AlignACE 3.0 10/20/99 AlignACE2 -i AG/AG_fusions002_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944240981 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 AF0088 300 thiamine biosynthesis protein, putative #1 AF0231 232 glutamine ABC transporter, periplasmic glutamine-binding protein (glnH) #2 AF0232 39 glutamine ABC transporter, permease protein (glnP) #3 AF0728 97 cobalamin biosynthesis protein (cbiM-1) #4 AF0825 148 branched-chain amino acid ABC transporter, permease protein (braD-2) #5 AF1259 36 inosine monophosphate dehydrogenase, putative #6 AF1260 207 phosphoribosylformylglycinamidine synthase I (purQ) #7 AF1356 96 phosphate ABC transporter, periplasmic phosphate-binding protein (phoX) #8 AF1404 29 transcriptional regulatory protein, AsnC family #9 AF1405 32 conserved hypothetical protein #10 AF1406 92 A. fulgidus predicted coding region AF1406 #11 AF1409 88 modification methylase, type III R/M system #12 AF1410 284 ISA0963-5, putative transposase #13 AF1468 231 A. fulgidus predicted coding region AF1468 #14 AF1768 300 dipeptide ABC transporter, permease protein (dppB) Motif 1 CCTTTCGGTCAGCCGCCCACCGCCGCTCCCACTGTAATGTTTCT 0 24 0 GACCGAAAGGAGGAAAGTCCCCCCACCCGCTGTGGCGGAAGGCC 0 58 1 TCTCGTTTCTGTTCCTCCTCCGCCCCTTCTCAGGGGCCTTCCGC 0 92 0 GATTCCGCAAGGATGAGGTCACCCGCTCCGGATGAAACGGCCTC 0 156 1 GCTCCGGATGAAACGGCCTCCTCCCCGCCGGGTGCAACGCGTAA 0 180 1 AACAGAAGGGGGCTTACTACCGCCACTCCCAAAGTTTTTTGAAC 0 247 1 TTAGAGAAAGGAATCAGACCAGCCCCACCAGCTAAAAGAATTCT 6 78 1 GTCAAGAATTGCATTTGTTGCACTGCTCCTCGCGGCTTTACTCT 12 21 1 GGACCTACAGGAGCTTGAGCAGCTTCTCCAGGAGCTTGAGAGCT 12 180 1 CCTTTTCTCAGACTTCCGACAACCACAACCTTCGCCCTTTGCAG 13 87 1 * * ** ** * ** * MAP Score: 15.337 Motif 2 AACCTAAAATAAAATCCAAACACCCTGGTTTT 1 104 1 TTAATTGGAAAAAAACCAAAAAGGTTTTATAC 4 106 1 AATCTTACTGAAAATCCAAAAAATTTAAATAA 3 37 1 TACCATCGTGAAAATCTAAATATTTATGCGTT 7 11 1 CCGACACGGAAAAAGCTTAAAAGATTGCGGTT 6 173 1 TATTAAAAATAAAAATCAAACATTAAACTCAA 12 233 0 CACAATTTTTAAAACTTAAAAAATTTTCGATA 1 203 0 ATTTTTGGGGAAAAATTTAAGAGAAAGCTCAA 10 39 1 CTGTCTAGGGAAAAGTAAAAAAAGAAAAACCT 6 39 0 TAAAAAAAGAAAAACCTAAACTTTCAAAGCTG 6 24 0 ATAGGATTGCAAAAGTATAAAACCTTTTTGGT 4 120 0 TTTATGCTCTAAAAATATAAGAG 1 1 0 CAAAAATTGGAAAAGCTTAAATACATGCTGCT 1 164 0 TTTTCGATAGATAAATCAAAAATTGGAAAAGC 1 180 0 **** ***** * MAP Score: 15.3326 Motif 3 CTTTCGGTCAGCCGCCCACCGCCGCTCCCACTGTAATGT 0 28 0 TGACCGAAAGGAGGAAAGTCCCCCCACCCGCTGTGGCGG 0 57 1 CCCACCCGCTGTGGCGGAAGGCCCCTGAGAAGGGGCGGA 0 79 1 TTGCGGAATCATCGCATTTCCCCGCACCGGTCTCGTTTC 0 127 0 CGTTTCATCCGGAGCGGGTGACCTCATCCTTGCGGAATC 0 156 0 ACCCGCTCCGGATGAAACGGCCTCCTCCCCGCCGGGTGC 0 176 1 ACAGAAGGGGGCTTACTACCGCCACTCCCAAAGTTTTTT 0 248 1 GCACGGAGCCACTGCAGAACACCTCCCGCTAATTAGAAG 1 44 1 ATCTTAGAGAAAGGAATCAGACCAGCCCCACCAGCTAAA 6 75 1 ACTAAAGAGTGCAGAACATCAACGCTGCCGACACGGAAA 6 146 1 AATTGCATTTGTTGCACTGCTCCTCGCGGCTTTACTCTT 12 27 1 GGGAAAGCAAGTGGAACATCAACCCGCACCTCAAACAAC 12 78 1 CTTTCTCCCAGGTTATATACTCCCCGCTGCCAGTTAAGG 13 201 1 * ** * ** * *** MAP Score: 11.2993 Motif 4 CAGCATGTATTTAAGCTTTTCCAATTTTTGATT 1 166 1 TCATAGAAAGTGAAATTTTTCCTCATGGAGTTT 4 50 0 AAAACCTTTTTGGTTTTTTTCCAATTAATAGCA 4 101 0 CAAAAAGGTTTTATACTTTTGCAATCCTATTTT 4 122 1 GTTTTTCTTTTTTTACTTTTCCCTAGACAGGAC 6 41 1 ACCAGCTAAAAGAATTCTTTTCAAATTGATGCC 6 104 1 CCGCAATCTTTTAAGCTTTTTCCGTGTCGGCAG 6 170 0 ATCTAAATATTTATGCGTTTTCCCTAAGGGATG 7 24 1 TCGACTCTCCTTGTCTGTTTTCACAATTTTTGG 10 14 1 GAGCTTTCTCTTAAATTTTTCCCCAAAAATTGT 10 36 0 GGTCAAGAATTGCATTTGTTGCACTGCTCCTCG 12 20 1 TCCTCGCGGCTTTACTCTTTGCAGGCTGCCAGG 12 47 1 AATTTCCAAGTTGCTCCTTTTCTCAGACTTCCG 13 72 1 AACCACAACCTTCGCCCTTTGCAGATAAAATCC 13 107 1 GATAAAATCCTTTATTGTTTTCATCTATAATGA 13 130 1 GATTAGCCCATTAAATTTTTGCCAGATACACTC 14 37 0 CTCTCTTCCTTTTTCTTGTTTCATGATTAGTTT 14 117 0 GAAATCGACATGGTTCTTTTTCACTATCGTTTT 14 198 1 ** ******** MAP Score: 10.6702 Motif 5 AGAAACATTACAGTGGGAGCGGCGGTGGGCGGCTGACC 0 24 1 AAAGTCCCCCCACCCGCTGTGGCGGAAGGCCCCTGAGA 0 71 1 GCGGAAGGCCCCTGAGAAGGGGCGGAGGAGGAACAGAA 0 92 1 TTACGCGTTGCACCCGGCGGGGAGGAGGCCGTTTCATC 0 186 0 GGTAGTAAGCCCCCTTCTGTTCCGGCGGCATTAGACTG 0 230 0 GTTCAAAAAACTTTGGGAGTGGCGGTAGTAAGCCCCCT 0 253 0 ATCTTTTAAGCTTTTTCCGTGTCGGCAGCGTTGATGTT 6 160 0 * ** * * *** ** MAP Score: 9.9896 Motif 6 CCGCCCACCGCCGCTCCCACTGTAATGTTTCT 0 24 0 TCCTTTCGGTCAGCCGCCCACCGCCGCTCCCA 0 37 0 AGGAGGAAAGTCCCCCCACCCGCTGTGGCGGA 0 65 1 TCTCAGGGGCCTTCCGCCACAGCGGGTGGGGG 0 77 0 TTCTGTTCCTCCTCCGCCCCTTCTCAGGGGCC 0 98 0 TCATCGCATTTCCCCGCACCGGTCTCGTTTCT 0 126 0 AGGATGAGGTCACCCGCTCCGGATGAAACGGC 0 165 1 GATGAAACGGCCTCCTCCCCGCCGGGTGCAAC 0 186 1 CAGTCTAATGCCGCCGGAACAGAAGGGGGCTT 0 230 1 AGGGGGCTTACTACCGCCACTCCCAAAGTTTT 0 253 1 GCTGCTAAACCTTCCTCCAATGCATGGTGTAG 1 138 0 GGAATCAGACCAGCCCCACCAGCTAAAAGAAT 6 87 1 AACATCAACGCTGCCGACACGGAAAAAGCTTA 6 160 1 TAAGAGAAAGCTCAAGCTCCTGAGATATAGTA 10 56 1 TTCATACCCTCCAGTACTATATCT 10 78 0 GTGGAACATCAACCCGCACCTCAAACAACCCC 12 88 1 GCACCTCAAACAACCCCTCAAGTTACTCCAAC 12 103 1 GGAGCTTGAGCAGCTTCTCCAGGAGCTTGAGA 12 189 1 ** ******* * MAP Score: 8.4624 Motif 7 GTCAGCCGCCCACCGCCGCTCCCACTGTAATGTTTCTCC 0 22 0 GGAAAGTCCCCCCACCCGCTGTGGCGGAAGGCCCCTGAG 0 69 1 GGAACAGAAACGAGACCGGTGCGGGGAAATGCGATGATT 0 121 1 CAAGGATGAGGTCACCCGCTCCGGATGAAACGGCCTCCT 0 163 1 ATGAAACGGCCTCCTCCCCGCCGGGTGCAACGCGTAAGC 0 187 1 GTAGTAAGCCCCCTTCTGTTCCGGCGGCATTAGACTGAG 0 228 0 AAAATCCAAACACCCTGGTTTTGGCTACACCATGCATTG 1 114 1 AGAACATCAACGCTGCCGACACGGAAAAAGCTTAAAAGA 6 158 1 ATCTCGAACACGAAACCGATACGCTCAAAAATGAATGGG 11 29 1 ATCTTATGCTCCCAGCCGGAGCGATAAAAAGATTAGCCC 14 61 0 GAAAAAGAACCATGTCGATTTCGGGAGAAATAATTAACG 14 181 0 * * *** *** * * MAP Score: 6.96019 Motif 8 TTAATAGTCGTCGGAGAAACATTACAGTGGGAGCGGCGGTGG 0 5 1 CCGGAACAGAAGGGGGCTTACTACCGCCACTCCCAAAGTTTTTTGAA 0 243 1 TCTTAGAGAAAGGAATCAGACCAGCCCCACCAGCTAAAAGAATTCTT 6 76 1 CTAGCACTAAAGAGTGCAGAACATCAACGCTGCCGACACGGAAAAAG 6 141 1 TGCCAGGGAAAGCAAGTGGAACATCAACCCGCACCTCAAACAACCCC 12 73 1 CAAGCTCTCAAGCTCCTGGAGAAGCTGCTCAAGCTCCTGTAGGTCCT 12 179 0 TCCTTTTCTCAGACTTCCGACAACCACAACCTTCGCCCTTTGCAGAT 13 86 1 ** * ** * * * * * MAP Score: 6.44534 Motif 9 CACCCGCTGTGGCGGAAGGCCCCTGAGAAGGGGCGGAGGAGGAACA 0 81 1 AAGGGGCGGAGGAGGAACAGAAACGAGACCGGTGCGGGGAAATGCG 0 108 1 GAGACCGGTGCGGGGAAATGCGATGATTCCGCAAGGATGAGGTCAC 0 132 1 CTTCTGTTCCGGCGGCATTAGACTGAGCCGCTTACGCGTTGCACCC 0 209 0 CCTCCCGCTAATTAGAAGCTAAACCAGTAGCCAAAGCTAAACCTAA 1 65 1 ACCATGCATTGGAGGAAGGTTTAGCAGCATGTATTTAAGCTTTTCC 1 142 1 CGATCTTAGAGAAAGGAATCAGACCAGCCCCACCAGCTAAAAGAAT 6 73 1 ACTCTTTAGTGCTAGTAACGGCATCAATTTGAAAAGAATTCTTTTA 6 110 0 TTCCCTAAGGGATGGTATATACAACATTTACTAACTATATGATGTA 7 43 1 GTCAACATAACAAAGGACCTACAGGAGCTTGAGCAGCTTCTCCAGG 12 166 1 CCGTGTTATGATATATAACAGTATCTTGAGTGTATCTGGC 14 4 1 TAATCATGAAACAAGAAAAAGGAAGAGAGGCTTTAGCATCAACGTG 14 121 1 TTCGAGCCTTCTCAGAAGTGCCATGAGCTTCAAACGTGCATCTGAT 14 229 1 * ** * * *** * * MAP Score: 6.33304 Motif 10 CAGCCGCCCACCGCCGCTCCCACTGTAATGTT 0 27 0 AGGAAAGTCCCCCCACCCGCTGTGGCGGAAGG 0 68 1 TGTTCCTCCTCCGCCCCTTCTCAGGGGCCTTC 0 95 0 AGGATGAGGTCACCCGCTCCGGATGAAACGGC 0 165 1 GAAACGGCCTCCTCCCCGCCGGGTGCAACGCG 0 189 1 GCATTAGACTGAGCCGCTTACGCGTTGCACCC 0 209 0 GGGCTTACTACCGCCACTCCCAAAGTTTTTTG 0 256 1 AGCCACTGCAGAACACCTCCCGCTAATTAGAA 1 50 1 GTCAATCTGACACAAGCTCAAGAAATCTGGAG 3 70 1 AAAGGAATCAGACCAGCCCCACCAGCTAAAAG 6 84 1 TAAGAGAAAGCTCAAGCTCCTGAGATATAGTA 10 56 1 TTCATACCCTCCAGTACTATATCT 10 78 0 AAATGCAATTCTTGACCTCATGGCTCA 12 5 0 GAACATCAACCCGCACCTCAAACAACCCCTCA 12 91 1 GCACCTCAAACAACCCCTCAAGTTACTCCAAC 12 103 1 GGAGAAGCTGCTCAAGCTCCTGTAGGTCCTTT 12 177 0 TGTCCAAGCTCTCAAGCTCCTGGAGAAGCTGC 12 198 0 GTTACGGCTTCAAGAGCTTCTCTGACGAGAAT 13 43 1 ATTTTTGCCAGATACACTCAAGATACTGTTAT 14 24 0 TCAGAAGTGCCATGAGCTTCAAACGTGCATCT 14 240 1 ** ******* * MAP Score: 5.54649 Motif 11 CGCCACTCCCAAAGTTTTTTGAACCCTCCACA 0 267 1 AGTGAAAAATTTGTGGAGGGTTCAAAA 0 283 0 TAGATAAATCAAAAATTGGAAAAGCTTAAATA 1 173 0 TTAAAACTTAAAAAATTTTCGATAGATAAATC 1 195 0 TTTAAGTTTTAAAAATTGTGAGCCCTC 1 215 1 CAAAAAAATTTTTTATATCCCTCCT 2 3 1 GACTTTATTTAAATTTTTTGGATTTTCAGTAA 3 41 0 AAAAAACCAAAAAGGTTTTATACTTTTGCAAT 4 115 1 CAAAAGTTTTTAGCTTGCCGTCA 5 1 1 TATAGTTAGTAAATGTTGTATATACCATCCCT 7 50 0 TAAATATTTTTAAAGTCTCGCCT 9 1 1 ATTTTTCCCCAAAAATTGTGAAAACAGACAAG 10 23 0 ATTTTTGGGGAAAAATTTAAGAGAAAGCTCAA 10 39 1 TGTATCTGGCAAAAATTTAATGGGCTAATCTT 14 40 1 ********* * MAP Score: 5.48856 Motif 12 GGTCAGCCGCCCACCGCCGCTCCCACTGTAATGT 0 28 0 AAGGAGGAAAGTCCCCCCACCCGCTGTGGCGGAA 0 64 1 TTCTGTTCCTCCTCCGCCCCTTCTCAGGGGCCTT 0 96 0 ATCGCATTTCCCCGCACCGGTCTCGTTTCTGTTC 0 122 0 GATGAGGTCACCCGCTCCGGATGAAACGGCCTCC 0 167 1 GATGAAACGGCCTCCTCCCCGCCGGGTGCAACGC 0 186 1 AGGGGGCTTACTACCGCCACTCCCAAAGTTTTTT 0 253 1 AGGAATCAGACCAGCCCCACCAGCTAAAAGAATT 6 86 1 CATTTGTTGCACTGCTCCTCGCGGCTTTACTCTT 12 32 1 GGAACATCAACCCGCACCTCAAACAACCCCTCAA 12 90 1 AGCTTGAGCAGCTTCTCCAGGAGCTTGAGAGCTT 12 191 1 ACAACCACAACCTTCGCCCTTTGCAGATAAAATC 13 105 1 ** ** ** * *** MAP Score: 4.18997 Motif 13 GTCGGAGAAACATTACAGTGGGAGCGGCGGTGGGCGGCTGACCGA 0 19 1 AGGGGCCTTCCGCCACAGCGGGTGGGGGGACTTTCCTCCTTTCGG 0 60 0 TGGCGGAAGGCCCCTGAGAAGGGGCGGAGGAGGAACAGAAACGAG 0 90 1 GGAACAGAAACGAGACCGGTGCGGGGAAATGCGATGATTCCGCAA 0 121 1 TGAGGTCACCCGCTCCGGATGAAACGGCCTCCTCCCCGCCGGGTG 0 169 1 GCCGCTTACGCGTTGCACCCGGCGGGGAGGAGGCCGTTTCATCCG 0 184 0 GTAGTAAGCCCCCTTCTGTTCCGGCGGCATTAGACTGAGCCGCTT 0 222 0 TGCAGAACATCAACGCTGCCGACACGGAAAAAGCTTAAAAGATTG 6 155 1 * * * * **** * * MAP Score: 3.16386 Motif 14 TAGTCGTCGGAGAAACATTACAGTGGGAGCGGCGGTGGGCGG 0 14 1 CGAAAGGAGGAAAGTCCCCCCACCCGCTGTGGCGGAAGGCCC 0 61 1 CGCTGTGGCGGAAGGCCCCTGAGAAGGGGCGGAGGAGGAACA 0 85 1 GAGGGTTCAAAAAACTTTGGGAGTGGCGGTAGTAAGCCCCCT 0 253 0 CCGCTAATTAGAAGCTAAACCAGTAGCCAAAGCTAAACCTAA 1 69 1 TCAACATAACAAAGGACCTACAGGAGCTTGAGCAGCTTCTCC 12 167 1 AGGAGCTTGAGCAGCTTCTCCAGGAGCTTGAGAGCTTGGACA 12 188 1 CATGAAACAAGAAAAAGGAAGAGAGGCTTTAGCATCAACGTG 14 125 1 * ** *** ** ** MAP Score: 1.41149 Motif 15 GCGGCGGTGGGCGGCTGACCGAAAGGAGGAAAGT 0 42 1 AGTCCCCCCACCCGCTGTGGCGGAAGGCCCCTGA 0 73 1 CAGAAACGAGACCGGTGCGGGGAAATGCGATGAT 0 125 1 GATGAGGTCACCCGCTCCGGATGAAACGGCCTCC 0 167 1 CGGCCTCCTCCCCGCCGGGTGCAACGCGTAAGCG 0 193 1 CAACGCGTAAGCGGCTCAGTCTAATGCCGCCGGA 0 214 1 TCAGTCTAATGCCGCCGGAACAGAAGGGGGCTTA 0 229 1 GAACATCAACGCTGCCGACACGGAAAAAGCTTAA 6 159 1 TTATATACTCCCCGCTGCCAGTTAAGGC 13 213 1 TTTTATCGCTCCGGCTGGGAGCATAAGATTCATT 14 71 1 ******* * * * MAP Score: 1.38706 Motif 16 GAGAAACATTACAGTGGGAGCGGCGGTGGG 0 23 1 AGTGGGAGCGGCGGTGGGCGGCTGACCGAA 0 35 1 TCCGCCACAGCGGGTGGGGGGACTTTCCTC 0 67 0 GCCCCTGAGAAGGGGCGGAGGAGGAACAGA 0 99 1 AGAAACGAGACCGGTGCGGGGAAATGCGAT 0 126 1 CGTTTCATCCGGAGCGGGTGACCTCATCCT 0 165 0 TTGCACCCGGCGGGGAGGAGGCCGTTTCAT 0 187 0 TCTATGATGTACAGTGGGAGTCTAATGCTA 4 76 1 AAGAGTAAAGCCGCGAGGAGCAGTGCAACA 12 36 0 TACTCTTTGCAGGCTGCCAGGGAAAGCAAG 12 59 1 CCTTAACTGGCAGCGGGGAGTATATAACCT 13 210 0 TTTATCGCTCCGGCTGGGAGCATAAGATTC 14 72 1 ********** MAP Score: 0.567704 Motif 17 GAGAAACATTACAGTGGGAGCGGCGGTGGGCGGCTG 0 23 1 AGTCCCCCCACCCGCTGTGGCGGAAGGCCCCTGAGA 0 73 1 GGAAGGCCCCTGAGAAGGGGCGGAGGAGGAACAGAA 0 94 1 GGAGGCCGTTTCATCCGGAGCGGGTGACCTCATCCT 0 165 0 ACGCGTTGCACCCGGCGGGGAGGAGGCCGTTTCATC 0 186 0 CCTAAAGTGCTCAAAAGGCGAATTAGTGAAACTCCA 4 22 1 CCAGTACTATATCTCAGGAGCTTGAGCTTTCTCTTA 10 56 0 TAACAAAGGACCTACAGGAGCTTGAGCAGCTTCTCC 12 173 1 TTGAGCAGCTTCTCCAGGAGCTTGAGAGCTTGGACA 12 194 1 TCTTATGCTCCCAGCCGGAGCGATAAAAAGATTAGC 14 63 0 TGAAATACAATCTTCAGGCGATAAAGGTACAACAAT 14 274 1 ** * ** *** ** MAP Score: 0.40508