AlignACE 3.0 10/20/99 AlignACE2 -i AG/AG_operons009_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944242505 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 AF0254 272 NADH oxidase (noxA-1) #1 AF0273 137 sarcosine oxidase, subunit alpha (soxA) #2 AF0274 300 sarcosine oxidase, subunit beta (soxB) #3 AF0396 154 A. fulgidus predicted coding region AF0396 #4 AF0400 84 NADH oxidase (noxA-3) #5 AF0422 138 uroporphyrin-III C-methyltransferase (cysG-1) #6 AF0727 97 cobalamin biosynthesis precorrin-2 methyltransferase (cbiL) #7 AF0871 63 glycerol-3-phosphate dehydrogenase (NAD(P)+) (gpsA) #8 AF0949_AF0950 177 AF0949: glutamine synthetase (glnA), AF0950: carbon monoxide dehydrogenase, iron sulfur subunit (cooF) #9 AF1241 81 glutamate-1-semialdehyde aminotransferase (hemL) #10 AF1324 89 carbohydrate kinase, FGGY family #11 AF1328 239 glycerol-3-phosphate dehydrogenase (glpA) #12 AF1427 23 A. fulgidus predicted coding region AF1427 #13 AF1428 143 A. fulgidus predicted coding region AF1428 #14 AF1753 39 lysophospholipase #15 AF1755 115 conserved hypothetical protein #16 AF1858 145 NADH oxidase (noxA-5) #17 AF2220 137 A. fulgidus predicted coding region AF2220 Motif 1 AACCAAAAGCAAAAATTTAAATTTATAGTGGA 1 22 0 TATCTTAAAGAAAAATTTAAATATCGTCAGTG 3 41 0 TGAAAATCCAAAAAATTTAAATAAAGTCAATC 6 40 0 TCCGTGACCAAAATCCTTAAATTGCTCGTTGC 0 71 1 TTTAATGGGAAAAAACTTAAATAAAATGA 9 7 0 CTCAGCAAGAAAACATTTAAAACGAATTGGAG 9 49 1 TACATTTTCGAAAAGTTTAAAAATACACGATG 11 184 0 TAAGCCTCAGAAAACCTTAAAAAATTCGGATT 0 239 1 TCTTTAAGATAAAAACTTAAAACTAATTTGCT 3 62 1 AAAAACTTAGGAAAGTTTAAATAAGCATTCTA 1 77 1 GCAAATTTCGAAATTCTTATATATTGCCTAAA 5 44 0 CTGGAGTATTAAAGCTTTAAACCTGAGTCGTT 10 25 1 AAAATGTGGGAAAGAGTTAAATTAAATTTTGC 0 25 0 TAATATTCTTATAAGTTTAAATATTCATCGAG 16 120 1 TTCATTCCAAATAATTTTAAATAAGTTGGCTC 17 103 1 AGATATTAATAAATTTTTACATTTTCGAAAAG 11 201 0 AATATTCACAAAAGGTTTATAACTGAAAGATT 16 80 1 TTGAGTTGCAAAATATTTATAATTTTCTACAA 10 59 0 ATCCTGACGGTAAGGTTTAAATACACTTAGAG 8 19 0 CTGCGAAAAATTTTAATCTTTTTTCTG 14 5 1 CTGTACGTCGGAAAATTTATATTGCAATATTG 3 119 1 TACAAAAAGCTAACGTTTATATTGTCTCCGTC 7 21 0 *** ******* MAP Score: 30.6601 Motif 2 GCTTCCACTATAAATTTAAATTTTTGCTTTTGGTTATTAAT 1 19 1 TCCTAAGTTTTTTATCTAAATTATTTGTTATTAATAACCAA 1 48 0 TTAGAATGCTTATTTAAACTTTCCTAAGTTTTTTATCTAAA 1 69 0 TCAGATTGACTTTATTTAAATTTTTTGGATTTTCAGTAAGA 6 37 1 TATTTGAGAATTGGTGAAGATTTTTCAGATTTACCTACGCT 8 93 1 TTCGATATATATTTTTTTGCATTCAAGGGGAT 8 155 0 TCATTTTATTTAAGTTTTTTCCCATTAAATGGGAAC 9 5 1 AGTTGCAAAATATTTATAATTTTCTACAATTAACGACTCAG 10 47 0 TGAGCGGAGATATTAATAAATTTTTACATTTTCGAAAAGTT 11 199 0 TTATAAACCTTTTGTGAATATTTCTTTTTCTGTTTCGATAG 16 61 0 AAAGATTTTATTTATTAATATTCTTATAAGTTTAAATATTC 16 105 1 AGTTGTCATATAGGTAAAAATTTTTCGGATTAATTCCGCTA 17 23 1 CCGAGCCAACTTATTTAAAATTATTTGGAATGAACTTCTCA 17 96 0 * * ** *** ** * MAP Score: 15.3524 Motif 3 GGGTTCGAATCCCACCCCCGGCGCTGAAACTTTGG 0 174 1 TTGGAGATGTCCATCCCGCCGGGCTTACATGTACG 13 81 1 CCTATCCCCTCCGCACTGCTACTGTGCCTC 3 5 1 AGGAGATAATCCACGCCATCGAGCTTGGCTACGAC 2 81 1 TCTTTATCACCCTTCCCTGCAGCGAGTATGTAAA 2 276 0 GGACCCCCGACTGCAGCGCTTATTATATGG 4 64 0 ACAGGCTTTTCTACGCCATCGTGCTTTCGGCAGCA 11 74 0 CGACGGCCTGCTAAGCCGTTGGGCGTTGCCCGCGT 0 139 1 CAGGCCGTCGCCTTACCGCTCGGCAACCCCGGCTC 0 114 0 AAACAACCTTCCTGTCCTTCACGCTTATCACCCCA 2 22 0 CCTTTCACCTCTGCAACAAGTATTT 1 122 0 *** ** * * *** MAP Score: 13.1172 Motif 4 AATTGCTCGTTGCGAAGAAAAGTTGAGCCGGGG 0 90 1 AAGTTGAGCCGGGGTTGCCGAGCGGTAAGGCGA 0 109 1 CCATCTTTGTGGCTCAGAAAAGCACCAAAGTTT 0 200 0 CCACAAAGATGGCACTGCTAAGCCTCAGAAAAC 0 221 1 TAAATTTATAGTGGAAGCTGAGCGATT 1 4 0 GTAAGGCCAGTGGGGTGATAAGCGTGAAGGACA 2 12 1 TCTCAAGGTCGTCGTAGCCAAGCTCGATGGCGT 2 93 0 GGGCTGCCTCTGCGTTGTTACGCCAATCTCATC 2 227 0 TCCCTGCAGCGAGTATGTAAAGCGGGACCGGAT 2 264 0 AAACGAATTGGAGAGAGCGAAGC 9 68 1 AAAGCACGATGGCGTAGAAAAGCCTGTTTGGGA 11 82 1 GGAGGGTGTTGAGCGGAGATATTA 11 225 0 TTGAATTTTGGGCGATGAGAAGTTCATTCCAAA 17 81 1 **** ** **** MAP Score: 12.9813 Motif 5 AGCCGGGGTTGCCGAGCGGTAAGGCGACGGCCTGCTA 0 115 1 GCGACGGCCTGCTAAGCCGTTGGGCGTTGCCCGCGTG 0 138 1 AAGCCGTTGGGCGTTGCCCGCGTGGGTTCGAATCCCA 0 151 1 CCAGTGGGGTGATAAGCGTGAAGGACAGGAAGGTTGT 2 18 1 ACAGGAAGGTTGTTTGCAGGTGTGAGGATCTGACCGA 2 42 1 GGTCGTCGTAGCCAAGCTCGATGGCGTGGATTATCTC 2 83 0 AGAAGACTGGCAAGAGCGTTGATGAGATTGGCGTAAC 2 207 1 CAGCGAGTATGTAAAGCGGGACCGGATTCACGGGCTG 2 254 0 CTTTACATACTCGCTGCAGGGAAGGGTGATAAAGA 2 275 1 CATATAATAAGCGCTGCAGTCGGGGGTCC 4 65 1 TTTGTTAAATTACCTGCAGGCAAGCGTAGGTAAATCT 8 119 0 CAGGTTAGGACACCAGCTGTATTGAGAATGATTTCAA 11 27 1 ATCGTGCTTTCGGCAGCATGCGTGGCTGTTGAAATCA 11 55 0 CGCATGCTGCCGAAAGCACGATGGCGTAGAAAAGCCT 11 70 1 CGATGGCGTAGAAAAGCCTGTTTGGGACCATTGAAAC 11 88 1 CTCAAAATCGCCAGAGCCTGCATGGCAGTGGGCATGC 11 137 1 TTGGCGTACATGTAAGCCCGGCGGGATGGACATCTCC 13 83 0 AAACACCGAAGATGAGCTGGATAGAATTTCAAAGGAA 15 64 0 * *** ** **** MAP Score: 12.0732 Motif 6 CAGGCCGTCGCCTTACCGCTCGGCAACCCCGGCTCAA 0 112 0 GGGTTCGAATCCCACCCCCGGCGCTGAAACTTTGGTG 0 174 1 CCTTTCACCTCTGCAACAAGTATTTTA 1 120 0 ACCTTCCTGTCCTTCACGCTTATCACCCCACTGGCCT 2 15 0 ATAATCCACGCCATCGAGCTTGGCTACGACGACCTTG 2 86 1 CCCGTGAATCCGGTCCCGCTTTACATACTCGCTGCAG 2 257 1 CCTATCCCCTCCGCACTGCTACTGTGCCTCTC 3 5 1 AGTTTTTTAACCTTCCCACAACTCCCCCTT 5 118 1 ACCATTGAAACTGTCCCGCATCCCTCAAAATCGCCAG 11 114 1 TTGGAGATGTCCATCCCGCCGGGCTTACATGTACGCC 13 81 1 CTTTGAAATTCTATCCAGCTCATCTTCGGTGTTTACC 15 67 1 ** ****** * * MAP Score: 11.3212 Motif 7 GTCGCCTTACCGCTCGGCAACCCCGGCTCAACTT 0 109 0 CCCACGCGGGCAACGCCCAACGGCTTAGCAGGCC 0 143 0 ACAAAGATGGCACTGCTAAGCCTCAGAAAACCTT 0 223 1 AATCGCTCAGCTTCCACTATAAAT 1 0 1 CAGATCCTCACACCTGCAAACAACCTTCCTGTCC 2 40 0 ATTATCTCCTCCTCGGTCAGATCCTCACACCTGC 2 57 0 CCAGTCGTTGCTCCGGTAAACCTCTTGAGGCTCT 2 123 0 TCTTTATCACCCTTCCCTGCAGCGAGTATGTAA 2 277 0 CCTATCCCCTCCGCACTGCTACTGTGCCTCTC 3 8 1 GGACCCCCGACTGCAGCGCTTATTATA 4 67 0 GTTTTTTAACCTTCCCACAACTCCCCCTT 5 119 1 TTTATATTGTCTCCGTCCAAATGCAGTT 7 4 0 AACTGTCCCGCATCCCTCAAAATCGCCAGAGCCT 11 122 1 TTATTAATATCTCCGCTCAACACCCTCC 11 221 1 * **** **** * MAP Score: 9.89221 Motif 8 TTGCTCGTTGCGAAGAAAAGTTGAGCCGGGGTTGCCG 0 92 1 AGCGGTAAGGCGACGGCCTGCTAAGCCGTTGGGCGTT 0 129 1 GCTGAAACTTTGGTGCTTTTCTGAGCCACAAAGATGG 0 196 1 GAGCCACAAAGATGGCACTGCTAAGCCTCAGAAAACC 0 218 1 CTGTAAGGCCAGTGGGGTGATAAGCGTGAAGGACAG 2 9 1 AGGATCTGACCGAGGAGGAGATAATCCACGCCATCGA 2 66 1 AGCTTGGCTACGACGACCTTGAGAGCCTCAAGAGGTT 2 102 1 ATGGGCCAGTCGTTGCTCCGGTAAACCTCTTGAGGCT 2 125 0 CACGGGCTGCCTCTGCGTTGTTACGCCAATCTCATCA 2 226 0 TGCTGCAACTCTAAACTCAGTTAAATA 6 80 0 TGCATTTGGACGGAGACAATATAAACGTTAGCTTTTT 7 13 1 GGCTTCAACTCTAAGTGTATTTAAACCTTACCGTCAG 8 11 1 CCGAAAGCACGATGGCGTAGAAAAGCCTGTTTGGGAC 11 79 1 ATCACTGTTTTGGCGTACATGTAAGCCCGGCGGGATG 13 92 0 GCTCTCGATGAATATTTAAACTTATAAGAATA 16 123 0 ** * * ****** MAP Score: 9.43629 Motif 9 GTTGAGCCGGGGTTGCCGAGCGGTAAGGCGACG 0 111 1 AGCCGTTGGGCGTTGCCCGCGTGGGTTCGAATC 0 152 1 GGTTCGAATCCCACCCCCGGCGCTGAAACTTTG 0 175 1 AGGAGATAATCCACGCCATCGAGCTTGGCTACG 2 81 1 TCTTTATCACCCTTCCCTGCAGCGAGTATGTAA 2 277 0 CCTATCCCCTCCGCACTGCTACTG 3 1 1 TGTATTTAAACCTTACCGTCAGGATACATGAGG 8 26 1 ATTTACCTACGCTTGCCTGCAGGTAATTTAACA 8 121 1 ATTTCAACAGCCACGCATGCTGCCGAAAGCACG 11 57 1 ACAGGCTTTTCTACGCCATCGTGCTTTCGGCAG 11 76 0 CAGTTTCAATGGTCCCAAACAGGCTTTTCTACG 11 94 0 CCAGAACACAGCATGCCCACTGCCATGCAGGCT 11 151 0 TTGGAGATGTCCATCCCGCCGGGCTTACATGTA 13 81 1 TATGACAACTACTCCCCTACGGG 17 0 0 ******* * ** MAP Score: 6.88924 Motif 10 GAAGAAAAGTTGAGCCGGGGTTGCCGAGCGGTAAGGCGAC 0 103 1 CGGTAAGGCGACGGCCTGCTAAGCCGTTGGGCGTTGCCCG 0 131 1 CCAAAGTTTCAGCGCCGGGGGTGGGATTCGAACCCACGCG 0 169 0 GAGGCTTAGCAGTGCCATCTTTGTGGCTCAGAAAAGCACC 0 207 0 CTGTAAGGCCAGTGGGGTGATAAGCGTGAAGGAC 2 4 1 GATAAGCGTGAAGGACAGGAAGGTTGTTTGCAGGTGTGAG 2 28 1 GGTGTGAGGATCTGACCGAGGAGGAGATAATCCACGCCAT 2 60 1 CGGAGCAACGACTGGCCCATGTCAGGGTAAGAGCTGTCTG 2 142 1 CTAAGAATACTCAGCCAGAAGACTGGCAAGAGCGTTGATG 2 191 1 CGCTTTACATACTCGCTGCAGGGAAGGGTGATAAAGA 2 273 1 ATCGTCAGTGAGAGGCACAGTAGCAGTGCGGAGGGGATAG 3 11 0 AATGATTTCAACAGCCACGCATGCTGCCGAAAGCACGATG 11 53 1 CAAAATCGCCAGAGCCTGCATGGCAGTGGGCATGCTGTGT 11 139 1 GATTTAATTATGACCCGGTGGACATGTCCGCGATTTTTAC 13 18 1 GGCGTACATGTAAGCCCGGCGGGATGGACATCTCCAAAGA 13 78 0 AATTCCGCTAAATGCCTTCTGTGAGGTTTGAATTTTGGGC 17 54 1 ** *** * * * * * MAP Score: 6.37457 Motif 11 CCGTCGCCTTACCGCTCGGCAACCCCGGCTCAAC 0 111 0 GCAACGCCCAACGGCTTAGCAGGCCGTCGCCTTA 0 134 0 AATCGCTCAGCTTCCACTATAAATT 1 1 1 TGAATCCGGTCCCGCTTTACATACTCGCTGCAGG 2 261 1 AATGATTTCAACAGCCACGCATGCTGCCGAAAGC 11 53 1 GACCATTGAAACTGTCCCGCATCCCTCAAAATCG 11 113 1 CAGCATGCCCACTGCCATGCAGGCTCTGGCGATT 11 142 0 TATTAATATCTCCGCTCAACACCCTCC 11 222 1 AGATGTCCATCCCGCCGGGCTTACATGTACGCCA 13 85 1 ** *** *** ** MAP Score: 6.15764 Motif 12 CCCGGCTCAACTTTTCTTCGCAACGAGCAATTTAAG 0 86 0 AAAGCACCAAAGTTTCAGCGCCGGGGGTGGGATTCG 0 179 0 GTCCTTCACGCTTATCACCCCACTGGCCTTACAG 2 8 0 CGAGGAGGAGATAATCCACGCCATCGAGCTTGGCTA 2 76 1 TTACGCCAATCTCATCAACGCTCTTGCCAGTCTTCT 2 207 0 ATGAGATTGGCGTAACAACGCAGAGGCAGCCCGTGA 2 228 1 AGCAAGCCATATAATAAGCGCTGCAGTCGGGGGTCC 4 58 1 TGCCCCTAATCTTCGCTGGAGTATTAAAGCT 10 5 1 CCCAAACAGGCTTTTCTACGCCATCGTGCTTTCGGC 11 78 0 TCCCGCATCCCTCAAAATCGCCAGAGCCTGCATGGC 11 127 1 TTGGAATGAACTTCTCATCGCCCAAAATTCAAACCT 17 77 0 ** **** *** * MAP Score: 5.43556