AlignACE 3.0 10/20/99
AlignACE2 -i AG/AG_fusions025_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944241646
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	AF0471	125	2-ketoglutarate ferredoxin oxidoreductase, subunit gamma (korG)
#1	AF0748	47	A. fulgidus predicted coding region AF0748

Motif 1
ACTATTTGTTTTTGTTGTATTTAAACAATACGT	0	16	1
CATCAACTATTGAGGCATACGTATTGTTTAAAT	0	34	0
TGCCTCAATAGTTGATGTATTCATCTGAAGGGT	0	50	1
TGAAGGGTTGGGAGTAATATATAGGAAAGATTT	0	75	1
GTAATATATAGGAAAGATTTATAAAATTTCATG	0	88	1
TAAAATTTCATGCGGAATATTTAAAC       	0	109	1
AGCAAGTTCGGGCGAGATTTTTAAAAGTTCCCG	1	12	1
          ** *  *******
MAP Score: 4.45519

Motif 2
ATTTGTTTTTGTTGTATTTAAACAATACGTA	0	19	1
CTCAATAGTTGATGTATTCATCTGAAGGGTT	0	53	1
ATATAGGAAAGATTTATAAAATTTCATGCGG	0	93	1
GTTCGGGCGAGATTTTTAAAAGTTCCCGGCA	1	17	1
          ******** **
MAP Score: 1.49886

Motif 3
ATTGAGGCATACGTATTGTTTAAATACAACAAAA	0	25	0
GAAGGGTTGGGAGTAATATATAGGAAAGATTTAT	0	76	1
AGTAATATATAGGAAAGATTTATAAAATTTCATG	0	87	1
AAAATTTCATGCGGAATATTTAAAC         	0	110	1
ATAAAGTTGCCGGGAACTTTTAAAAATCTCGCCC	1	21	0
          * * *** **** *
MAP Score: 0.116298