AlignACE 3.0 10/20/99
AlignACE2 -i AA/AA_sum_all062_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944240497
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	glgP	110	glycogen phosphorylase
#1	speC	35	ornithine decarboxylase
#2	furR1	46	transcriptional regulator (FurR family)
#3	lysA	21	diaminopimelate decarboxylase
#4	aq_1210	37	hypothetical protein
#5	aq_1420	22	hypothetical protein

Motif 1
AGCAGTTTTTTAAAATGAATCTTGTGAGGT	0	17	0
       AGCAAATATCTATAAAAGTATTT	1	3	1
    TCCGATAAATATAAATACTTTTATAG	1	19	0
   GACATAAAAAAATAAATTGAGAAGGAA	2	29	0
  ATTTTGTAAAATCTCAATTTT       	3	8	1
  AGGATATATAATCTAAAGTAAA      	5	8	1
          **********
MAP Score: 4.52637

Motif 2
  AGCAAATATCTATAAAAGTATTTATATTTATCG	1	8	1
CAAGATTCATTTTAAAAAACTGCTTACACAGGCGG	0	23	1
      ATTTTGTAAAATCTCAATTTT        	3	4	1
TTATAAGGGGCTTAAAATAATCCTTGT        	4	2	0
GAAGGAAAACTTTTCAAGAACATTTA         	2	1	0
        GACATAAAAAAATAAATTGAGAAGGAA	2	29	0
GTCCCCGTATCATAGATACGCGGTTTTAGCCCGCG	0	63	1
GCGGATTTACTATAAAATACAAGTA          	0	95	1
      AGGATATATAATCTAAAGTAAA       	5	4	1
          * ** ** * ** **
MAP Score: 1.74982