AlignACE 3.0 10/20/99
AlignACE2 -i AA/AA_sum_all057_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944240367
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	sucC1	67	succinyl-CoA ligase beta subunit
#1	dcd	300	deoxycytidine triphosphate deaminase
#2	aq_1618	43	putative protein
#3	sucC2	29	succinyl-CoA ligase beta subunit
#4	sucD1	53	succinyl-CoA ligase alpha subunit

Motif 1
 TCTCCTTCCTCCTGAAACTTAATTTTAAAACAAC	0	43	0
ATCCGTAACTCTCGGAAACTTCCCCGATAACTCCT	1	31	1
TCCCCGATAACTCCTCAAATTCCCTTGCCTGTTCA	1	51	1
GTTCATTTTGTCCCAGAGCCTCATTTATAAGGGCA	1	81	1
GTTTATACTTTTCGTAAGAGTCCTTCGCAAGAAGC	1	120	1
GATACTTGAACTCGGTAATATACCTCATTCCTATG	1	174	1
GATCTCTTACTCCCTGAAGGTCCTTCTTTTTGAGT	1	216	1
TCTATGCCAATTCTGAACTTTACTCTCATAATAAT	1	266	1
          *** * *   *****
MAP Score: 1.89474

Motif 2
ATTTTAATTAAAATACAATAAAATGTTGTTT	0	19	1
ATTGTATTTTAATTAAAATAAATCAAGT   	0	7	0
CCACCTCCGAAAGTAAAAAAATGTT      	3	4	0
          AATTTCTATAACGAAAGAAAG	1	0	1
CTTTAAAAACTAATAATATAATACGAG    	2	26	1
        ATTAATACAATTATTATGAGAGT	1	287	0
          ** ********
MAP Score: 1.1765

Motif 3
TTCCCCGATAACTCCTCAAATTCCCTTGCCTGTTCA	1	50	1
AAGGGCAAGGAGTTTATACTTTTCGTAAGAGTCCTT	1	109	1
CGCAAGAAGCAGCCACTTCGTTGCCTCCAGATACTT	1	145	1
AGATACTTGAACTCGGTAATATACCTCATTCCTATG	1	173	1
GGGATCTCTTACTCCCTGAAGGTCCTTCTTTTTGAG	1	214	1
CTTCTTTTTGAGTCTTTTCCCTTCCTTTTCTATGCC	1	238	1
          ****  * *  * ***
MAP Score: 1.07023