AlignACE 3.0 10/20/99 AlignACE2 -i AG/AG_operons014_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944242817 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 AF1127 213 LSU ribosomal protein L18E (rpl18E) #1 AF1131 75 DNA-directed RNA polymerase, subunit K (rpoK) #2 AF1132 108 enolase (eno) #3 AF2285 104 SSU ribosomal protein S13P (rps13P) #4 AF2287 80 carotenoid biosynthetic gene ERWCRTS, putative #5 AF2289 216 mevalonate kinase (mvk) #6 AF2310 46 conserved hypothetical protein Motif 1 TCAAAACTACGCTGAGGTGTAGTTGATATG 0 96 1 ATATGAGCAAGATAAGGAAGCTGGCAGAGG 0 121 1 AAGGAAGCTGGCAGAGGAGGAAGTCAAATC 0 134 1 TCGATGTACTGCTGAGCGAGTCAGCAAAAA 0 182 1 ACCCCTTAAAGCAGATGGGGCCGCCGAGAT 1 54 0 GTTTTCGACAGCAGGGGAAACGAGACGGTT 2 49 1 TGAAGTCGTTGCTGGGGAGGTTGTTGCGAA 2 84 1 ATCCTCAATTGAAGGGGGGCACATAACCTT 3 42 1 CATCACCGTCTAAGAGGAAGCAAGCCTGTA 3 82 0 GCACTTCGAAGAGGAAGATTGACCACC 4 7 1 AATCTGCCTCGAAGAGGAGGTTGAGTCAGG 4 41 1 TTATGGAGGAGCTGAGGGATTACGAGGTCG 5 68 0 CTCCGACCCCGCAGCGGAGGCTGGGAGGAT 5 106 0 ********** MAP Score: 20.8395 Motif 2 TGGAGGAGCTGAGGGATTACGAGGTCGTTGAGCCGGAACC 5 55 0 GCTGCGGGGTCGGAGGTGTAGACGGTGTAGAACTTCGGGT 5 121 1 AGTGTGAAGTCGTTGCTGGGGAGGTTGTTGCGAAGGCG 2 80 1 ACCTGAAAATCTGCCTCGAAGAGGAGGTTGAGTCAGGATA 4 34 1 GGTGATCCTGCGGCGTTCGGGACGCCGTGACCCGAGTTCA 1 13 1 TTTTCGACAGCAGGGGAAACGAGACGGTTGAGTGTGAAGT 2 50 1 AGATAAGGAAGCTGGCAGAGGAGGAAGTCAAATCCAAACC 0 130 1 GACCCCGCAGCGGAGGCTGGGAGGATGGAGGCTATTATGG 5 92 0 GTGCTCCCTCGTGTGAACGAGAGTATGTCCTCTATCTTTG 5 13 1 AACATCACCGTCTAAGAGGAAGCAAGCCTGTAAGG 3 79 0 GGTGGTAGCTTGATAATTGAGGACGTTCACTACAGAGT 2 8 1 CGTAATGTAACGGTCAAAACTACGCTGAGGTGTAGTTGAT 0 83 1 * * * **** ** * MAP Score: 16.0045 Motif 3 AATTTTTAATGTTCCTTCCGCGGAAGGCTAAAAACGA 0 22 0 AACTACACCTCAGCGTAGTTTTGACCGTTACATTACG 0 83 0 GCAAGATAAGGAAGCTGGCAGAGGAGGAAGTCAAATC 0 127 1 CCTGGTGATCCTGCGGCGTTCGGGACGCCGTGACCCG 1 10 1 GCAGATGGGGCCGCCGAGATTTGAACTCGGGTCACGG 1 37 0 CTGTCGAAAACGACTCTGTAGTGAACGTCCTCAATTA 2 23 0 TTGAGTGTGAAGTCGTTGCTGGGGAGGTTGTTGCGAA 2 77 1 AGAGCGGCGAATTAAATGCTAAAATTGG 3 1 1 AACATCACCGTCTAAGAGGAAGCAAGCCTGTA 3 82 0 GCACTTCGAAGAGGAAGATTGACCACC 4 0 1 ACCTGAAAATCTGCCTCGAAGAGGAGGTTGAGTCAGG 4 34 1 GTAGTGCTCCCTCGTGTGAACGAGAGTATGTC 5 5 1 GGGATTACGAGGTCGTTGAGCCGGAACCGGCAAAGAT 5 46 0 TCCGACCCCGCAGCGGAGGCTGGGAGGATGGAGGCTA 5 98 0 TCCGCTGCGGGGTCGGAGGTGTAGACGGTGTAGAACT 5 118 1 * *** * * *** * MAP Score: 13.1613 Motif 4 AGATAAGGAAGCTGGCAGAGGAGGAAGTCAAATCCAA 0 130 1 TCGACAGCAGGGGAAACGAGACGGTTGAGTGTGAAGT 2 53 1 AGTGTGAAGTCGTTGCTGGGGAGGTTGTTGCGAAGGC 2 80 1 GCACTTCGAAGAGGAAGATTGACCACC 4 0 1 TGAAAATCTGCCTCGAAGAGGAGGTTGAGTCAGGATA 4 37 1 GGGATTACGAGGTCGTTGAGCCGGAACCGGCAAAGAT 5 46 0 CCGCAGCGGAGGCTGGGAGGATGGAGGCTATTATGGA 5 91 0 TCCCAGCCTCCGCTGCGGGGTCGGAGGTGTAGACGGT 5 110 1 ** * *** *** * MAP Score: 9.09906 Motif 5 GAGCAAGATAAGGAAGCTGGCAGAGGAGGAAGTCAAATC 0 125 1 GGCGTCCCGAACGCCGCAGGATCACCAGG 1 0 0 TGCGGCGTTCGGGACGCCGTGACCCGAGTTCAAATCTCG 1 21 1 CACCCCTTAAAGCAGATGGGGCCGCCGAGATTTGAACT 1 47 0 CAGGGGAAACGAGACGGTTGAGTGTGAAGTCGTTGCTGG 2 60 1 AGTCGTTGCTGGGGAGGTTGTTGCGAAGGCG 2 87 1 ACCGTCTAAGAGGAAGCAAGCCTGTAAGGATATTTAAAG 3 69 0 CACTTCGAAGAGGAAGATTGACCACCTGAAAATCTGCCT 4 11 1 ATCTGCCTCGAAGAGGAGGTTGAGTCAGGATACACGGGA 4 42 1 TATTATGGAGGAGCTGAGGGATTACGAGGTCGTTGAGCC 5 61 0 GGAGGCTGGGAGGATGGAGGCTATTATGGAGGAGCTGAG 5 82 0 AGCCTCCGCTGCGGGGTCGGAGGTGTAGACGGTGTAGAA 5 114 1 **** * ** *** MAP Score: 8.74639 Motif 6 ATGTTCCTTCCGCGGAAGGCTAAAAACGATTT 0 19 0 GTCAAAACTACGCTGAGGTGTAGTTGATATGA 0 95 1 TAAGGAAGCTGGCAGAGGAGGAAGTCAAATCC 0 133 1 TGCTGACTCGCTCAGCAGTACATCGATGAGAG 0 176 0 GCGTCCCGAACGCCGCAGGATCACCAGG 1 6 0 GAGTTCAAATCTCGGCGGCCCCATCTGCTTTA 1 46 1 GTCTCGTTTCCCCTGCTGTCGAAAACGACTCT 2 43 0 AGTGTGAAGTCGTTGCTGGGGAGGTTGTTGCG 2 80 1 GCACTTCGAAGAGGAAGATTGACCA 4 3 1 TCAACCTCCTCTTCGAGGCAGATTTTCAGGTG 4 33 0 CCTCCGACCCCGCAGCGGAGGCTGGGAGGATG 5 105 0 CCGCTGCGGGGTCGGAGGTGTAGACGGTGTAG 5 119 1 *** **** *** MAP Score: 8.73565 Motif 7 GTAATGTAACGGTCAAAACTACGCTGAGGTGTAGTTGA 0 84 1 TTGATATGAGCAAGATAAGGAAGCTGGCAGAGGAGGAA 0 118 1 TCGTTACTCTCATCGATGTACTGCTGAGCGAGTCAGCA 0 170 1 CCTGGTGATCCTGCGGCGTTCGGGACGC 1 0 1 CGTGACCCGAGTTCAAATCTCGGCGGCCCCATCTGCTT 1 38 1 TCGGCGGCCCCATCTGCTTTAAGGGGTG 1 57 1 ACTCAACCGTCTCGTTTCCCCTGCTGTCGAAAACGACT 2 45 0 GGTTGAGTGTGAAGTCGTTGCTGGGGAGGTTGTTGCGA 2 75 1 TTGGAATAATCCTCAATTGAAGGGGGGCACATAACCTT 3 34 1 CCTCTTCGAGGCAGATTTTCAGGTGGTCAATCTTCCTC 4 20 0 GAAAATCTGCCTCGAAGAGGAGGTTGAGTCAGGATACA 4 38 1 AGGACATACTCTCGTTCACACGAGGGAGCACTAC 5 6 0 AGCCTCCATCCTCCCAGCCTCCGCTGCGGGGTCGGAGG 5 99 1 * ** * * **** * MAP Score: 4.82465 Motif 8 ATCGTTTTTAGCCTTCCGCGGAAGGAACATTAAA 0 21 1 AGATAAGGAAGCTGGCAGAGGAGGAAGTCAAATC 0 130 1 TCGATGTACTGCTGAGCGAGTCAGCAAAAAATGA 0 182 1 GTCACGGCGTCCCGAACGCCGCAGGATCACCAGG 1 10 0 CACCCCTTAAAGCAGATGGGGCCGCCGA 1 57 0 AACATCACCGTCTAAGAGGAAGCAAGCCTGTA 3 82 0 GCACTTCGAAGAGGAAGATTGACCACC 4 3 1 GACTCAACCTCCTCTTCGAGGCAGATTTTCAGGT 4 34 0 GCCGGTTCCGGCTCAACGACCTCGTAATCCCTCA 5 52 1 TAGCCTCCATCCTCCCAGCCTCCGCTGCGGGGTC 5 98 1 ACACCGTCTACACCTCCGACCCCGCAGCGGAGGC 5 115 0 **** ***** * MAP Score: 4.58451 Motif 9 GGTTGAGTGTGAAGTCGTTGCTGGGGAGGTTGTTG 2 75 1 CGTTGCTGGGGAGGTTGTTGCGAAGGCG 2 90 1 CCTCCTCTTCGAGGCAGATTTTCAGGTGGTCAATC 4 26 0 AATCTGCCTCGAAGAGGAGGTTGAGTCAGGATACA 4 41 1 GCTGAGGGATTACGAGGTCGTTGAGCCGGAACCGG 5 53 0 TGGAGGCTATTATGGAGGAGCTGAGGGATTACGAG 5 72 0 CATCCTCCCAGCCTCCGCTGCGGGGTCGGAGGTGT 5 105 1 ** * * ****** MAP Score: 1.65101 Motif 10 CAAAACTACGCTGAGGTGTAGTTGATATGAGCAA 0 97 1 GATATGAGCAAGATAAGGAAGCTGGCAGAGGAGG 0 120 1 TAAGGAAGCTGGCAGAGGAGGAAGTCAAATCCAA 0 133 1 GTCACGGCGTCCCGAACGCCGCAGGATCACCAGG 1 10 0 GATCCTGCGGCGTTCGGGACGCCGTGACCCGAGT 1 16 1 CCCTTAAAGCAGATGGGGCCGCCGAGATTTGAAC 1 48 0 GTAGCTTGATAATTGAGGACGTTCACTACAGAGT 2 14 1 CGGTTGAGTGTGAAGTCGTTGCTGGGGAGGTTGT 2 74 1 AAGTCGTTGCTGGGGAGGTTGTTGCGAAGGCG 2 86 1 CTTGCTTCCTCTTAGACGGTGATGTT 3 88 1 AAATCTGCCTCGAAGAGGAGGTTGAGTCAGGATA 4 40 1 ACTCTCGTTCACACGAGGGAGCACTAC 5 3 0 TGTCCTCTATCTTTGCCGGTTCCGGCTCAACGAC 5 38 1 AGCTGAGGGATTACGAGGTCGTTGAGCCGGAACC 5 55 0 ATGGAGGCTATTATGGAGGAGCTGAGGGATTACG 5 74 0 GCAGCGGAGGCTGGGAGGATGGAGGCTATTATGG 5 92 0 CCTCCGACCCCGCAGCGGAGGCTGGGAGGATGGA 5 103 0 CTCCCAGCCTCCGCTGCGGGGTCGGAGGTGTAGA 5 109 1 GGGTCGGAGGTGTAGACGGTGTAGAACTTCGGGT 5 127 1 ** **** **** MAP Score: 1.41458