AlignACE 3.0 10/20/99
AlignACE2 -i AG/AG_fusions023_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944241636
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	AF0384	97	conserved hypothetical protein
#1	AF0385	28	conserved hypothetical protein
#2	AF0388	61	conserved hypothetical protein
#3	AF0795	96	conserved hypothetical protein
#4	AF0797	35	conserved hypothetical protein

Motif 1
TCGGCGTGACCTCCTACGTCTTGGTGCTCCGCTG	0	32	0
AAGGTGTCCATTTATAAGTCTTGGCTCTACTTTC	0	64	0
TCAGCCCTCTCTCCCAGCTCATGTAGATTTTGAT	2	21	0
TTAAAATATCTTTCCATTTCTTGGTGTTCGACTA	3	33	1
TTTTTAACCTCTGCAAACTCTTGGCT        	4	19	1
          ** * *  ******
MAP Score: 9.01033

Motif 2
TATTCACAACAGCGGAGCACCAAGACGTAGGAGGTCACG	0	23	1
GGTCACGCCGAAAGTAGAGCCAAGACTTATAAATGGACA	0	55	1
       TTGGATGCATTATAAATAACTCTTACCC    	1	6	0
       GGAGCTGTTTCATCAAAATCTACATGAGCTGG	2	3	1
    CGATACGTACTTCTATTAAGAGGTTAAAATATCTT	3	6	1
TCCATTTCTTGGTGTTCGACTAATAGATAACTATAAATT	3	45	1
AGAGTTTGCAGAGGTTAAAAAAAGATTTAG         	4	1	0
          *  ***  *  ** *  **
MAP Score: 1.81611

Motif 3
CGGAGCACCAAGACGTAGGAGGTCACGCCG	0	35	1
CGCCGAAAGTAGAGCCAAGACTTATAAATG	0	60	1
AAAATCTACATGAGCTGGGAGAGAGGGCTG	2	24	1
ACTTCTATTAAGAGGTTAAAATATCTTTCC	3	18	1
AAGAGTTTGCAGAGGTTAAAAAAAGATTTA	4	11	0
          **********
MAP Score: 0.725212