AlignACE 3.0 10/20/99 AlignACE2 -i AG/AG_operons013_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944242745 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 AF0212 25 histidinol dehydrogenase (hisD) #1 AF0372 300 conserved hypothetical protein #2 AF0409 74 aspartate aminotransferase (aspB-4) #3 AF0590 185 ATP phosphoribosyltransferase (hisG) #4 AF0818 102 acylphosphatase (acyP) #5 AF0986 30 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (hisA-2) #6 AF0987 109 conserved hypothetical protein #7 AF1622 78 leucine responsive regulatory protein (lrp) #8 AF1948 152 A. fulgidus predicted coding region AF1948 #9 AF1950 54 phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase (hisIE) #10 AF2002 88 histidinol-phosphate aminotransferase (hisC-1) #11 AF2004 48 group II decarboxylase #12 AF2037 54 translation initiation factor eIF-2B, subunit delta (eif2BD) #13 AF2128 104 riboflavin synthase, subunit beta (ribE) #14 AF2265 48 imidazoleglycerol-phosphate synthase, subunit H (hisH) #15 AF2366 300 aspartate aminotransferase (aspB-1) Motif 1 ACGTTCGTGATCGACCCCTCTTTCAGGCTAATTGCGC 1 160 1 ACCTTGACCTTTTCGTTCTGCATCATGGCTTTAGTGT 3 32 0 AACGAAAAGGTCAAGGTCTACTTCCTGACGGTCATCT 3 52 1 TCTCCGTCTTTCCAAGCCTGTATCCAGCGGTAATTAA 3 111 0 ATTGAAACCATCAATCCCTACCTCCGGACAAAGCTAT 6 57 1 ACAAAACTTTTCGAAACCTATTTAAAGAAAAAGTTAA 8 116 1 TTTGAGAGTTCTGCACACTTCCTCAGCAACCTC 10 6 0 TCTTAACCTCCTCAATGCTCTTTCCCGGAATGTATTT 10 41 0 GTTCCCACCTCTGCTTCAGGTTAAAATTCT 12 3 1 AAAGTAGGGACTACAAGCTTCATAAAGCTAACTTTAA 15 37 1 GGTTTGGATTCTGCAAGCTTTTTCCTCAATTTTCCTT 15 73 0 TTCTGCCAATCTCAGCTCTTTCTCCACCTTCTCTGTA 15 157 0 TCGGCTACCTCTCCCTTCTTTGTCAGTTCGAGAGTTC 15 191 0 ** * ** * *** * MAP Score: 11.6177 Motif 2 TCTTAGTCGCCAAACTTTTTTAACACCTGTGCC 1 265 1 GCAAGAACCTCAAGCTTCTGATATTTACGTTAT 2 10 1 TTGACCACCCCAAGCTGGTTTTTAAGCAG 3 166 1 GCTATGCAGGCAAACTATTTATATGATTTCAAT 4 17 1 ATTGATAAATCAATCTTCATTAATCT 6 3 0 ACTATTTTGAAAAACTTTTTATTGATAAATCAA 6 23 0 ACCTCCGGACAAAGCTATTTATAAGTGATTTAT 6 76 1 AAAACTGATAATAAATCACTTAT 6 96 0 AATTACTCCCAAAACAAATTTTATATATGTTGG 7 27 0 AAACTTTTCGAAACCTATTTAAAGAAAAAGTTA 8 119 1 TACAACACAAAAACCTATTTTTACCACCCGGCC 9 21 1 TCGAGTAGAACAACCTTAATTAATCCTTTTTCT 14 13 1 GTAGGGACTACAAGCTTCATAAAGCTAACTTTA 15 40 1 CAAACAAAACCAAACACCTTTAAATAACCCACT 15 262 1 *** ** ***** MAP Score: 10.4579 Motif 3 TCAGGCCGCTGAGATAAAGGTAGTTGAGAAG 1 128 1 ATTGCGCCAGGGGGAAAAGTAGCCCAAGAAT 1 190 1 TACGTTATTCGGGTAAAAGTTGATATATTCG 2 35 1 CATGATGCAGAACGAAAAGGTCAAGGTCTAC 3 42 1 TATATACCGCAGGCAAAAGGTGGGGTT 4 85 1 TAAGGAGTGGGAAGAAAAGGTTAAAAAA 5 7 0 TTGATTTATCAATAAAAAGTTTTTCAAAATA 6 23 1 AACCTATTTAAAGAAAAAGTTAAAAATTTTT 8 130 1 AATACATTCCGGGAAAGAGCATTGAGGAGGT 10 42 1 GCATTGAGGAGGTTAAGAGGAAGTACGGCCT 10 60 1 GCAAGGGCTTGAGAAAAAGGATTAATTAAGG 14 26 0 TCTTCCTTTGAGAGAAAAGTAGGGACTACAA 15 22 1 AGGAAAATTGAGGAAAAAGCTTGCAGAATCC 15 74 1 AGAGAAGGTGGAGAAAGAGCTGAGATTGGCA 15 160 1 *** ******* MAP Score: 8.81916 Motif 4 TTATAATCGCGGGAGTGATGATTAGGGATAAAACGTA 1 12 1 CTGAGATAAAGGTAGTTGAGAAGAACGTTCGTGATCG 1 136 1 CAAGAATCATGGCGGTGATGAAAACCGCCGAGGAGTT 1 214 1 AAACCGCCGAGGAGTTTCTTAGCATATCACTCTTAGT 1 235 1 GCGATTTGTTGGAGCTTTCGAATATATCAACTTTTAC 2 47 0 ATGGAAAATTGGAGGTTTAGGGAAGTCTAAAGTATGA 8 70 0 AAGTTTTGTGGGCTTTTAATGGAAAATTGGAGGTTTA 8 88 0 GAGGTTGCTGAGGAAGTGTGCAGAACT 10 0 1 AGAGCATTGAGGAGGTTAAGAGGAAGTACGGCCTTGA 10 57 1 AATAACTGACGGAGATTCTTGTCAGGTGGTTTCAA 13 79 1 CATAGTGTCTGGTGATGCAGAGTAATTTGCGGTTTGG 15 103 0 GTAAACTCCTGAAGTTGCATAGTGTCTGGTGATGCAG 15 120 0 CGACATTTTTGGAGTTGTGTAGTATCTGACACCATCC 15 225 1 AAAGGTGTTTGGTTTTGTTTGGGATGGTGTCAGATAC 15 246 0 TGGTTTTGTGTGGGGAGTGGGTTATTTA 15 282 0 ** * ** *** * * MAP Score: 8.24102 Motif 5 GCTTTAAGTAGGCGGGTGGAATAAA 0 1 0 GATTATAATCGCGGGAGTGATGATTAGGGATAA 1 4 1 AACGTAGGCAACAGCGCAGGAAACGAGGGGCAGAAGCCA 1 43 1 GGCCGCTGAGATAAAGGTAGTTGAGAAGAACGTTCGTGA 1 131 1 TTTCAGGCTAATTGCGCCAGGGGGAAAAGTAGCCCAAGA 1 180 1 AAGTAGCCCAAGAATCATGGCGGTGATGAAAACCGCCGA 1 206 1 CACTAAAGCCATGATGCAGAACGAAAAGGTCAAGGTCTA 3 33 1 ACAGGCTTGGAAAGACGGAGAGGGGATACCTCATTGACG 3 127 1 CTTAAGGAGTGGGAAGAAAAGGTTAAAAAA 5 8 0 GCCTTAAATTGGCCGGGTGGTAAAAATAGGTTTTTG 9 28 0 GGGAAAGAGCATTGAGGAGGTTAAGAGGAAGTACGGCCT 10 52 1 CGCAAGGGCTTGAGAAAAAGGATTAATTAAGG 14 26 0 GGAGTTTACTACAGAGAAGGTGGAGAAAGAGCTGAGATT 15 148 1 GAACTCTCGAACTGACAAAGAAGGGAGAGGTAGCCGACA 15 191 1 * * * ** * ** ** MAP Score: 8.07893 Motif 6 TTTATTCCACCCGCCTACTTA 0 1 1 CCTCGGCGGTTTTCATCACCGCCATGATTC 1 217 0 CGCCAAACTTTTTTAACACCTGTGCCAAAA 1 272 1 GCTTATAAAACCCACCGCTTTA 3 2 1 TTTTTTAACCTTTTCTTCCC 5 0 1 CTTTTCATTTTTTAAAATCAGTGGACTTT 8 9 1 CCACAAAACTTTTCGAAACCTATTTAAAGA 8 114 1 ATTCTATTTTTTACAACACAAAAACCT 9 7 1 AAAAACCTATTTTTACCACCCGGCCAATTT 9 29 1 ATTCAAAAAATTTTAAAACCA 13 1 0 ATCTCAGCTCTTTCTCCACCTTCTCTGTAG 15 156 0 ********** MAP Score: 7.59065 Motif 7 GGCACAGGTGTTAAAAAAGTTTGGCGACTAAG 1 266 0 TTTCAATTCGTTCGAAAATATTCATACAAAAG 4 43 1 AATAACTATTTTGAAAAACTTTTTATTGATAA 6 28 0 TTAAATAGGTTTCGAAAAGTTTTGTGGGCTTT 8 109 0 TAAAGAAAAAGTTAAAAATTTTTC 8 138 1 TTTTCAAAGGTTAAAGAATTTTAACCTGAAGC 12 22 0 TTCTTTAACCTTTGAAAAAATTGAACAC 12 36 1 ATAATAAAAATTCAAAAAATTTTAAAACCA 13 8 0 ** ***** *** MAP Score: 7.44755 Motif 8 GTTCCCACCTCTGCTTCAGGTTAAAATT 12 7 1 TTCTCAACTACCTTTATCTCAGCGGCCTGAT 1 127 0 CTTAATTAATCCTTTTTCTCAAGCCCTTGCG 14 27 1 TTTTTTAACCTTTTCTTCCCACTCCTTAA 5 8 1 ATGTCGGCTACCTCTCCCTTCTTTGTCAGTT 15 200 0 ATTCTGCAAGCTTTTTCCTCAATTTTCCTTT 15 72 0 GTAGTCCCTACTTTTCTCTCAAAGGAAGACT 15 20 0 TGAGGTATCCCCTCTCCGTCTTTCCAAGCCT 3 129 0 TAGACCTTGACCTTTTCGTTCTGCATCATGG 3 41 0 GCCAATCTCAGCTCTTTCTCCACCTTCTCTG 15 159 0 TCGTGATCGACCCCTCTTTCAGGCTAATTGC 1 164 1 AAATTTTTAACTTTTTCTTTAAATAGGTTTC 8 128 0 AACCCCACCTTTTGCCTGCGGTATATAAG 4 83 0 ***** ***** MAP Score: 6.66938 Motif 9 TTTATTCCACCCGCCTACTTAA 0 0 1 CGAACGTTCTTCTCAACTACCTTTATCTCAGC 1 135 0 GAAGAACGTTCGTGATCGACCCCTCTTTCAGG 1 155 1 TCGCCAAACTTTTTTAACACCTGTGCCAAAAC 1 271 1 ACCTCATTGACGTTGACCACCCCAAGCTGGTT 3 154 1 TTTTTTAACCTTTTCTTCCCACTCCTTAAG 5 8 1 AAAATCATACTTTAGACTTCCCTAAACCTCCA 8 66 1 CAAAAACCTATTTTTACCACCCGGCCAATTTA 9 28 1 CCGTACTTCCTCTTAACCTCCTCAATGCTCTT 10 56 0 TTGAAACCACCTGACAAGAATC 13 92 0 TTAAGGTTGTTCTACTCGACCC 14 0 0 AATCTCAGCTCTTTCTCCACCTTCTCTGTAGT 15 155 0 *** ******* MAP Score: 6.50186 Motif 10 GGAAGTACGGCCTTGAAAGA 10 78 1 ATTCTTTAACCTTTGAAAAAATTGAACAC 12 35 1 CGCAAGGGCTTGAGAAAAAGGATTAAT 14 31 0 CAGAGTCTTCCTTTGAGAGAAAAGTAGGGA 15 17 1 ACGTTCCGAAGTTCGAAAATCATACTTTAG 8 51 1 ATTTCAATTCGTTCGAAAATATTCATACAA 4 42 1 TTCTTTGTCAGTTCGAGAGTTCTGCCAATC 15 183 0 TCAATAACTATTTTGAAAAACTTTTTATTG 6 32 0 CTGACGGTCATCTTGAAAAGCCAATCTGGG 3 76 1 CCGGAATGTATTTTGAGAGTTCTGCACACT 10 24 0 TTTAAATAGGTTTCGAAAAGTTTTGTGGGC 8 112 0 CTGGATACAGGCTTGGAAAGACGGAGAGGG 3 121 1 GGCAAAACCTCGGAAAAGTGTAATAAA 11 31 0 ATAAAATTTGTTTTGGGAGTAATTTTAAAT 7 36 1 CCTCAATTTTCCTTTAAAGTTAGCTTTATG 15 57 0 TGGTTTTAAAATTTTTTGAATT 13 2 1 CTTTTCATTTTTTAAAATCAGTGGACTT 8 8 1 ********** MAP Score: 3.09032 Motif 11 GTTTTTGTGTTGTAAAAAATAGAAT 9 5 0 CTCTGCTTCAGGTTAAAATTCTTTAACCTT 12 18 1 GTCCACTGATTTTAAAAAATGAAAAG 8 6 0 TAAAGAAAAAGTTAAAAATTTTTC 8 138 1 TGGTTTTAAAATTTTTTGAATTT 13 3 1 TTGGCCGGGTGGTAAAAATAGGTTTTTGTG 9 26 0 TTGGCACAGGTGTTAAAAAAGTTTGGCGAC 1 270 0 CTCGGAAAAGTGTAATAAATAACTAACTAA 11 20 0 GGGAAGAAAAGGTTAAAAAA 5 0 0 CTTTAACCTTTGAAAAAATTGAACAC 12 38 1 CCGTCAGTTATTTAATAATTTAGGGATTCG 13 61 0 AATAAAAAGTTTTTCAAAATAGTTATTGAA 6 33 1 CGTGTGAACTTGTTAAAAGTCCACTGATTT 8 24 0 ********** MAP Score: 1.58543 Motif 12 TTTATTCCACCCGCCTACTTAAAGC 0 2 1 GTTTTATCCCTAATCATCACTCCCGCGATTATAA 1 12 0 TGATGGCTTCTGCCCCTCGTTTCCTGCGCTGTTG 1 51 0 TCAACTACCTTTATCTCAGCGGCCTGATTCTGCT 1 121 0 TCACGAACGTTCTTCTCAACTACCTTTATCTCAG 1 136 0 AGAACGTTCGTGATCGACCCCTCTTTCAGGCTAA 1 157 1 TCCTCGGCGGTTTTCATCACCGCCATGATTCTTG 1 214 0 GCTTATAAAACCCACCGCTTTAACAC 3 2 1 CCAGATTGGCTTTTCAAGATGACCGTCAGGAAGT 3 71 0 TACTTTAGACTTCCCTAAACCTCCAATTTTCCAT 8 73 1 AAAACCTATTTTTACCACCCGGCCAATTTAAGGC 9 30 1 ATTTTGAGAGTTCTGCACACTTCCTCAGCAACCT 10 11 0 AGGCCGTACTTCCTCTTAACCTCCTCAATGCTCT 10 57 0 GTTCCCACCTCTGCTTCAGGTTAAA 12 1 1 TAATTAAGGTTGTTCTACTCGACCC 14 1 0 CACCTTTAAATAACCCACTCCCCACACAAAACCA 15 276 1 * *** ** ** ** MAP Score: 0.550848