AlignACE 3.0 10/20/99
AlignACE2 -i AA/AA_sum_all071_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944240630
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	aq_1760	32	putative protein
#1	aq_1761	300	putative protein

Motif 1
GATAGAAGACGTCCCTTTCCCCGTGTCCGT	1	128	1
TTTTCCTTGATTTCCTTTCCGACCCCGTAA	1	98	0
ACCGGGATTATCCCCTTTGCACACACGGGG	1	213	1
GTGGAAAACTCCCTCTTTCCAGGAGCCACG	1	180	1
GGACGTCTTCTATCTTTTCCTTGATTTCCT	1	112	0
ATGTTCTGTGCAGTCTTTGCGTTTGAGCTC	1	11	0
          **********
MAP Score: 3.47973

Motif 2
TTATGTTCTGTGCAGTCTTTGCGTTTGAGCT	1	12	0
TACTTTTGAGTTCTGTCTTATGTTCTGTGCA	1	29	0
AAGGGACGTCTTCTATCTTTTCCTTGATTTC	1	114	0
TTGAGTCGAGTTCCGTCATTTTTAGAACGTT	1	243	0
TTTAGGGCTTTTAAGACTTTTGAGTCGAGTT	1	262	0
      TAATTTAAATCTATTCCTTTAGGGC	1	285	0
          *** *******
MAP Score: 3.13103

Motif 3
GCAAAGACTGCACAGAACATAAGACAGAAC	1	21	1
CAGAACATAAGACAGAACTCAAAAGTAGCG	1	33	1
ATTCGCTCCCGACAAAGCACTCAGTTGTTA	1	71	1
TCAAGGAAAAGATAGAAGACGTCCCTTTCC	1	118	1
TTCTAAAAATGACGGAACTCGACTCAAAAG	1	247	1
          **********
MAP Score: 3.08182

Motif 4
        AATCCACCTCCTCCTTTTATTTT	0	19	0
TTCCTTGATTTCCTTTCCGACCCCGTAACAA	1	95	0
ATAGAAGACGTCCCTTTCCCCGTGTCCGTTT	1	129	1
GAGGGAGTTTTCCACTTCGTCTATTTGAACC	1	164	0
GTGGAAAACTCCCTCTTTCCAGGAGCCACGA	1	180	1
ACCGGGATTATCCCCTTTGCACACACGGGGA	1	213	1
          *** *******
MAP Score: 2.81209