AlignACE 3.0 10/20/99 AlignACE2 -i AG/AG_operons011_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944242650 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 AF0079 69 A. fulgidus predicted coding region AF0079 #1 AF0080 27 acetylornithine aminotransferase (argD-1) #2 AF0667 69 A. fulgidus predicted coding region AF0667 #3 AF0669 35 4-oxalocrotonate tautomerase, putative #4 AF0700 41 aspartate kinase (lysC) #5 AF0703 38 A. fulgidus predicted coding region AF0703 #6 AF0909 31 dihydrodipicolinate reductase (dapB) #7 AF0911 24 SSU ribosomal protein S17E (rps17E) #8 AF0912 51 A. fulgidus predicted coding region AF0912 #9 AF0913 144 A. fulgidus predicted coding region AF0913 #10 AF1147 65 glutamate N-acetyltransferase (argJ) #11 AF1241 81 glutamate-1-semialdehyde aminotransferase (hemL) #12 AF1280 272 acetylglutamate kinase (argB) #13 AF1495 73 conserved hypothetical protein #14 AF1506 30 aspartate-semialdehyde dehydrogenase (asd) #15 AF1507 62 A. fulgidus predicted coding region AF1507 #16 AF1508 61 A. fulgidus predicted coding region AF1508 #17 AF1510 24 long-chain-fatty-acid--CoA ligase (fadD-6) #18 AF1512 71 conserved hypothetical protein #19 AF1513 257 A. fulgidus predicted coding region AF1513 #20 AF1514 199 A. fulgidus predicted coding region AF1514 #21 AF1610 300 conserved hypothetical protein #22 AF1612 63 cationic amino acid transporter (cat-1) #23 AF1814 83 A. fulgidus predicted coding region AF1814 #24 AF1815 36 acetylornithine aminotransferase (argD-2) #25 AF2071 60 N-acetyl-gamma-glutamyl-phosphate reductase (argC) #26 AF2252 78 argininosuccinate synthetase (argG) #27 AF2327 72 shikimate 5-dehydrogenase (aroE) Motif 1 AAAAAGAAAGGAAAACTTTAAATAGTAATTAT 19 221 1 TAAAATCGTCGAAAAATTTAAATGTCAAAGGA 21 139 1 TTCTCAGCAAGAAAACATTTAAAACGAATTGG 11 47 1 ATTTAATGGGAAAAAACTTAAATAAAATGA 11 8 0 AAAATTTTCAGAAAGTTTTTAATTTCACCTTC 10 19 0 GAAACATGTCGCAAAATTTAAATACTTTGCTA 2 16 1 AGGTTACCGTAAAAAATTTTAAGGTATAAGTT 0 36 1 AGGAAAAATATTTAATGATTTATTT 24 3 1 GTGGGTATATGCAAAATTTTAAATTTTCGGTT 9 37 1 GAGGAAAAGGTTAAGAGGCAAAATA 25 45 0 TTTTTTGAAAGAAAATTTTAAGATTAATTTGC 8 17 1 GTTTAATCTCAAAAGATTTAAACCTCTCCGCA 26 44 1 ATTGCTGGAGGCAAGTGTTAAAAACTGCCTGG 12 207 0 TTGAGATTAAACAAAAGTTAAAAAACTTCCTG 26 24 0 AGTAGCCTTGAAAAATCTTTAGATTGGAGCGG 12 111 0 ACCTTTCTGAACAAGCTTTAAATACATCCGGC 13 23 0 AAAAACGTTTTATTACCCAATT 3 0 1 ATCCCAAATAAAAAGCTTTATAAAAACAAACA 20 26 0 GGAAAAAATTTTGCTGAGTAATT 1 14 0 CTCAGCAAGATTTATATTTCTTGCTT 4 4 1 TAAAAGCGGAAAAAGGCTTTTATATATTATAA 20 171 1 AAAACTTTCTGAAAATTTTAATTTACCTGCTC 10 32 1 ACGAGGGGTTAAAAACCTTTGACGTCATCAAA 9 110 0 ***** ***** MAP Score: 29.4216 Motif 2 ACCACCGACACTCAAAAAGGTTACCGTAAAA 0 19 1 ACTTAATTACTCAGCAAAATTTTTTCC 1 9 1 CTCAGCAAGATTTATATTTCT 4 0 1 CCGTTTTTATCTCCGCCGATTTAAAGTTCAG 5 12 0 ACTGGGAGTTCCGCAAATTAATCTTAAAA 8 32 0 AATTAAAATTTTCAGAAAGTTTTTAATTTCA 10 24 0 TGGGAACATTCTCAGCAAGAAAACATTTAAA 11 39 1 CGGGTTCAAATCCCGCCGGGTCCGCTCCAAT 12 90 1 TTTACAATTGCTCAGCAGATTGCCTGAGCCA 12 156 1 ATTTTGGGAATCCAGGCAGTTTTTAACACTT 12 196 1 TTAAAGCTTGTTCAGAAAGGTATTATAGCAG 13 34 1 CTTTATTATTCTCAACCAGATTGTTTCT 18 53 1 TGAGATTATTTCCAGCCAGATTCGTGTGGTT 21 173 1 AGCCCTACTTTTCCACCAATTTTGGTGGTGG 23 12 0 ATAAATATTCCTCCGTCAGCTAAATTTGTTT 23 45 1 CTTTCGCCATCTCAGAAAACTCTTTATTTTG 25 21 1 CCTCTGAAAACCCAGGAAGTTTTTTAACTTT 26 12 1 TTTGTTTAATCTCAAAAGATTTAAACCTCTC 26 41 1 ********* * MAP Score: 13.0309 Motif 3 ACTTAATTACTCAGCAAAATTTTTTC 1 4 1 GTGAAATTAAAAACTTTCTGAAAATTTTAATT 10 23 1 ATTTTAATTTACCTGCTCAGAATTGGTTC 10 46 1 TTAAATGGGAACATTCTCAGCAAGAAAACATT 11 34 1 GCTTCGCTCTCTCCAATTCGTTTTA 11 66 0 TCAAGGCTACTACCATTCAGCAGCTTTACAAT 12 132 1 GCAGCTTTACAATTGCTCAGCAGATTGCCTGA 12 151 1 CCTGCTATAATACCTTTCTGAACAAGCTTTAA 13 34 0 GCGTGCGCCTTACCGCTCGGCAACCCCGGCCT 19 34 0 GCGAACGCCCACACGCTCTCCAGGCGTGCGCC 19 57 0 AAAAGTTGGAAAACGCTCCGAATTTGGATATT 21 241 1 AAAAGATTTAAACCTCTCCGCATGACGGGATT 26 54 1 GATAAATACTTACCGCTCCGAAAACCCTTTTT 27 28 1 ** ***** *** MAP Score: 12.6112 Motif 4 ACCACCGACACTCAAAAAGGTTACCGTAAA 0 19 1 TGAAACATATTTCAAATAGGAGGTGAGAAT 2 49 1 ACCTGAACTTTAAATCGGCGGAGATAAA 5 8 1 ATCGGCGGAGATAAAAACGGTTGCG 5 23 1 AAAATTTTCTTTCAAAAAAGAAATTA 8 6 0 ATACCCACTTCTTAAAAAGGAGGTTAAGCG 9 15 0 GCCTGGATTCCCAAAATCGGCGTGGATGGC 12 183 0 GATTAAAAAAAGAGCCGGATGT 13 2 1 TTAAAGCTTGTTCAGAAAGGTATTATAGCA 13 34 1 CAGGGGGCAATTTAAAAAAG 14 0 0 CTGTGGAATTTCCAAAAAAGCAAGCATAAA 19 159 1 ATAATAATCAATCAAAAAAGAAAGGAAAAC 19 207 1 GTTTATACTTTTAAAAAAAGGCGTTTTTAG 20 83 0 ACAGAAATTTTCCAAAACAGCCTTTTGATA 21 73 1 GATTTGAAAATCCAAAATGGAAAAGAGA 22 8 0 ATTTTGGATTTTCAAATCGGCAAGCTTATA 22 20 1 TAAGTATTTATCCAAAGCGGCAGAGTATCG 27 10 0 ********** MAP Score: 11.1565 Motif 5 TTGAAACATGTCGCAAAATTTAAATACTTTG 2 14 1 TTAAAAACTTTCTGAAAATTTTAATTTACCT 10 29 1 GGTAGTAGCCTTGAAAAATCTTTAGATTGGA 12 115 0 CTGCCTGGATTCCCAAAATCGGCGTGGATGG 12 184 0 AGCAATGCGGTCTGATAATCCTTAAGTATCC 12 233 1 TGCTTGCTTTTTTGGAAATTCCACAGAAGTA 19 154 0 TAATTATTTATCGGGAAATTC 19 246 1 CTTTTATAAGTTTGAAAACCGGAAATCGCTT 20 146 0 AAAGGCTGTTTTGGAAAATTTCTGTTATATT 21 67 0 TTTAAAATCGTCGAAAAATTTAAATGTCAAA 21 137 1 GGCATAAAAGTTGGAAAACGCTCCGAATTTG 21 236 1 AGCTTGCCGATTTGAAAATCCAAAATGGAAA 22 15 0 TTTCGCCATCTCAGAAAACTCTTTATTTTGC 25 22 1 AACCTCTGAAAACCCAGGAAGTTTT 26 4 1 TAAACAAAAGTTAAAAAACTTCCTGGGTTTT 26 18 0 TACTTACCGCTCCGAAAACCCTTTTTTACTG 27 34 1 ** ******** MAP Score: 8.84734 Motif 6 CTTCCCGCTTAACCTCCTTTTTAAGA 9 1 1 TAAACACCAATGCCCCCCTACCCTTAAGGGCCCGT 12 12 1 TATCCATGCTGAGCCACGGGCCCTTAAGGGTAGGG 12 27 0 CTTTTTTAAATTGCCCCCTGTCCTTCAACC 14 10 1 TGGCTGGAAATAATCTCATGTCCTTTGACATTTAA 21 156 0 GGCAAGCTTATATCTCCGTAACCTTACAAGCCCTA 22 38 1 ACTCTTTATTTTGCCTCTTAACCTTTTCCTC 25 39 1 AAACCCTTTTTTACTGCATGACCACTATGAGGC 27 49 1 * ** * ** **** MAP Score: 5.95809 Motif 7 ATTTTGGATTTTCAAATCGGCAAGCTTATATCTC 22 20 1 TAAGTATTTATCCAAAGCGGCAGAGTATCG 27 6 0 AGGCCGGGGTTGCCGAGCGGTAAGGCGCACGCCT 19 34 1 AAAAAGGGTTTTCGGAGCGGTAAGTATTTATCCA 27 26 0 GATTTGAAAATCCAAAATGGAAAAGAGA 22 4 0 TTCAATTCGGAAGGTGAAATTAAA 10 0 1 TTTATAAGTTTGAAAACCGGAAATCGCTTAAGAA 20 141 0 AGCGACGGCCTTCTAAGCCGTAGATCGCGGGTTC 12 63 1 TGGCTGTTGAATCTTACCGGAAAATTACTTCTGT 19 129 1 TATTAATTTTTAATAAATGGAAAGATTTATCATT 16 17 1 TTTCAAACTTATAAAAGCGGAAAAAGGCTTTTAT 20 160 1 AAATAGTAATTATTTATCGGGAAATTC 19 240 1 TTTAAACAGTTTTCATACGGGAAAATTCGAGCTA 21 109 0 ATTGTAAAGCTGCTGAATGGTAGTAGCCTTGAAA 12 130 0 TTAAAAAGGAGGTTAAGCGGGAAG 9 0 0 * * ** *** *** MAP Score: 4.31222 Motif 8 GCAATTAGTACCACCGACACTCAAAAAGGTT 0 6 1 TATAAACACCAATGCCCCCCTACCCTTAAGGGCCC 12 10 1 CGCGGGTTCAAATCCCGCCGGGTCCGCTCCAATCT 12 88 1 ACAAGCTTTAAATACATCCGGCTCTTTTTTTAATC 13 10 0 CTTTTTTAAATTGCCCCCTGTCCTTCAACC 14 8 1 CGTGGGTTCGAATCCCACCCCCGGCGCTGTTGTAT 19 92 1 TCGGCAAGCTTATATCTCCGTAACCTTACAAGCCC 22 36 1 GCTATATAAATATTCCTCCGTCAGCTAAATTTGTT 23 40 1 *** ** *** ** MAP Score: 4.1946 Motif 9 AAAGTGTGTTGGCAATTGGGTAATAAAA 3 17 0 CGGGCCCTTAAGGGTAGGGGGGCATTGGTGTTTATA 12 8 0 CCGCGATCTACGGCTTAGAAGGCCGTCGCTCTATCCAT 12 55 0 TAGATTGGAGCGGACCCGGCGGGATTTGAACCCGCGAT 12 86 0 TTCCCAAAATCGGCGTGGATGGCTCAGGCAATCTGCTG 12 168 0 GGTTGAAGGACAGGGGGCAATTTAAAAAAG 14 7 0 ATTCAGCCCCGGCTATGAGGCGTTAGGCCGGGGTTG 19 8 1 CCGGGGTTGCCGAGCGGTAAGGCGCACGCCTGGAGAGC 19 37 1 GCACGCCTGGAGAGCGTGTGGGCGTTCGCCCGCGTGGG 19 60 1 AGCCAAGATACAACAGCGCCGGGGGTGGGATTCGAACC 19 96 0 AGGAGGTGAGAAAAAATGGAGGGTGATGGCG 21 279 1 TAGGGCTTGTAAGGTTACGGAGATATAAG 22 44 0 **** * *** * * MAP Score: 3.58172 Motif 10 AAAAACGTTTTATTACCCAATT 3 0 1 CGCAACCGTTTTTATCTCCGCCGA 5 24 0 CTTCCCGCTTAACCTCCTTTTTAAGAAGTGGG 9 10 1 TTGATGACGTCAAAGGTTTTTAACCCCTCGTA 9 111 1 TAAAATTTTCAGAAAGTTTTTAATTTCACCTT 10 20 0 TTGGGAATCCAGGCAGTTTTTAACACTTGCCT 12 199 1 TACCTTTCTGAACAAGCTTTAAATACATCCGG 13 24 0 CACAAACAACCAGAAGATTTATCTTTAGCCTC 15 23 1 ACGAATAAAACATGAGTTTTTATGCTTGCTTT 19 175 0 AATCCCAAATAAAAAGCTTTATAAAAACAAAC 20 27 0 CTTTTAAAAAAAGGCGTTTTTAGCGAGAAATA 20 74 0 ATAAACTCCACAGTAGTTTTTTGCTTAAGTAG 20 107 1 TTTTTTGCTTAAGTAGTTTTCTTAAGCGATTT 20 123 1 TAAAAGCGGAAAAAGGCTTTTATATATTATAA 20 171 1 TTTGGTTGAAAACTGGATTTTTAACTCCTTTT 21 27 0 CGACGATTTTAAACAGTTTTCATACGGGAAAA 21 118 0 GAGGCAAAATAAAGAGTTTTCTGAGATGGCGA 25 24 0 CTGAAAACCCAGGAAGTTTTTTAACTTTTGTT 26 15 1 TGTTTAATCTCAAAAGATTTAAACCTCTCCGC 26 43 1 TACCGCTCCGAAAACCCTTTTTTACTGCATGA 27 38 1 *** ** ***** MAP Score: 1.34299