 0 TAATTGGGACTTATCAAAAGGTAAAACTTCTTC 17 194 0 GTAATGAACATTAAAATAAGGAAGGGAAATCCA 19 28 1 ACTCCACTACGGTACATTAGGAACTGCTGGATT 19 55 0 ACTCCACTACGGTACATTAGGAACAAGTGAGGA 19 121 0 ACTCCACTACGGTACATTAGGAACTTATTTAGC 19 188 0 TCTTCCACACGGTACATTAGGAACAAAGAAAAT 19 256 0 *** * ****** MAP Score: 22.3115 Motif 4 AGATGGCTTATTGAGAGCTTCTTTTCAACCTTCG 0 38 1 TTATCCGATATCATGCTCCTTTGGGACTTGGA 1 8 1 TCGCTTCCTCCTTTTAAGGCAAAT 3 0 1 TTACTTACCTCCTTTAGGAAATATG 4 48 0 ACATACCTTCCTCTTTTTCCATTTCTT 11 3 1 TTCCTCTTTTTCCATTTCTTCTATTATTTCTTCG 11 17 1 ATATTTTAATTCACAAACTCTTTTCTGGAGGAAG 13 15 0 TTTATTTCCTTCCTTAACTTCTTTCTGGAGAGAG 15 15 1 CAAACCTTCTTCTTGTACTTCTTTTTCAAAGCCA 15 133 0 AAACTCTACTTTCCGAGCTTTTTTCCGATTTGAT 15 178 1 TGAAAGTACTTAGTCTCCTTCTTTTA 15 284 1 AACTCCTACCTCCTTTAAAGTTTAAT 16 2 1 CTCACTCTCTTTTTTAGCTTCTTTTTTCTCTTCA 16 135 0 TCCTCGTAGTTCTCGTCCTCCTTTACTTTGCACT 17 49 1 AAAAGGTAAAACTTCTTCTCCTTTATCCTTACAC 17 178 0 CTGCTGGATTTCCCTTCCTTATTTTAATGTTCAT 19 31 0 AACTGTATTTACAAGAACTCCTTTTTTGAATGCT 19 157 1 CTACGGTACATTAGGAACTTATTTAGCATTCAAA 19 181 0 ** * ******* MAP Score: 22.039 Motif 5 GTTCATTACGTTTCAACTCCACTACGG 19 6 0 AAATTCTACGTTTCAACTCCACTACGGTACA 19 72 0 GTAAATACAGTTTCAACTCCACTACGGTACA 19 138 0 CCGAAGTCAGTTTCAACTCCACTACGGTACA 19 205 0 AGGTACTTATTTTAAAATTTAAGCTTAAC 6 8 0 TCCTACCTCCTTTAAAGTTTAATTTACTAAA 16 13 1 AATTTAAATTTTAAAAAGGAAAT 10 2 1 ACTGTATCTCTTTAAACTTTATGTCCACTCC 15 213 0 CCCAGAGGGTTATAAATTCCATGCTCTGTCC 0 249 0 ACACGGGTAGTATAAAATCCATAAAA 5 5 0 TGTACTTCTTTTTCAAAGCCAGAGCTATGGC 15 123 0 TGCTTTAAATTATAAACTCTATTCGCC 21 6 0 CCTTCCTTATTTTAATGTTCATTACGTTTCA 19 22 0 CGGGGATAAATTTAAAAGTTAAATGAAGAGA 16 112 1 GTTGTATACTTTTAATCTTTAGTAAATTAAA 16 30 0 GAAGAAGGTTTGTAAATTCTACGAAACTCTA 15 155 1 ****** **** MAP Score: 18.529 Motif 6 AATCTGGATAATAAATTCTAAAGCTATAAAAT 2 10 1 GTTAAGCTTAAATTTTAAAATAAGTACCT 6 7 1 GATTTCCTTTTTAAAATTTAAATT 10 2 0 ACCCTCGGAGTCAAAAGGAAAATTTCCCTCGA 11 156 0 AGTTTGTGAATTAAAATATAAAAATTCCTTAA 13 30 1 AACTTTTTGTTCGAAAGGTCAACCTTTACGTA 15 69 0 CGGAGTGGACATAAAGTTTAAAGAGATACAGT 15 212 1 CTTTAGTAAATTAAACTTTAAAGGAGGTAGGA 16 13 0 TAAATGCTTTTCAAATGCTAAATCGGGGATAA 16 89 1 GGGGATAAATTTAAAAGTTAAATGAAGAGAAA 16 113 1 GGGGCAGACTTCAAAGGCTCAAAGCTAAAAAC 17 97 1 TTGGGACTTATCAAAAGGTAAAACTTCTTCTC 17 192 0 AACTCCTTTTTTGAATGCTAAATAAGTTCCTA 19 172 1 TATGCTTTAAATTATAAACTCTATTCGC 21 11 0 ***** * **** MAP Score: 17.7331 Motif 7 TGGCTTATTGAGAGCTTCTTTTCAACCTTC 0 41 1 CGTGTATACAATAATTTCTT 5 31 1 ATTTCTTGAGAAAAGTTCTTTCTATAAGTA 7 124 0 ACATACCTTCCTCTTTTTCCAT 11 2 1 AAGACTCTTGAGGGCTTCCTCTTCATCCAG 11 59 1 TAAGCCCCTTATAATTTCTTGCCT 14 4 0 ATTTCCTTCCTTAACTTCTTTCTGGAGAGA 15 18 1 CTTTCGAACAAAAAGTTCGTCGTTGCGATT 15 84 1 TAGAATTTACAAACCTTCTTCTTGTACTTC 15 146 0 CTCGGAAAGTAGAGTTTCGTAGAATTTACA 15 165 0 AAAGCATTTATGAATTTCCTCATAAACCTA 16 69 0 ACTCTCTTTTTTAGCTTCTTTTTTCTCTTC 16 136 0 CAGGTATTCAAGAACTTCGT 17 0 0 CCCGAGGGGAAGAACTTCCTCAAGTTTTAG 17 129 0 ATCAAAAGGTAAAACTTCTTCTCCTTTATC 17 185 0 GTTGAAACGTAGAATTTCCTCATGTCTTTC 19 86 1 CATTCAAAAAAGGAGTTCTTGTAAATACAG 19 159 0 TGAATGCTAAATAAGTTCCTAATGTACCGT 19 183 1 GATTTTTACCATAGCTTCTTCCACACGGTA 19 275 0 ********** MAP Score: 16.4486 Motif 8 CCATACACCACTTTCTCCTTCCAC 0 4 0 TCGCTTCCTCCTTTTAAGGCAAA 3 3 1 TTACTTACCTCCTTTAGGAAATATGAG 4 46 0 TTAAGATATACCTCTTTCCCGAAGATGACA 9 54 1 ATTTATCGGATTTCCTTTTTAAAATTTAAA 10 12 0 ACATACCTTCCTCTTTTTCCATTTCT 11 6 1 TTTTCCATTTCTTCTATTATTTCTTCGAAA 11 24 1 CTCTTGAGGGCTTCCTCTTCATCCAGCTTT 11 63 1 TACCTCTTCCTCCAGAAAAGAG 13 2 1 GACTGTTTATTTCCTTCCTTAACTTCTTT 15 9 1 CCTTCCTTAACTTCTTTCTGGAGAGAGAAA 15 22 1 TCTTCTTGTACTTCTTTTTCAAAGCCAGAG 15 130 0 TCACGCTGCCCCTCCTCTGCAAGACACTGT 15 239 0 AACTCCTACCTCCTTTAAAGTTTAA 16 5 1 GATTTAACCTCCTCCACCACGAATTTTGCA 16 178 0 CTTCTTTCCCCCAGTTTGGA 16 206 0 TCGTAGTTCTCGTCCTCCTTTACTTTGCAC 17 52 1 AAAGGTAAAACTTCTTCTCCTTTATCCTTA 17 181 0 CTGGATTTCCCTTCCTTATTTTAATGTTCA 19 32 0 AATTTCCTCATGTCTTTCCCATCTCCTCAC 19 98 1 TTTACCATAGCTTCTTCCACACGGTACATT 19 271 0 ********** MAP Score: 3.58463 Motif 9 TGGTGTATGGCAACAGATGGCTTATTGAGAGCTTCTT 0 24 1 TGAGAGATGGCTGTGGTGGAGTTGATGTGGACGAGAA 0 177 1 GAAAATAATCAGGTCAGGGAGATCATAACAGATTTAT 0 211 1 ATTTATAACCCTCTGGGTGATTTTTAACTGAATACCT 0 263 1 GAAGCTCCTCCTGAAAAGGGGTTTTAATTGCCTTTAA 3 58 0 ACCTCTTCCTCCAGAAAAGAGTTTGTGAATTAAAATA 13 11 1 AAAGCCAGAGCTATGGCAGAGTTCTCAATCGCAACGA 15 103 0 AAAAAAGAAGCTAAAAAAGAGAGTGAGACTTGACTTT 16 142 1 CCGTAGTGGAGTTGAAACGTAATGAAC 19 0 1 TCCTAATGTACCGTAGTGGAGTTGAAACGTAGAATTT 19 66 1 TCCTAATGTACCGTAGTGGAGTTGAAACTGTATTTAC 19 132 1 ATTTAGCATTCAAAAAAGGAGTTCTTGTAAATACAGT 19 158 0 TCCTAATGTACCGTAGTGGAGTTGAAACTGACTTCGG 19 199 1 TCTGAGGAATCTCATACTGAGTTAAAATTTCCACT 20 49 1 * * ****** ** MAP Score: 1.13448 Motif 10 CCCCTTTTCAGGAGGAGCTTC 3 74 1 CATATTTCCTAAAGGAGGTAAGTAA 4 48 1 TAAGTACCTAGAGGGAGGTGGTT 6 30 1 GGTTGGGTGGTGGGGGTGGAGGGAGTCG 7 8 1 AATGGAAAAAGAGGAAGGTATGT 11 3 0 AGAAGTACAAGAAGAAGGTTTGTAAATTCT 15 145 1 GTCTTGCAGAGGAGGGGCAGCGTGAAAAGA 15 244 1 TACAACTTCCGAAGTAGGTTTATGAGGAAA 16 55 1 AATTCGTGGTGGAGGAGGTTAAATCCAAAC 16 183 1 GGATAAAGGAGAAGAAGTTTTACCTTTTGA 17 184 1 TATTATTATACAAGGGGGTATT 18 2 0 AACTGACTTCGGAGGGCGTGGACATTTCTT 19 224 1 GTACCGTGTGGAAGAAGCTATGGTAAAAAT 19 274 1 ********** MAP Score: 0.498705 Motif 11 TCTGGATAATAAATTCTAAAGCTATAAAATT 2 12 1 TCAAAATGCTAAAATTAAAGGCAATTAAAAC 3 44 1 GTTAAGCTTAAATTTTAAAATAAGTACCTA 6 9 1 TTAAAAAATCAAACTCAAAGGAG 9 2 0 AATTTAAATTTTAAAAAGGAAATCCG 10 5 1 ATTTCTTCGAAAAGCTCAAGACTCTTGAGGG 11 42 1 TTTGTGAATTAAAATATAAAAATTCCTTAAT 13 32 1 AGGCAAGAAATTATAAGGGGCTTAAAAT 14 7 1 GAGTGGACATAAAGTTTAAAGAGATACAGTG 15 214 1 TAATTTACTAAAGATTAAAAGTATACAACTT 16 32 1 AATCGGGGATAAATTTAAAAGTTAAATGAAG 16 109 1 GAGAAAAAAGAAGCTAAAAAAGAGAGTGAGA 16 139 1 GCAGACTTCAAAGGCTCAAAGCTAAAAACCT 17 100 1 TCGTGTGTGTAAGGATAAAGGAGAAGAAGTT 17 172 1 AAACATATTAAAGACTTAAAGGTGCACGACT 20 17 1 *** ******* MAP Score: 0.238348